fix: airgapped (#6067)

Co-authored-by: greptile-apps[bot] <165735046+greptile-apps[bot]@users.noreply.github.com>

.github/CODEOWNERS

@@ -0,0 +1,3 @@
+* @onyx-dot-app/onyx-core-team
+# Helm charts Owners
+/helm/ @justin-tahara

.github/actions/custom-build-and-push/action.yml

@@ -0,0 +1,135 @@
+name: 'Build and Push Docker Image with Retry'
+description: 'Attempts to build and push a Docker image, with a retry on failure'
+inputs:
+  context:
+    description: 'Build context'
+    required: true
+  file:
+    description: 'Dockerfile location'
+    required: true
+  platforms:
+    description: 'Target platforms'
+    required: true
+  pull:
+    description: 'Always attempt to pull a newer version of the image'
+    required: false
+    default: 'true'
+  push:
+    description: 'Push the image to registry'
+    required: false
+    default: 'true'
+  load:
+    description: 'Load the image into Docker daemon'
+    required: false
+    default: 'true'
+  tags:
+    description: 'Image tags'
+    required: true
+  no-cache:
+    description: 'Read from cache'
+    required: false
+    default: 'false'
+  cache-from:
+    description: 'Cache sources'
+    required: false
+  cache-to:
+    description: 'Cache destinations'
+    required: false
+  outputs:
+    description: 'Output destinations'
+    required: false
+  provenance:
+    description: 'Generate provenance attestation'
+    required: false
+    default: 'false'
+  build-args:
+    description: 'Build arguments'
+    required: false
+  retry-wait-time:
+    description: 'Time to wait before attempt 2 in seconds'
+    required: false
+    default: '60'
+  retry-wait-time-2:
+    description: 'Time to wait before attempt 3 in seconds'
+    required: false
+    default: '120'
+
+runs:
+  using: "composite"
+  steps:
+    - name: Build and push Docker image (Attempt 1 of 3)
+      id: buildx1
+      uses: docker/build-push-action@v6
+      continue-on-error: true
+      with:
+        context: ${{ inputs.context }}
+        file: ${{ inputs.file }}
+        platforms: ${{ inputs.platforms }}
+        pull: ${{ inputs.pull }}
+        push: ${{ inputs.push }}
+        load: ${{ inputs.load }}
+        tags: ${{ inputs.tags }}
+        no-cache: ${{ inputs.no-cache }}
+        cache-from: ${{ inputs.cache-from }}
+        cache-to: ${{ inputs.cache-to }}
+        outputs: ${{ inputs.outputs }}
+        provenance: ${{ inputs.provenance }}
+        build-args: ${{ inputs.build-args }}
+
+    - name: Wait before attempt 2
+      if: steps.buildx1.outcome != 'success'
+      run: |
+        echo "First attempt failed. Waiting ${{ inputs.retry-wait-time }} seconds before retry..."
+        sleep ${{ inputs.retry-wait-time }}
+      shell: bash
+
+    - name: Build and push Docker image (Attempt 2 of 3)
+      id: buildx2
+      if: steps.buildx1.outcome != 'success'
+      uses: docker/build-push-action@v6
+      with:
+        context: ${{ inputs.context }}
+        file: ${{ inputs.file }}
+        platforms: ${{ inputs.platforms }}
+        pull: ${{ inputs.pull }}
+        push: ${{ inputs.push }}
+        load: ${{ inputs.load }}
+        tags: ${{ inputs.tags }}
+        no-cache: ${{ inputs.no-cache }}
+        cache-from: ${{ inputs.cache-from }}
+        cache-to: ${{ inputs.cache-to }}
+        outputs: ${{ inputs.outputs }}
+        provenance: ${{ inputs.provenance }}
+        build-args: ${{ inputs.build-args }}
+
+    - name: Wait before attempt 3
+      if: steps.buildx1.outcome != 'success' && steps.buildx2.outcome != 'success'
+      run: |
+        echo "Second attempt failed. Waiting ${{ inputs.retry-wait-time-2 }} seconds before retry..."
+        sleep ${{ inputs.retry-wait-time-2 }}
+      shell: bash
+
+    - name: Build and push Docker image (Attempt 3 of 3)
+      id: buildx3
+      if: steps.buildx1.outcome != 'success' && steps.buildx2.outcome != 'success'
+      uses: docker/build-push-action@v6
+      with:
+        context: ${{ inputs.context }}
+        file: ${{ inputs.file }}
+        platforms: ${{ inputs.platforms }}
+        pull: ${{ inputs.pull }}
+        push: ${{ inputs.push }}
+        load: ${{ inputs.load }}
+        tags: ${{ inputs.tags }}
+        no-cache: ${{ inputs.no-cache }}
+        cache-from: ${{ inputs.cache-from }}
+        cache-to: ${{ inputs.cache-to }}
+        outputs: ${{ inputs.outputs }}
+        provenance: ${{ inputs.provenance }}
+        build-args: ${{ inputs.build-args }}
+
+    - name: Report failure
+      if: steps.buildx1.outcome != 'success' && steps.buildx2.outcome != 'success' && steps.buildx3.outcome != 'success'
+      run: |
+        echo "All attempts failed. Possible transient infrastucture issues? Try again later or inspect logs for details."
+      shell: bash

.github/actions/prepare-build/action.yml

@@ -0,0 +1,50 @@
+name: "Prepare Build (OpenAPI generation)"
+description: "Sets up Python with uv, installs deps, generates OpenAPI schema and Python client, uploads artifact"
+runs:
+  using: "composite"
+  steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+
+    - name: Setup uv
+      uses: astral-sh/setup-uv@v3
+
+    - name: Setup Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.11"
+
+    - name: Install Python dependencies with uv
+      shell: bash
+      run: |
+        uv pip install --system \
+          -r backend/requirements/default.txt \
+          -r backend/requirements/dev.txt
+
+    - name: Generate OpenAPI schema
+      shell: bash
+      working-directory: backend
+      env:
+        PYTHONPATH: "."
+      run: |
+        python scripts/onyx_openapi_schema.py --filename generated/openapi.json
+
+    - name: Generate OpenAPI Python client
+      shell: bash
+      run: |
+        docker run --rm \
+          -v "${{ github.workspace }}/backend/generated:/local" \
+          openapitools/openapi-generator-cli generate \
+          -i /local/openapi.json \
+          -g python \
+          -o /local/onyx_openapi_client \
+          --package-name onyx_openapi_client \
+          --skip-validate-spec \
+          --openapi-normalizer "SIMPLIFY_ONEOF_ANYOF=true,SET_OAS3_NULLABLE=true"
+
+    - name: Upload OpenAPI artifacts
+      uses: actions/upload-artifact@v4
+      with:
+        name: openapi-artifacts
+        path: backend/generated/
+

.github/pull_request_template.md

@@ -0,0 +1,11 @@
+## Description
+
+[Provide a brief description of the changes in this PR]
+
+## How Has This Been Tested?
+
+[Describe the tests you ran to verify your changes]
+
+## Additional Options
+
+- [ ] [Optional] Override Linear Check

.github/workflows/check-lazy-imports.yml

@@ -0,0 +1,24 @@
+name: Check Lazy Imports
+
+on:
+  merge_group:
+  pull_request:
+    branches:
+      - main
+      - 'release/**'
+
+jobs:
+  check-lazy-imports:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: '3.11'
+
+    - name: Check lazy imports
+      run: python3 backend/scripts/check_lazy_imports.py

.github/workflows/docker-build-and-push-on-tag.yml

@@ -1,41 +0,0 @@
-name: Build and Push Docker Images on Tagging
-
-on:
-  push:
-    tags:
-      - '*'
-
-jobs:
-  build-and-push:
-    runs-on: ubuntu-latest
-
-    steps:
-    - name: Checkout code
-      uses: actions/checkout@v2
-
-    - name: Set up Docker Buildx
-      uses: docker/setup-buildx-action@v1
-
-    - name: Login to Docker Hub
-      uses: docker/login-action@v1
-      with:
-        username: ${{ secrets.DOCKER_USERNAME }}
-        password: ${{ secrets.DOCKER_TOKEN }}
-
-    - name: Web Server Docker Build and Push
-      uses: docker/build-push-action@v2
-      with:
-        context: ./web
-        file: ./web/Dockerfile
-        platforms: linux/amd64,linux/arm64
-        push: true
-        tags: danswer/danswer-web-server:${{ github.ref_name }}
-
-    - name: Api Server Docker Build and Push
-      uses: docker/build-push-action@v2
-      with:
-        context: ./backend
-        file: ./backend/Dockerfile
-        platforms: linux/amd64,linux/arm64
-        push: true
-        tags: danswer/danswer-backend:${{ github.ref_name }}

.github/workflows/docker-build-push-backend-container-on-tag.yml

@@ -0,0 +1,198 @@
+name: Build and Push Backend Image on Tag
+
+on:
+  push:
+    tags:
+      - "*"
+
+env:
+  REGISTRY_IMAGE: ${{ contains(github.ref_name, 'cloud') && 'onyxdotapp/onyx-backend-cloud' || 'onyxdotapp/onyx-backend' }}
+  DEPLOYMENT: ${{ contains(github.ref_name, 'cloud') && 'cloud' || 'standalone' }}
+
+  # tag nightly builds with "edge"
+  EDGE_TAG: ${{ startsWith(github.ref_name, 'nightly-latest') }}
+
+jobs:
+  build-and-push:
+    # TODO: investigate a matrix build like the web container
+    # See https://runs-on.com/runners/linux/
+    runs-on:
+      - runs-on
+      - runner=${{ matrix.platform == 'linux/amd64' && '8cpu-linux-x64' || '8cpu-linux-arm64' }}
+      - run-id=${{ github.run_id }}
+      - tag=platform-${{ matrix.platform }}
+    strategy:
+      fail-fast: false
+      matrix:
+        platform:
+          - linux/amd64
+          - linux/arm64
+          
+    steps:
+      - name: Prepare
+        run: |
+          platform=${{ matrix.platform }}
+          echo "PLATFORM_PAIR=${platform//\//-}" >> $GITHUB_ENV
+
+      - name: Check if stable release version
+        id: check_version
+        run: |
+          if [[ "${{ github.ref_name }}" =~ ^v[0-9]+\.[0-9]+\.[0-9]+$ ]] && [[ "${{ github.ref_name }}" != *"cloud"* ]]; then
+            echo "is_stable=true" >> $GITHUB_OUTPUT
+          else
+            echo "is_stable=false" >> $GITHUB_OUTPUT
+          fi
+          if [[ "${{ github.ref_name }}" =~ ^v[0-9]+\.[0-9]+\.[0-9]+-beta\.[0-9]+$ ]] && [[ "${{ github.ref_name }}" != *"cloud"* ]]; then
+            echo "is_beta=true" >> $GITHUB_OUTPUT
+          else
+            echo "is_beta=false" >> $GITHUB_OUTPUT
+          fi
+
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Docker meta
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.REGISTRY_IMAGE }}
+          flavor: |
+            latest=false
+          tags: |
+            type=raw,value=${{ github.ref_name }}
+            type=raw,value=${{ steps.check_version.outputs.is_stable == 'true' && 'latest' || '' }}
+            type=raw,value=${{ env.EDGE_TAG == 'true' && 'edge' || '' }}
+            type=raw,value=${{ steps.check_version.outputs.is_beta == 'true' && 'beta' || '' }}
+            
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Install build-essential
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y build-essential
+
+      - name: Backend Image Docker Build and Push
+        id: build
+        uses: docker/build-push-action@v6
+        with:
+          context: ./backend
+          file: ./backend/Dockerfile
+          platforms: ${{ matrix.platform }}
+          push: true
+          build-args: |
+            ONYX_VERSION=${{ github.ref_name }}
+          labels: ${{ steps.meta.outputs.labels }}
+          outputs: type=image,name=${{ env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
+          cache-from: type=s3,prefix=cache/${{ github.repository }}/${{ env.DEPLOYMENT }}/backend-${{ env.PLATFORM_PAIR }}/,region=${{ env.RUNS_ON_AWS_REGION }},bucket=${{ env.RUNS_ON_S3_BUCKET_CACHE }}
+          cache-to: type=s3,prefix=cache/${{ github.repository }}/${{ env.DEPLOYMENT }}/backend-${{ env.PLATFORM_PAIR }}/,region=${{ env.RUNS_ON_AWS_REGION }},bucket=${{ env.RUNS_ON_S3_BUCKET_CACHE }},mode=max
+
+      - name: Export digest      
+        run: |
+          mkdir -p /tmp/digests
+          digest="${{ steps.build.outputs.digest }}"
+          touch "/tmp/digests/${digest#sha256:}"
+
+      - name: Upload digest
+        uses: actions/upload-artifact@v4
+        with:
+          name: backend-digests-${{ env.PLATFORM_PAIR }}-${{ github.run_id }}
+          path: /tmp/digests/*
+          if-no-files-found: error
+          retention-days: 1
+          
+  merge:
+    runs-on: ubuntu-latest
+    needs:
+      - build-and-push
+    steps:
+      # Needed for trivyignore
+      - name: Checkout
+        uses: actions/checkout@v4
+      
+      - name: Check if stable release version
+        id: check_version
+        run: |
+          if [[ "${{ github.ref_name }}" =~ ^v[0-9]+\.[0-9]+\.[0-9]+$ ]] && [[ "${{ github.ref_name }}" != *"cloud"* ]]; then
+            echo "is_stable=true" >> $GITHUB_OUTPUT
+          else
+            echo "is_stable=false" >> $GITHUB_OUTPUT
+          fi
+          if [[ "${{ github.ref_name }}" =~ ^v[0-9]+\.[0-9]+\.[0-9]+-beta\.[0-9]+$ ]] && [[ "${{ github.ref_name }}" != *"cloud"* ]]; then
+            echo "is_beta=true" >> $GITHUB_OUTPUT
+          else
+            echo "is_beta=false" >> $GITHUB_OUTPUT
+          fi
+        
+      - name: Download digests
+        uses: actions/download-artifact@v4
+        with:
+          path: /tmp/digests
+          pattern: backend-digests-*-${{ github.run_id }}
+          merge-multiple: true
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Docker meta
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.REGISTRY_IMAGE }}
+          flavor: |
+            latest=false
+          tags: |
+            type=raw,value=${{ github.ref_name }}
+            type=raw,value=${{ steps.check_version.outputs.is_stable == 'true' && 'latest' || '' }}
+            type=raw,value=${{ env.EDGE_TAG == 'true' && 'edge' || '' }}
+            type=raw,value=${{ steps.check_version.outputs.is_beta == 'true' && 'beta' || '' }}
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Create manifest list and push
+        working-directory: /tmp/digests
+        run: |
+          docker buildx imagetools create $(jq -cr '.tags | map("-t " + .) | join(" ")' <<< "$DOCKER_METADATA_OUTPUT_JSON") \
+            $(printf '${{ env.REGISTRY_IMAGE }}@sha256:%s ' *)
+
+      - name: Inspect image
+        run: |
+          docker buildx imagetools inspect ${{ env.REGISTRY_IMAGE }}:${{ steps.meta.outputs.version }}
+          
+      # trivy has their own rate limiting issues causing this action to flake
+      # we worked around it by hardcoding to different db repos in env
+      # can re-enable when they figure it out
+      # https://github.com/aquasecurity/trivy/discussions/7538
+      # https://github.com/aquasecurity/trivy-action/issues/389
+      # Security: Using pinned digest (0.65.0@sha256:a22415a38938a56c379387a8163fcb0ce38b10ace73e593475d3658d578b2436)
+      # Security: No Docker socket mount needed for remote registry scanning
+      - name: Run Trivy vulnerability scanner
+        uses: nick-fields/retry@v3
+        with:
+          timeout_minutes: 30
+          max_attempts: 3
+          retry_wait_seconds: 10
+          command: |
+            docker run --rm -v $HOME/.cache/trivy:/root/.cache/trivy \
+              -v ${{ github.workspace }}/backend/.trivyignore:/tmp/.trivyignore:ro \
+              -e TRIVY_DB_REPOSITORY="public.ecr.aws/aquasecurity/trivy-db:2" \
+              -e TRIVY_JAVA_DB_REPOSITORY="public.ecr.aws/aquasecurity/trivy-java-db:1" \
+              -e TRIVY_USERNAME="${{ secrets.DOCKER_USERNAME }}" \
+              -e TRIVY_PASSWORD="${{ secrets.DOCKER_TOKEN }}" \
+              aquasec/trivy@sha256:a22415a38938a56c379387a8163fcb0ce38b10ace73e593475d3658d578b2436 \
+              image \
+              --skip-version-check \
+              --timeout 20m \
+              --severity CRITICAL,HIGH \
+              --ignorefile /tmp/.trivyignore \
+              docker.io/${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}

.github/workflows/docker-build-push-cloud-web-container-on-tag.yml

@@ -0,0 +1,158 @@
+name: Build and Push Cloud Web Image on Tag
+# Identical to the web container build, but with correct image tag and build args
+
+on:
+  push:
+    tags:
+      - "*cloud*"
+
+env:
+  REGISTRY_IMAGE: onyxdotapp/onyx-web-server-cloud
+  DEPLOYMENT: cloud
+  
+jobs:
+  build:
+    runs-on:
+      - runs-on
+      - runner=${{ matrix.platform == 'linux/amd64' && '8cpu-linux-x64' || '8cpu-linux-arm64' }}
+      - run-id=${{ github.run_id }}
+      - tag=platform-${{ matrix.platform }}
+    strategy:
+      fail-fast: false
+      matrix:
+        platform:
+          - linux/amd64
+          - linux/arm64
+
+    steps:
+      - name: Prepare
+        run: |
+          platform=${{ matrix.platform }}
+          echo "PLATFORM_PAIR=${platform//\//-}" >> $GITHUB_ENV
+
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Docker meta
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.REGISTRY_IMAGE }}
+          flavor: |
+            latest=false
+          tags: |
+            type=raw,value=${{ github.ref_name }}
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Build and push by digest
+        id: build
+        uses: docker/build-push-action@v6
+        with:
+          context: ./web
+          file: ./web/Dockerfile
+          platforms: ${{ matrix.platform }}
+          push: true
+          build-args: |
+            ONYX_VERSION=${{ github.ref_name }}
+            NEXT_PUBLIC_CLOUD_ENABLED=true
+            NEXT_PUBLIC_POSTHOG_KEY=${{ secrets.POSTHOG_KEY }}
+            NEXT_PUBLIC_POSTHOG_HOST=${{ secrets.POSTHOG_HOST }}
+            NEXT_PUBLIC_SENTRY_DSN=${{ secrets.SENTRY_DSN }}
+            NEXT_PUBLIC_STRIPE_PUBLISHABLE_KEY=${{ secrets.STRIPE_PUBLISHABLE_KEY }}
+            NEXT_PUBLIC_GTM_ENABLED=true
+            NEXT_PUBLIC_FORGOT_PASSWORD_ENABLED=true
+            NEXT_PUBLIC_INCLUDE_ERROR_POPUP_SUPPORT_LINK=true
+            NODE_OPTIONS=--max-old-space-size=8192
+          labels: ${{ steps.meta.outputs.labels }}
+          outputs: type=image,name=${{ env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
+          cache-from: type=s3,prefix=cache/${{ github.repository }}/${{ env.DEPLOYMENT }}/cloudweb-${{ env.PLATFORM_PAIR }}/,region=${{ env.RUNS_ON_AWS_REGION }},bucket=${{ env.RUNS_ON_S3_BUCKET_CACHE }}
+          cache-to: type=s3,prefix=cache/${{ github.repository }}/${{ env.DEPLOYMENT }}/cloudweb-${{ env.PLATFORM_PAIR }}/,region=${{ env.RUNS_ON_AWS_REGION }},bucket=${{ env.RUNS_ON_S3_BUCKET_CACHE }},mode=max
+          # no-cache needed due to weird interactions with the builds for different platforms
+          # NOTE(rkuo): this may not be true any more with the proper cache prefixing by architecture - currently testing with it off
+
+      - name: Export digest
+        run: |
+          mkdir -p /tmp/digests
+          digest="${{ steps.build.outputs.digest }}"
+          touch "/tmp/digests/${digest#sha256:}"
+
+      - name: Upload digest
+        uses: actions/upload-artifact@v4
+        with:
+          name: cloudweb-digests-${{ env.PLATFORM_PAIR }}-${{ github.run_id }}
+          path: /tmp/digests/*
+          if-no-files-found: error
+          retention-days: 1
+
+  merge:
+    runs-on: ubuntu-latest
+    needs:
+      - build
+    steps:
+      - name: Download digests
+        uses: actions/download-artifact@v4
+        with:
+          path: /tmp/digests
+          pattern: cloudweb-digests-*-${{ github.run_id }}
+          merge-multiple: true
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Docker meta
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.REGISTRY_IMAGE }}
+          flavor: |
+            latest=false
+          tags: |
+            type=raw,value=${{ github.ref_name }}
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Create manifest list and push
+        working-directory: /tmp/digests
+        run: |
+          docker buildx imagetools create $(jq -cr '.tags | map("-t " + .) | join(" ")' <<< "$DOCKER_METADATA_OUTPUT_JSON") \
+            $(printf '${{ env.REGISTRY_IMAGE }}@sha256:%s ' *)
+
+      - name: Inspect image
+        run: |
+          docker buildx imagetools inspect ${{ env.REGISTRY_IMAGE }}:${{ steps.meta.outputs.version }}
+
+      # trivy has their own rate limiting issues causing this action to flake
+      # we worked around it by hardcoding to different db repos in env
+      # can re-enable when they figure it out
+      # https://github.com/aquasecurity/trivy/discussions/7538
+      # https://github.com/aquasecurity/trivy-action/issues/389
+      - name: Run Trivy vulnerability scanner
+        uses: nick-fields/retry@v3
+        with:
+          timeout_minutes: 30
+          max_attempts: 3
+          retry_wait_seconds: 10
+          command: |
+            docker run --rm -v $HOME/.cache/trivy:/root/.cache/trivy \
+              -e TRIVY_DB_REPOSITORY="public.ecr.aws/aquasecurity/trivy-db:2" \
+              -e TRIVY_JAVA_DB_REPOSITORY="public.ecr.aws/aquasecurity/trivy-java-db:1" \
+              -e TRIVY_USERNAME="${{ secrets.DOCKER_USERNAME }}" \
+              -e TRIVY_PASSWORD="${{ secrets.DOCKER_TOKEN }}" \
+              aquasec/trivy@sha256:a22415a38938a56c379387a8163fcb0ce38b10ace73e593475d3658d578b2436 \
+              image \
+              --skip-version-check \
+              --timeout 20m \
+              --severity CRITICAL,HIGH \
+              docker.io/${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}

.github/workflows/docker-build-push-model-server-container-on-tag.yml

@@ -0,0 +1,207 @@
+name: Build and Push Model Server Image on Tag
+
+on:
+  push:
+    tags:
+      - "*"
+
+env:
+  REGISTRY_IMAGE: ${{ contains(github.ref_name, 'cloud') && 'onyxdotapp/onyx-model-server-cloud' || 'onyxdotapp/onyx-model-server' }}
+  DOCKER_BUILDKIT: 1
+  BUILDKIT_PROGRESS: plain
+  DEPLOYMENT: ${{ contains(github.ref_name, 'cloud') && 'cloud' || 'standalone' }}
+
+  # tag nightly builds with "edge"
+  EDGE_TAG: ${{ startsWith(github.ref_name, 'nightly-latest') }}
+  
+jobs:
+
+#   Bypassing this for now as the idea of not building is glitching
+#   releases and builds that depends on everything being tagged in docker
+#   1) Preliminary job to check if the changed files are relevant
+#   check_model_server_changes:
+#     runs-on: ubuntu-latest
+#     outputs:
+#       changed: ${{ steps.check.outputs.changed }}
+#     steps:
+#       - name: Checkout code
+#         uses: actions/checkout@v4
+# 
+#       - name: Check if relevant files changed
+#         id: check
+#         run: |
+#           # Default to "false"
+#           echo "changed=false" >> $GITHUB_OUTPUT
+# 
+#           # Compare the previous commit (github.event.before) to the current one (github.sha)
+#           # If any file in backend/model_server/** or backend/Dockerfile.model_server is changed,
+#           # set changed=true
+#           if git diff --name-only ${{ github.event.before }} ${{ github.sha }} \
+#              | grep -E '^backend/model_server/|^backend/Dockerfile.model_server'; then
+#             echo "changed=true" >> $GITHUB_OUTPUT
+#           fi
+
+  check_model_server_changes:
+    runs-on: ubuntu-latest
+    outputs:
+      changed: "true"
+    steps:
+      - name: Bypass check and set output
+        run: echo "changed=true" >> $GITHUB_OUTPUT
+        
+  build-amd64:
+    needs: [check_model_server_changes]
+    if: needs.check_model_server_changes.outputs.changed == 'true'
+    runs-on:
+      [runs-on, runner=8cpu-linux-x64, "run-id=${{ github.run_id }}-amd64"]
+    env:
+      PLATFORM_PAIR: linux-amd64
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: System Info
+        run: |
+          df -h
+          free -h
+          docker system prune -af --volumes
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+        with:
+          driver-opts: |
+            image=moby/buildkit:latest
+            network=host
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Build and Push AMD64
+        uses: docker/build-push-action@v6
+        with:
+          context: ./backend
+          file: ./backend/Dockerfile.model_server
+          platforms: linux/amd64
+          push: true
+          tags: ${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}-amd64
+          build-args: |
+            ONYX_VERSION=${{ github.ref_name }}
+          outputs: type=registry
+          provenance: false
+          cache-from: type=s3,prefix=cache/${{ github.repository }}/${{ env.DEPLOYMENT }}/model-server-${{ env.PLATFORM_PAIR }}/,region=${{ env.RUNS_ON_AWS_REGION }},bucket=${{ env.RUNS_ON_S3_BUCKET_CACHE }}
+          cache-to: type=s3,prefix=cache/${{ github.repository }}/${{ env.DEPLOYMENT }}/model-server-${{ env.PLATFORM_PAIR }}/,region=${{ env.RUNS_ON_AWS_REGION }},bucket=${{ env.RUNS_ON_S3_BUCKET_CACHE }},mode=max
+#           no-cache: true
+
+  build-arm64:
+    needs: [check_model_server_changes]
+    if: needs.check_model_server_changes.outputs.changed == 'true'
+    runs-on:
+      [runs-on, runner=8cpu-linux-arm64, "run-id=${{ github.run_id }}-arm64"]
+    env:
+      PLATFORM_PAIR: linux-arm64
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: System Info
+        run: |
+          df -h
+          free -h
+          docker system prune -af --volumes
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+        with:
+          driver-opts: |
+            image=moby/buildkit:latest
+            network=host
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Build and Push ARM64
+        uses: docker/build-push-action@v6
+        with:
+          context: ./backend
+          file: ./backend/Dockerfile.model_server
+          platforms: linux/arm64
+          push: true
+          tags: ${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}-arm64
+          build-args: |
+            ONYX_VERSION=${{ github.ref_name }}
+          outputs: type=registry
+          provenance: false
+          cache-from: type=s3,prefix=cache/${{ github.repository }}/${{ env.DEPLOYMENT }}/model-server-${{ env.PLATFORM_PAIR }}/,region=${{ env.RUNS_ON_AWS_REGION }},bucket=${{ env.RUNS_ON_S3_BUCKET_CACHE }}
+          cache-to: type=s3,prefix=cache/${{ github.repository }}/${{ env.DEPLOYMENT }}/model-server-${{ env.PLATFORM_PAIR }}/,region=${{ env.RUNS_ON_AWS_REGION }},bucket=${{ env.RUNS_ON_S3_BUCKET_CACHE }},mode=max
+
+  merge-and-scan:
+    needs: [build-amd64, build-arm64, check_model_server_changes]
+    if: needs.check_model_server_changes.outputs.changed == 'true'
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check if stable release version
+        id: check_version
+        run: |
+          if [[ "${{ github.ref_name }}" =~ ^v[0-9]+\.[0-9]+\.[0-9]+$ ]] && [[ "${{ github.ref_name }}" != *"cloud"* ]]; then
+            echo "is_stable=true" >> $GITHUB_OUTPUT
+          else
+            echo "is_stable=false" >> $GITHUB_OUTPUT
+          fi
+          if [[ "${{ github.ref_name }}" =~ ^v[0-9]+\.[0-9]+\.[0-9]+-beta\.[0-9]+$ ]] && [[ "${{ github.ref_name }}" != *"cloud"* ]]; then
+            echo "is_beta=true" >> $GITHUB_OUTPUT
+          else
+            echo "is_beta=false" >> $GITHUB_OUTPUT
+          fi
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Create and Push Multi-arch Manifest
+        run: |
+          docker buildx create --use
+          docker buildx imagetools create -t ${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }} \
+            ${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}-amd64 \
+            ${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}-arm64
+          if [[ "${{ steps.check_version.outputs.is_stable }}" == "true" ]]; then
+            docker buildx imagetools create -t ${{ env.REGISTRY_IMAGE }}:latest \
+              ${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}-amd64 \
+              ${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}-arm64
+          fi
+          if [[ "${{ env.EDGE_TAG }}" == "true" ]]; then
+            docker buildx imagetools create -t ${{ env.REGISTRY_IMAGE }}:edge \
+              ${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}-amd64 \
+              ${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}-arm64
+          fi
+          if [[ "${{ steps.check_version.outputs.is_beta }}" == "true" ]]; then
+            docker buildx imagetools create -t ${{ env.REGISTRY_IMAGE }}:beta \
+              ${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}-amd64 \
+              ${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}-arm64
+          fi
+
+      - name: Run Trivy vulnerability scanner
+        uses: nick-fields/retry@v3
+        with:
+          timeout_minutes: 30
+          max_attempts: 3
+          retry_wait_seconds: 10
+          command: |
+            docker run --rm -v $HOME/.cache/trivy:/root/.cache/trivy \
+              -e TRIVY_DB_REPOSITORY="public.ecr.aws/aquasecurity/trivy-db:2" \
+              -e TRIVY_JAVA_DB_REPOSITORY="public.ecr.aws/aquasecurity/trivy-java-db:1" \
+              -e TRIVY_USERNAME="${{ secrets.DOCKER_USERNAME }}" \
+              -e TRIVY_PASSWORD="${{ secrets.DOCKER_TOKEN }}" \
+              aquasec/trivy@sha256:a22415a38938a56c379387a8163fcb0ce38b10ace73e593475d3658d578b2436 \
+              image \
+              --skip-version-check \
+              --timeout 20m \
+              --severity CRITICAL,HIGH \
+              docker.io/${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}

.github/workflows/docker-build-push-web-container-on-tag.yml

@@ -0,0 +1,204 @@
+name: Build and Push Web Image on Tag
+
+on:
+  push:
+    tags:
+      - "*"
+
+env:
+  REGISTRY_IMAGE: onyxdotapp/onyx-web-server
+
+  # tag nightly builds with "edge"
+  EDGE_TAG: ${{ startsWith(github.ref_name, 'nightly-latest') }}
+
+  DEPLOYMENT: standalone
+
+jobs:
+  precheck:
+    runs-on: [runs-on, runner=2cpu-linux-x64, "run-id=${{ github.run_id }}"]
+    outputs:
+      should-run: ${{ steps.set-output.outputs.should-run }}
+    steps:
+      - name: Check if tag contains "cloud"
+        id: set-output
+        run: |
+          if [[ "${{ github.ref_name }}" == *cloud* ]]; then
+            echo "should-run=false" >> "$GITHUB_OUTPUT"
+          else
+            echo "should-run=true" >> "$GITHUB_OUTPUT"
+          fi
+  build:
+    needs: precheck
+    if: needs.precheck.outputs.should-run == 'true'
+    runs-on:
+      - runs-on
+      - runner=${{ matrix.platform == 'linux/amd64' && '8cpu-linux-x64' || '8cpu-linux-arm64' }}
+      - run-id=${{ github.run_id }}
+      - tag=platform-${{ matrix.platform }}
+    strategy:
+      fail-fast: false
+      matrix:
+        platform:
+          - linux/amd64
+          - linux/arm64
+
+    steps:
+      - name: Prepare
+        run: |
+          platform=${{ matrix.platform }}
+          echo "PLATFORM_PAIR=${platform//\//-}" >> $GITHUB_ENV
+
+      - name: Check if stable release version
+        id: check_version
+        run: |
+          if [[ "${{ github.ref_name }}" =~ ^v[0-9]+\.[0-9]+\.[0-9]+$ ]]; then
+            echo "is_stable=true" >> $GITHUB_OUTPUT
+          else
+            echo "is_stable=false" >> $GITHUB_OUTPUT
+          fi
+          if [[ "${{ github.ref_name }}" =~ ^v[0-9]+\.[0-9]+\.[0-9]+-beta\.[0-9]+$ ]]; then
+            echo "is_beta=true" >> $GITHUB_OUTPUT
+          else
+            echo "is_beta=false" >> $GITHUB_OUTPUT
+          fi
+
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Docker meta
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.REGISTRY_IMAGE }}
+          flavor: |
+            latest=false
+          tags: |
+            type=raw,value=${{ github.ref_name }}
+            type=raw,value=${{ steps.check_version.outputs.is_stable == 'true' && 'latest' || '' }}
+            type=raw,value=${{ env.EDGE_TAG == 'true' && 'edge' || '' }}
+            type=raw,value=${{ steps.check_version.outputs.is_beta == 'true' && 'beta' || '' }}
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Build and push by digest
+        id: build
+        uses: docker/build-push-action@v6
+        with:
+          context: ./web
+          file: ./web/Dockerfile
+          platforms: ${{ matrix.platform }}
+          push: true
+          build-args: |
+            ONYX_VERSION=${{ github.ref_name }}
+            NODE_OPTIONS=--max-old-space-size=8192
+
+          labels: ${{ steps.meta.outputs.labels }}
+          outputs: type=image,name=${{ env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
+          cache-from: type=s3,prefix=cache/${{ github.repository }}/${{ env.DEPLOYMENT }}/web-${{ env.PLATFORM_PAIR }}/,region=${{ env.RUNS_ON_AWS_REGION }},bucket=${{ env.RUNS_ON_S3_BUCKET_CACHE }}
+          cache-to: type=s3,prefix=cache/${{ github.repository }}/${{ env.DEPLOYMENT }}/web-${{ env.PLATFORM_PAIR }}/,region=${{ env.RUNS_ON_AWS_REGION }},bucket=${{ env.RUNS_ON_S3_BUCKET_CACHE }},mode=max
+          # no-cache needed due to weird interactions with the builds for different platforms
+          # NOTE(rkuo): this may not be true any more with the proper cache prefixing by architecture - currently testing with it off
+          
+      - name: Export digest
+        run: |
+          mkdir -p /tmp/digests
+          digest="${{ steps.build.outputs.digest }}"
+          touch "/tmp/digests/${digest#sha256:}"
+
+      - name: Upload digest
+        uses: actions/upload-artifact@v4
+        with:
+          name: web-digests-${{ env.PLATFORM_PAIR }}-${{ github.run_id }}
+          path: /tmp/digests/*
+          if-no-files-found: error
+          retention-days: 1
+
+  merge:
+    needs:
+      - build
+    if: needs.precheck.outputs.should-run == 'true'
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check if stable release version
+        id: check_version
+        run: |
+          if [[ "${{ github.ref_name }}" =~ ^v[0-9]+\.[0-9]+\.[0-9]+$ ]] && [[ "${{ github.ref_name }}" != *"cloud"* ]]; then
+            echo "is_stable=true" >> $GITHUB_OUTPUT
+          else
+            echo "is_stable=false" >> $GITHUB_OUTPUT
+          fi
+          if [[ "${{ github.ref_name }}" =~ ^v[0-9]+\.[0-9]+\.[0-9]+-beta\.[0-9]+$ ]]; then
+            echo "is_beta=true" >> $GITHUB_OUTPUT
+          else
+            echo "is_beta=false" >> $GITHUB_OUTPUT
+          fi
+        
+      - name: Download digests
+        uses: actions/download-artifact@v4
+        with:
+          path: /tmp/digests
+          pattern: web-digests-*-${{ github.run_id }}
+          merge-multiple: true
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Docker meta
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.REGISTRY_IMAGE }}
+          flavor: |
+            latest=false
+          tags: |
+            type=raw,value=${{ github.ref_name }}
+            type=raw,value=${{ steps.check_version.outputs.is_stable == 'true' && 'latest' || '' }}
+            type=raw,value=${{ env.EDGE_TAG == 'true' && 'edge' || '' }}
+            type=raw,value=${{ steps.check_version.outputs.is_beta == 'true' && 'beta' || '' }}
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Create manifest list and push
+        working-directory: /tmp/digests
+        run: |
+          docker buildx imagetools create $(jq -cr '.tags | map("-t " + .) | join(" ")' <<< "$DOCKER_METADATA_OUTPUT_JSON") \
+            $(printf '${{ env.REGISTRY_IMAGE }}@sha256:%s ' *)
+
+      - name: Inspect image
+        run: |
+          docker buildx imagetools inspect ${{ env.REGISTRY_IMAGE }}:${{ steps.meta.outputs.version }}
+
+      # trivy has their own rate limiting issues causing this action to flake
+      # we worked around it by hardcoding to different db repos in env
+      # can re-enable when they figure it out
+      # https://github.com/aquasecurity/trivy/discussions/7538
+      # https://github.com/aquasecurity/trivy-action/issues/389
+      - name: Run Trivy vulnerability scanner
+        uses: nick-fields/retry@v3
+        with:
+          timeout_minutes: 30
+          max_attempts: 3
+          retry_wait_seconds: 10
+          command: |
+            docker run --rm -v $HOME/.cache/trivy:/root/.cache/trivy \
+              -e TRIVY_DB_REPOSITORY="public.ecr.aws/aquasecurity/trivy-db:2" \
+              -e TRIVY_JAVA_DB_REPOSITORY="public.ecr.aws/aquasecurity/trivy-java-db:1" \
+              -e TRIVY_USERNAME="${{ secrets.DOCKER_USERNAME }}" \
+              -e TRIVY_PASSWORD="${{ secrets.DOCKER_TOKEN }}" \
+              aquasec/trivy@sha256:a22415a38938a56c379387a8163fcb0ce38b10ace73e593475d3658d578b2436 \
+              image \
+              --skip-version-check \
+              --timeout 20m \
+              --severity CRITICAL,HIGH \
+              docker.io/${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}

.github/workflows/docker-tag-beta.yml

@@ -0,0 +1,41 @@
+# This workflow is set up to be manually triggered via the GitHub Action tab.
+# Given a version, it will tag those backend and webserver images as "beta".
+
+name: Tag Beta Version
+
+on:
+  workflow_dispatch:
+    inputs:
+      version:
+        description: "The version (ie v1.0.0-beta.0) to tag as beta"
+        required: true
+
+jobs:
+  tag:
+    # See https://runs-on.com/runners/linux/
+    # use a lower powered instance since this just does i/o to docker hub
+    runs-on: [runs-on, runner=2cpu-linux-x64, "run-id=${{ github.run_id }}"]
+    steps:
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v1
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v1
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Enable Docker CLI experimental features
+        run: echo "DOCKER_CLI_EXPERIMENTAL=enabled" >> $GITHUB_ENV
+
+      - name: Pull, Tag and Push Web Server Image
+        run: |
+          docker buildx imagetools create -t onyxdotapp/onyx-web-server:beta onyxdotapp/onyx-web-server:${{ github.event.inputs.version }}
+
+      - name: Pull, Tag and Push API Server Image
+        run: |
+          docker buildx imagetools create -t onyxdotapp/onyx-backend:beta onyxdotapp/onyx-backend:${{ github.event.inputs.version }}
+
+      - name: Pull, Tag and Push Model Server Image
+        run: |
+          docker buildx imagetools create -t onyxdotapp/onyx-model-server:beta onyxdotapp/onyx-model-server:${{ github.event.inputs.version }}

.github/workflows/docker-tag-latest.yml

@@ -1,40 +1,41 @@
+# This workflow is set up to be manually triggered via the GitHub Action tab.
+# Given a version, it will tag those backend and webserver images as "latest".
+
 name: Tag Latest Version
 
 on:
   workflow_dispatch:
     inputs:
       version:
-        description: 'The version (ie v0.0.1) to tag as latest'
+        description: "The version (ie v0.0.1) to tag as latest"
         required: true
 
 jobs:
   tag:
-    runs-on: ubuntu-latest
+    # See https://runs-on.com/runners/linux/
+    # use a lower powered instance since this just does i/o to docker hub
+    runs-on: [runs-on, runner=2cpu-linux-x64, "run-id=${{ github.run_id }}"]
     steps:
-    - name: Set up Docker Buildx
-      uses: docker/setup-buildx-action@v1
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v1
 
-    - name: Login to Docker Hub
-      uses: docker/login-action@v1
-      with:
-        username: ${{ secrets.DOCKER_USERNAME }}
-        password: ${{ secrets.DOCKER_TOKEN }}
+      - name: Login to Docker Hub
+        uses: docker/login-action@v1
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
 
-    - name: Enable Docker CLI experimental features
-      run: echo "DOCKER_CLI_EXPERIMENTAL=enabled" >> $GITHUB_ENV
+      - name: Enable Docker CLI experimental features
+        run: echo "DOCKER_CLI_EXPERIMENTAL=enabled" >> $GITHUB_ENV
 
-    - name: Pull, Tag and Push Web Server Image
-      run: |
-        docker pull danswer/danswer-web-server:${{ github.event.inputs.version }}
-        docker tag danswer/danswer-web-server:${{ github.event.inputs.version }} danswer/danswer-web-server:latest
-        docker push danswer/danswer-web-server:latest
-        docker manifest create danswer/danswer-web-server:latest danswer/danswer-web-server:latest
-        docker manifest push danswer/danswer-web-server:latest
+      - name: Pull, Tag and Push Web Server Image
+        run: |
+          docker buildx imagetools create -t onyxdotapp/onyx-web-server:latest onyxdotapp/onyx-web-server:${{ github.event.inputs.version }}
 
-    - name: Pull, Tag and Push API Server Image
-      run: |
-        docker pull danswer/danswer-backend:${{ github.event.inputs.version }}
-        docker tag danswer/danswer-backend:${{ github.event.inputs.version }} danswer/danswer-backend:latest
-        docker push danswer/danswer-backend:latest
-        docker manifest create danswer/danswer-backend:latest danswer/danswer-backend:latest
-        docker manifest push danswer/danswer-backend:latest
+      - name: Pull, Tag and Push API Server Image
+        run: |
+          docker buildx imagetools create -t onyxdotapp/onyx-backend:latest onyxdotapp/onyx-backend:${{ github.event.inputs.version }}
+
+      - name: Pull, Tag and Push Model Server Image
+        run: |
+          docker buildx imagetools create -t onyxdotapp/onyx-model-server:latest onyxdotapp/onyx-model-server:${{ github.event.inputs.version }}

.github/workflows/helm-chart-releases.yml

@@ -0,0 +1,52 @@
+name: Release Onyx Helm Charts
+
+on:
+  push:
+    branches:
+      - main
+
+permissions: write-all
+
+jobs:
+  release:
+    permissions:
+      contents: write
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Install Helm CLI
+        uses: azure/setup-helm@v4
+        with:
+          version: v3.12.1
+
+      - name: Add required Helm repositories
+        run: |
+          helm repo add ingress-nginx https://kubernetes.github.io/ingress-nginx
+          helm repo add onyx-vespa https://onyx-dot-app.github.io/vespa-helm-charts
+          helm repo add cloudnative-pg https://cloudnative-pg.github.io/charts
+          helm repo add ot-container-kit https://ot-container-kit.github.io/helm-charts
+          helm repo add minio https://charts.min.io/
+          helm repo update
+
+      - name: Build chart dependencies
+        run: |
+          set -euo pipefail
+          for chart_dir in deployment/helm/charts/*; do
+            if [ -f "$chart_dir/Chart.yaml" ]; then
+              echo "Building dependencies for $chart_dir"
+              helm dependency build "$chart_dir"
+            fi
+          done
+
+      - name: Publish Helm charts to gh-pages
+        uses: stefanprodan/helm-gh-pages@v1.7.0
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          charts_dir: deployment/helm/charts
+          branch: gh-pages
+          commit_username: ${{ github.actor }}
+          commit_email: ${{ github.actor }}@users.noreply.github.com

.github/workflows/nightly-close-stale-issues.yml

@@ -0,0 +1,23 @@
+name: 'Nightly - Close stale issues and PRs'
+on:
+  schedule:
+    - cron: '0 11 * * *' # Runs every day at 3 AM PST / 4 AM PDT / 11 AM UTC
+
+permissions:
+  # contents: write # only for delete-branch option
+  issues: write
+  pull-requests: write
+  
+jobs:
+  stale:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/stale@v9
+        with:
+          stale-issue-message: 'This issue is stale because it has been open 75 days with no activity. Remove stale label or comment or this will be closed in 15 days.'
+          stale-pr-message: 'This PR is stale because it has been open 75 days with no activity. Remove stale label or comment or this will be closed in 15 days.'
+          close-issue-message: 'This issue was closed because it has been stalled for 90 days with no activity.'
+          close-pr-message: 'This PR was closed because it has been stalled for 90 days with no activity.'
+          days-before-stale: 75
+#           days-before-close: 90  # uncomment after we test stale behavior
+          

.github/workflows/nightly-scan-licenses.yml

@@ -0,0 +1,142 @@
+# Scan for problematic software licenses
+
+# trivy has their own rate limiting issues causing this action to flake
+# we worked around it by hardcoding to different db repos in env
+# can re-enable when they figure it out
+# https://github.com/aquasecurity/trivy/discussions/7538
+# https://github.com/aquasecurity/trivy-action/issues/389
+
+name: 'Nightly - Scan licenses'
+on:
+#   schedule:
+#     - cron: '0 14 * * *'  # Runs every day at 6 AM PST / 7 AM PDT / 2 PM UTC
+  workflow_dispatch:  # Allows manual triggering
+
+permissions:
+  actions: read
+  contents: read
+  security-events: write
+  
+jobs:
+  scan-licenses:
+    # See https://runs-on.com/runners/linux/
+    runs-on: [runs-on,runner=2cpu-linux-x64,"run-id=${{ github.run_id }}"]
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+          cache: 'pip'
+          cache-dependency-path: |
+            backend/requirements/default.txt
+            backend/requirements/dev.txt
+            backend/requirements/model_server.txt
+      
+      - name: Get explicit and transitive dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install --retries 5 --timeout 30 -r backend/requirements/default.txt
+          pip install --retries 5 --timeout 30 -r backend/requirements/dev.txt
+          pip install --retries 5 --timeout 30 -r backend/requirements/model_server.txt
+          pip freeze > requirements-all.txt
+                    
+      - name: Check python
+        id: license_check_report
+        uses: pilosus/action-pip-license-checker@v2
+        with:
+          requirements: 'requirements-all.txt'
+          fail: 'Copyleft'
+          exclude: '(?i)^(pylint|aio[-_]*).*'
+          
+      - name: Print report
+        if: always()
+        run: echo "${{ steps.license_check_report.outputs.report }}"
+      
+      - name: Install npm dependencies
+        working-directory: ./web
+        run: npm ci
+
+        # be careful enabling the sarif and upload as it may spam the security tab
+        # with a huge amount of items. Work out the issues before enabling upload.       
+#       - name: Run Trivy vulnerability scanner in repo mode
+#         if: always()
+#         uses: aquasecurity/trivy-action@0.29.0
+#         with:
+#           scan-type: fs
+#           scan-ref: .
+#           scanners: license
+#           format: table
+#           severity: HIGH,CRITICAL
+# #           format: sarif
+# #           output: trivy-results.sarif
+# 
+# #       - name: Upload Trivy scan results to GitHub Security tab
+# #         uses: github/codeql-action/upload-sarif@v3
+# #         with:
+# #           sarif_file: trivy-results.sarif
+
+  scan-trivy:
+    # See https://runs-on.com/runners/linux/
+    runs-on: [runs-on,runner=2cpu-linux-x64,"run-id=${{ github.run_id }}"]
+      
+    steps:
+    - name: Set up Docker Buildx
+      uses: docker/setup-buildx-action@v3
+
+    - name: Login to Docker Hub
+      uses: docker/login-action@v3
+      with:
+        username: ${{ secrets.DOCKER_USERNAME }}
+        password: ${{ secrets.DOCKER_TOKEN }}
+
+    # Backend
+    - name: Pull backend docker image
+      run: docker pull onyxdotapp/onyx-backend:latest
+
+    - name: Run Trivy vulnerability scanner on backend
+      uses: aquasecurity/trivy-action@0.29.0
+      env:
+        TRIVY_DB_REPOSITORY: 'public.ecr.aws/aquasecurity/trivy-db:2'
+        TRIVY_JAVA_DB_REPOSITORY: 'public.ecr.aws/aquasecurity/trivy-java-db:1'
+      with:
+        image-ref: onyxdotapp/onyx-backend:latest
+        scanners: license
+        severity: HIGH,CRITICAL
+        vuln-type: library
+        exit-code: 0  # Set to 1 if we want a failed scan to fail the workflow
+
+    # Web server
+    - name: Pull web server docker image
+      run: docker pull onyxdotapp/onyx-web-server:latest
+          
+    - name: Run Trivy vulnerability scanner on web server
+      uses: aquasecurity/trivy-action@0.29.0
+      env:
+        TRIVY_DB_REPOSITORY: 'public.ecr.aws/aquasecurity/trivy-db:2'
+        TRIVY_JAVA_DB_REPOSITORY: 'public.ecr.aws/aquasecurity/trivy-java-db:1'
+      with:
+        image-ref: onyxdotapp/onyx-web-server:latest
+        scanners: license
+        severity: HIGH,CRITICAL
+        vuln-type: library
+        exit-code: 0
+
+    # Model server
+    - name: Pull model server docker image
+      run: docker pull onyxdotapp/onyx-model-server:latest
+
+    - name: Run Trivy vulnerability scanner
+      uses: aquasecurity/trivy-action@0.29.0
+      env:
+        TRIVY_DB_REPOSITORY: 'public.ecr.aws/aquasecurity/trivy-db:2'
+        TRIVY_JAVA_DB_REPOSITORY: 'public.ecr.aws/aquasecurity/trivy-java-db:1'
+      with:
+        image-ref: onyxdotapp/onyx-model-server:latest
+        scanners: license
+        severity: HIGH,CRITICAL
+        vuln-type: library
+        exit-code: 0

.github/workflows/pr-external-dependency-unit-tests.yml

@@ -0,0 +1,110 @@
+name: External Dependency Unit Tests
+
+on:
+  merge_group:
+  pull_request:
+    branches: [main]
+
+env:
+  # AWS
+  S3_AWS_ACCESS_KEY_ID: ${{ secrets.S3_AWS_ACCESS_KEY_ID }}
+  S3_AWS_SECRET_ACCESS_KEY: ${{ secrets.S3_AWS_SECRET_ACCESS_KEY }}
+
+  # MinIO
+  S3_ENDPOINT_URL: "http://localhost:9004"
+
+  # Confluence
+  CONFLUENCE_TEST_SPACE_URL: ${{ vars.CONFLUENCE_TEST_SPACE_URL }}
+  CONFLUENCE_TEST_SPACE: ${{ vars.CONFLUENCE_TEST_SPACE }}
+  CONFLUENCE_TEST_PAGE_ID: ${{ secrets.CONFLUENCE_TEST_PAGE_ID }}
+  CONFLUENCE_USER_NAME: ${{ vars.CONFLUENCE_USER_NAME }}
+  CONFLUENCE_ACCESS_TOKEN: ${{ secrets.CONFLUENCE_ACCESS_TOKEN }}
+  CONFLUENCE_ACCESS_TOKEN_SCOPED: ${{ secrets.CONFLUENCE_ACCESS_TOKEN_SCOPED }}
+
+  # LLMs
+  OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
+  ANTHROPIC_API_KEY: ${{ secrets.ANTHROPIC_API_KEY }}
+
+jobs:
+  discover-test-dirs:
+    runs-on: ubuntu-latest
+    outputs:
+      test-dirs: ${{ steps.set-matrix.outputs.test-dirs }}
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+      
+      - name: Discover test directories
+        id: set-matrix
+        run: |
+          # Find all subdirectories in backend/tests/external_dependency_unit
+          dirs=$(find backend/tests/external_dependency_unit -mindepth 1 -maxdepth 1 -type d -exec basename {} \; | sort | jq -R -s -c 'split("\n")[:-1]')
+          echo "test-dirs=$dirs" >> $GITHUB_OUTPUT
+
+  external-dependency-unit-tests:
+    needs: discover-test-dirs
+    # Use larger runner with more resources for Vespa
+    runs-on: [runs-on, runner=16cpu-linux-x64, "run-id=${{ github.run_id }}"]
+    
+    strategy:
+      fail-fast: false
+      matrix:
+        test-dir: ${{ fromJson(needs.discover-test-dirs.outputs.test-dirs) }}
+
+    env:
+      PYTHONPATH: ./backend
+      MODEL_SERVER_HOST: "disabled"
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+          cache: "pip"
+          cache-dependency-path: |
+            backend/requirements/default.txt
+            backend/requirements/dev.txt
+
+      - name: Install Dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install --retries 5 --timeout 30 -r backend/requirements/default.txt
+          pip install --retries 5 --timeout 30 -r backend/requirements/dev.txt
+          playwright install chromium
+          playwright install-deps chromium
+
+      - name: Set up Standard Dependencies
+        run: |
+          cd deployment/docker_compose
+          docker compose -f docker-compose.yml -f docker-compose.dev.yml up -d minio relational_db cache index
+
+      - name: Wait for services
+        run: |
+          echo "Waiting for services to be ready..."
+          sleep 30
+          
+          # Wait for Vespa specifically
+          echo "Waiting for Vespa to be ready..."
+          timeout 300 bash -c 'until curl -f -s http://localhost:8081/ApplicationStatus > /dev/null 2>&1; do echo "Vespa not ready, waiting..."; sleep 10; done' || echo "Vespa timeout - continuing anyway"
+          
+          echo "Services should be ready now"
+
+      - name: Run migrations
+        run: |
+          cd backend
+          # Run migrations to head
+          alembic upgrade head
+          alembic heads --verbose
+
+      - name: Run Tests for ${{ matrix.test-dir }}
+        shell: script -q -e -c "bash --noprofile --norc -eo pipefail {0}"
+        run: |
+          py.test \
+            --durations=8 \
+            -o junit_family=xunit2 \
+            -xv \
+            --ff \
+            backend/tests/external_dependency_unit/${{ matrix.test-dir }}

.github/workflows/pr-helm-chart-testing.yml

@@ -0,0 +1,228 @@
+name: Helm - Lint and Test Charts
+
+on:
+  merge_group:
+  pull_request:
+    branches: [ main ]
+  workflow_dispatch:  # Allows manual triggering
+  
+jobs:
+  helm-chart-check:
+    # See https://runs-on.com/runners/linux/
+    runs-on: [runs-on,runner=8cpu-linux-x64,hdd=256,"run-id=${{ github.run_id }}"]
+
+    # fetch-depth 0 is required for helm/chart-testing-action
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
+        
+    - name: Set up Helm
+      uses: azure/setup-helm@v4.3.1
+      with:
+        version: v3.19.0
+      
+    - name: Set up chart-testing
+      uses: helm/chart-testing-action@v2.7.0
+
+    # even though we specify chart-dirs in ct.yaml, it isn't used by ct for the list-changed command...
+    - name: Run chart-testing (list-changed)
+      id: list-changed
+      run: |
+        echo "default_branch: ${{ github.event.repository.default_branch }}"
+        changed=$(ct list-changed --remote origin --target-branch ${{ github.event.repository.default_branch }} --chart-dirs deployment/helm/charts)
+        echo "list-changed output: $changed"
+        if [[ -n "$changed" ]]; then
+          echo "changed=true" >> "$GITHUB_OUTPUT"
+        fi
+
+    # uncomment to force run chart-testing
+#     - name: Force run chart-testing (list-changed)
+#       id: list-changed
+#       run: echo "changed=true" >> $GITHUB_OUTPUT
+        
+    # lint all charts if any changes were detected
+    - name: Run chart-testing (lint)
+      if: steps.list-changed.outputs.changed == 'true'
+      run: ct lint --config ct.yaml --all
+      # the following would lint only changed charts, but linting isn't expensive
+      # run: ct lint --config ct.yaml --target-branch ${{ github.event.repository.default_branch }}
+
+    - name: Create kind cluster
+      if: steps.list-changed.outputs.changed == 'true'
+      uses: helm/kind-action@v1.12.0
+
+    - name: Pre-install cluster status check
+      if: steps.list-changed.outputs.changed == 'true'
+      run: |
+        echo "=== Pre-install Cluster Status ==="
+        kubectl get nodes -o wide
+        kubectl get pods --all-namespaces
+        kubectl get storageclass
+
+    - name: Add Helm repositories and update
+      if: steps.list-changed.outputs.changed == 'true'
+      run: |
+        echo "=== Adding Helm repositories ==="
+        helm repo add ingress-nginx https://kubernetes.github.io/ingress-nginx
+        helm repo add vespa https://onyx-dot-app.github.io/vespa-helm-charts
+        helm repo add cloudnative-pg https://cloudnative-pg.github.io/charts
+        helm repo add ot-container-kit https://ot-container-kit.github.io/helm-charts
+        helm repo add minio https://charts.min.io/
+        helm repo update
+
+    - name: Install Redis operator
+      if: steps.list-changed.outputs.changed == 'true'
+      shell: bash
+      run: |
+        echo "=== Installing redis-operator CRDs ==="
+        helm upgrade --install redis-operator ot-container-kit/redis-operator \
+          --namespace redis-operator --create-namespace --wait --timeout 300s
+
+    - name: Pre-pull required images
+      if: steps.list-changed.outputs.changed == 'true'
+      run: |
+        echo "=== Pre-pulling required images to avoid timeout ==="
+        KIND_CLUSTER=$(kubectl config current-context | sed 's/kind-//')
+        echo "Kind cluster: $KIND_CLUSTER"
+
+        IMAGES=(
+          "ghcr.io/cloudnative-pg/cloudnative-pg:1.27.0"
+          "quay.io/opstree/redis:v7.0.15"
+          "docker.io/onyxdotapp/onyx-web-server:latest"
+        )
+
+        for image in "${IMAGES[@]}"; do
+          echo "Pre-pulling $image"
+          if docker pull "$image"; then
+            kind load docker-image "$image" --name "$KIND_CLUSTER" || echo "Failed to load $image into kind"
+          else
+            echo "Failed to pull $image"
+          fi
+        done
+
+        echo "=== Images loaded into Kind cluster ==="
+        docker exec "$KIND_CLUSTER"-control-plane crictl images | grep -E "(cloudnative-pg|redis|onyx)" || echo "Some images may still be loading..."
+
+    - name: Validate chart dependencies
+      if: steps.list-changed.outputs.changed == 'true'
+      run: |
+        echo "=== Validating chart dependencies ==="
+        cd deployment/helm/charts/onyx
+        helm dependency update
+        helm lint .
+
+    - name: Run chart-testing (install) with enhanced monitoring
+      timeout-minutes: 25
+      if: steps.list-changed.outputs.changed == 'true'
+      run: |
+        echo "=== Starting chart installation with monitoring ==="
+        
+        # Function to monitor cluster state
+        monitor_cluster() {
+          while true; do
+            echo "=== Cluster Status Check at $(date) ==="
+            # Only show non-running pods to reduce noise
+            NON_RUNNING_PODS=$(kubectl get pods --all-namespaces --field-selector=status.phase!=Running,status.phase!=Succeeded --no-headers 2>/dev/null | wc -l)
+            if [ "$NON_RUNNING_PODS" -gt 0 ]; then
+              echo "Non-running pods:"
+              kubectl get pods --all-namespaces --field-selector=status.phase!=Running,status.phase!=Succeeded
+            else
+              echo "All pods running successfully"
+            fi
+            # Only show recent events if there are issues
+            RECENT_EVENTS=$(kubectl get events --sort-by=.lastTimestamp --all-namespaces --field-selector=type!=Normal 2>/dev/null | tail -5)
+            if [ -n "$RECENT_EVENTS" ]; then
+              echo "Recent warnings/errors:"
+              echo "$RECENT_EVENTS"
+            fi
+            sleep 60
+          done
+        }
+        
+        # Start monitoring in background
+        monitor_cluster &
+        MONITOR_PID=$!
+        
+        # Set up cleanup
+        cleanup() {
+          echo "=== Cleaning up monitoring process ==="
+          kill $MONITOR_PID 2>/dev/null || true
+          echo "=== Final cluster state ==="
+          kubectl get pods --all-namespaces
+          kubectl get events --all-namespaces --sort-by=.lastTimestamp | tail -20
+        }
+        
+        # Trap cleanup on exit
+        trap cleanup EXIT
+        
+        # Run the actual installation with detailed logging
+        echo "=== Starting ct install ==="
+        set +e
+        ct install --all \
+          --helm-extra-set-args="\
+            --set=nginx.enabled=false \
+            --set=minio.enabled=false \
+            --set=vespa.enabled=false \
+            --set=slackbot.enabled=false \
+            --set=postgresql.enabled=true \
+            --set=postgresql.nameOverride=cloudnative-pg \
+            --set=postgresql.cluster.storage.storageClass=standard \
+            --set=redis.enabled=true \
+            --set=redis.storageSpec.volumeClaimTemplate.spec.storageClassName=standard \
+            --set=webserver.replicaCount=1 \
+            --set=api.replicaCount=0 \
+            --set=inferenceCapability.replicaCount=0 \
+            --set=indexCapability.replicaCount=0 \
+            --set=celery_beat.replicaCount=0 \
+            --set=celery_worker_heavy.replicaCount=0 \
+            --set=celery_worker_docfetching.replicaCount=0 \
+            --set=celery_worker_docprocessing.replicaCount=0 \
+            --set=celery_worker_light.replicaCount=0 \
+            --set=celery_worker_monitoring.replicaCount=0 \
+            --set=celery_worker_primary.replicaCount=0 \
+            --set=celery_worker_user_file_processing.replicaCount=0 \
+            --set=celery_worker_user_files_indexing.replicaCount=0" \
+          --helm-extra-args="--timeout 900s --debug" \
+          --debug --config ct.yaml
+        CT_EXIT=$?
+        set -e
+
+        if [[ $CT_EXIT -ne 0 ]]; then
+          echo "ct install failed with exit code $CT_EXIT"
+          exit $CT_EXIT
+        else
+          echo "=== Installation completed successfully ==="
+        fi
+
+        kubectl get pods --all-namespaces
+
+    - name: Post-install verification
+      if: steps.list-changed.outputs.changed == 'true'
+      run: |
+        echo "=== Post-install verification ==="
+        kubectl get pods --all-namespaces
+        kubectl get services --all-namespaces
+        # Only show issues if they exist
+        kubectl describe pods --all-namespaces | grep -A 5 -B 2 "Failed\|Error\|Warning" || echo "No pod issues found"
+
+    - name: Cleanup on failure
+      if: failure() && steps.list-changed.outputs.changed == 'true'
+      run: |
+        echo "=== Cleanup on failure ==="
+        echo "=== Final cluster state ==="
+        kubectl get pods --all-namespaces
+        kubectl get events --all-namespaces --sort-by=.lastTimestamp | tail -10
+        
+        echo "=== Pod descriptions for debugging ==="
+        kubectl describe pods --all-namespaces | grep -A 10 -B 3 "Failed\|Error\|Warning\|Pending" || echo "No problematic pods found"
+        
+        echo "=== Recent logs for debugging ==="
+        kubectl logs --all-namespaces --tail=50 | grep -i "error\|timeout\|failed\|pull" || echo "No error logs found"
+
+        echo "=== Helm releases ==="
+        helm list --all-namespaces
+      # the following would install only changed charts, but we only have one chart so 
+      # don't worry about that for now
+      # run: ct install --target-branch ${{ github.event.repository.default_branch }}

.github/workflows/pr-integration-tests.yml

@@ -0,0 +1,500 @@
+name: Run Integration Tests v2
+concurrency:
+  group: Run-Integration-Tests-${{ github.workflow }}-${{ github.head_ref || github.event.workflow_run.head_branch || github.run_id }}
+  cancel-in-progress: true
+
+on:
+  merge_group:
+  pull_request:
+    branches:
+      - main
+      - "release/**"
+
+env:
+  # Private Registry Configuration
+  PRIVATE_REGISTRY: experimental-registry.blacksmith.sh:5000
+  PRIVATE_REGISTRY_USERNAME: ${{ secrets.PRIVATE_REGISTRY_USERNAME }}
+  PRIVATE_REGISTRY_PASSWORD: ${{ secrets.PRIVATE_REGISTRY_PASSWORD }}
+
+  # Test Environment Variables
+  OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
+  SLACK_BOT_TOKEN: ${{ secrets.SLACK_BOT_TOKEN }}
+  CONFLUENCE_TEST_SPACE_URL: ${{ vars.CONFLUENCE_TEST_SPACE_URL }}
+  CONFLUENCE_USER_NAME: ${{ vars.CONFLUENCE_USER_NAME }}
+  CONFLUENCE_ACCESS_TOKEN: ${{ secrets.CONFLUENCE_ACCESS_TOKEN }}
+  CONFLUENCE_ACCESS_TOKEN_SCOPED: ${{ secrets.CONFLUENCE_ACCESS_TOKEN_SCOPED }}
+  JIRA_BASE_URL: ${{ secrets.JIRA_BASE_URL }}
+  JIRA_USER_EMAIL: ${{ secrets.JIRA_USER_EMAIL }}
+  JIRA_API_TOKEN: ${{ secrets.JIRA_API_TOKEN }}
+  JIRA_API_TOKEN_SCOPED: ${{ secrets.JIRA_API_TOKEN_SCOPED }}
+  PERM_SYNC_SHAREPOINT_CLIENT_ID: ${{ secrets.PERM_SYNC_SHAREPOINT_CLIENT_ID }}
+  PERM_SYNC_SHAREPOINT_PRIVATE_KEY: ${{ secrets.PERM_SYNC_SHAREPOINT_PRIVATE_KEY }}
+  PERM_SYNC_SHAREPOINT_CERTIFICATE_PASSWORD: ${{ secrets.PERM_SYNC_SHAREPOINT_CERTIFICATE_PASSWORD }}
+  PERM_SYNC_SHAREPOINT_DIRECTORY_ID: ${{ secrets.PERM_SYNC_SHAREPOINT_DIRECTORY_ID }}
+  EXA_API_KEY: ${{ secrets.EXA_API_KEY }}
+
+jobs:
+  discover-test-dirs:
+    runs-on: blacksmith-2vcpu-ubuntu-2404-arm
+    outputs:
+      test-dirs: ${{ steps.set-matrix.outputs.test-dirs }}
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Discover test directories
+        id: set-matrix
+        run: |
+          # Find all leaf-level directories in both test directories
+          tests_dirs=$(find backend/tests/integration/tests -mindepth 1 -maxdepth 1 -type d ! -name "__pycache__" -exec basename {} \; | sort)
+          connector_dirs=$(find backend/tests/integration/connector_job_tests -mindepth 1 -maxdepth 1 -type d ! -name "__pycache__" -exec basename {} \; | sort)
+
+          # Create JSON array with directory info
+          all_dirs=""
+          for dir in $tests_dirs; do
+            all_dirs="$all_dirs{\"path\":\"tests/$dir\",\"name\":\"tests-$dir\"},"
+          done
+          for dir in $connector_dirs; do
+            all_dirs="$all_dirs{\"path\":\"connector_job_tests/$dir\",\"name\":\"connector-$dir\"},"
+          done
+
+          # Remove trailing comma and wrap in array
+          all_dirs="[${all_dirs%,}]"
+          echo "test-dirs=$all_dirs" >> $GITHUB_OUTPUT
+
+  prepare-build:
+    runs-on: blacksmith-2vcpu-ubuntu-2404-arm
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Prepare build
+        uses: ./.github/actions/prepare-build
+
+  build-backend-image:
+    runs-on: blacksmith-16vcpu-ubuntu-2404-arm
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Login to Private Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.PRIVATE_REGISTRY }}
+          username: ${{ env.PRIVATE_REGISTRY_USERNAME }}
+          password: ${{ env.PRIVATE_REGISTRY_PASSWORD }}
+
+      - name: Set up Docker Buildx
+        uses: useblacksmith/setup-docker-builder@v1
+
+      - name: Build and push Backend Docker image
+        uses: useblacksmith/build-push-action@v2
+        with:
+          context: ./backend
+          file: ./backend/Dockerfile
+          platforms: linux/arm64
+          tags: ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-backend:test-${{ github.run_id }}
+          push: true
+          outputs: type=registry
+          no-cache: true
+
+
+  build-model-server-image:
+    runs-on: blacksmith-16vcpu-ubuntu-2404-arm
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Login to Private Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.PRIVATE_REGISTRY }}
+          username: ${{ env.PRIVATE_REGISTRY_USERNAME }}
+          password: ${{ env.PRIVATE_REGISTRY_PASSWORD }}
+
+      - name: Set up Docker Buildx
+        uses: useblacksmith/setup-docker-builder@v1
+
+      - name: Build and push Model Server Docker image
+        uses: useblacksmith/build-push-action@v2
+        with:
+          context: ./backend
+          file: ./backend/Dockerfile.model_server
+          platforms: linux/arm64
+          tags: ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-model-server:test-${{ github.run_id }}
+          push: true
+          outputs: type=registry
+          provenance: false
+          no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
+
+
+  build-integration-image:
+    needs: prepare-build
+    runs-on: blacksmith-16vcpu-ubuntu-2404-arm
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Login to Private Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.PRIVATE_REGISTRY }}
+          username: ${{ env.PRIVATE_REGISTRY_USERNAME }}
+          password: ${{ env.PRIVATE_REGISTRY_PASSWORD }}
+
+      - name: Download OpenAPI artifacts
+        uses: actions/download-artifact@v4
+        with:
+          name: openapi-artifacts
+          path: backend/generated/
+
+      - name: Set up Docker Buildx
+        uses: useblacksmith/setup-docker-builder@v1
+
+      - name: Build and push integration test image with Docker Bake
+        env:
+          REGISTRY: ${{ env.PRIVATE_REGISTRY }}
+          TAG: test-${{ github.run_id }}
+        run: cd backend && docker buildx bake --no-cache --push integration
+
+  integration-tests:
+    needs:
+      [
+        discover-test-dirs,
+        build-backend-image,
+        build-model-server-image,
+        build-integration-image,
+      ]
+    runs-on: blacksmith-8vcpu-ubuntu-2404-arm
+
+    strategy:
+      fail-fast: false
+      matrix:
+        test-dir: ${{ fromJson(needs.discover-test-dirs.outputs.test-dirs) }}
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Login to Private Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.PRIVATE_REGISTRY }}
+          username: ${{ env.PRIVATE_REGISTRY_USERNAME }}
+          password: ${{ env.PRIVATE_REGISTRY_PASSWORD }}
+
+      # needed for pulling Vespa, Redis, Postgres, and Minio images
+      # otherwise, we hit the "Unauthenticated users" limit
+      # https://docs.docker.com/docker-hub/usage/
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Pull Docker images
+        run: |
+          # Pull all images from registry in parallel
+          echo "Pulling Docker images in parallel..."
+          # Pull images from private registry
+          (docker pull --platform linux/arm64 ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-backend:test-${{ github.run_id }}) &
+          (docker pull --platform linux/arm64 ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-model-server:test-${{ github.run_id }}) &
+          (docker pull --platform linux/arm64 ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-integration:test-${{ github.run_id }}) &
+
+          # Wait for all background jobs to complete
+          wait
+          echo "All Docker images pulled successfully"
+
+          # Re-tag to remove registry prefix for docker-compose
+          docker tag ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-backend:test-${{ github.run_id }} onyxdotapp/onyx-backend:test
+          docker tag ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-model-server:test-${{ github.run_id }} onyxdotapp/onyx-model-server:test
+          docker tag ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-integration:test-${{ github.run_id }} onyxdotapp/onyx-integration:test
+
+      # NOTE: Use pre-ping/null pool to reduce flakiness due to dropped connections
+      # NOTE: don't need web server for integration tests
+      - name: Start Docker containers
+        run: |
+          cd deployment/docker_compose
+          ENABLE_PAID_ENTERPRISE_EDITION_FEATURES=true \
+          AUTH_TYPE=basic \
+          POSTGRES_POOL_PRE_PING=true \
+          POSTGRES_USE_NULL_POOL=true \
+          REQUIRE_EMAIL_VERIFICATION=false \
+          DISABLE_TELEMETRY=true \
+          IMAGE_TAG=test \
+          INTEGRATION_TESTS_MODE=true \
+          CHECK_TTL_MANAGEMENT_TASK_FREQUENCY_IN_HOURS=0.001 \
+          docker compose -f docker-compose.yml -f docker-compose.dev.yml up \
+            relational_db \
+            index \
+            cache \
+            minio \
+            api_server \
+            inference_model_server \
+            indexing_model_server \
+            background \
+            -d
+        id: start_docker
+
+      - name: Wait for service to be ready
+        run: |
+          echo "Starting wait-for-service script..."
+
+          docker logs -f onyx-api_server-1 &
+
+          start_time=$(date +%s)
+          timeout=300  # 5 minutes in seconds
+
+          while true; do
+            current_time=$(date +%s)
+            elapsed_time=$((current_time - start_time))
+            
+            if [ $elapsed_time -ge $timeout ]; then
+              echo "Timeout reached. Service did not become ready in 5 minutes."
+              exit 1
+            fi
+            
+            # Use curl with error handling to ignore specific exit code 56
+            response=$(curl -s -o /dev/null -w "%{http_code}" http://localhost:8080/health || echo "curl_error")
+            
+            if [ "$response" = "200" ]; then
+              echo "Service is ready!"
+              break
+            elif [ "$response" = "curl_error" ]; then
+              echo "Curl encountered an error, possibly exit code 56. Continuing to retry..."
+            else
+              echo "Service not ready yet (HTTP status $response). Retrying in 5 seconds..."
+            fi
+            
+            sleep 5
+          done
+          echo "Finished waiting for service."
+
+      - name: Start Mock Services
+        run: |
+          cd backend/tests/integration/mock_services
+          docker compose -f docker-compose.mock-it-services.yml \
+            -p mock-it-services-stack up -d
+
+      - name: Run Integration Tests for ${{ matrix.test-dir.name }}
+        uses: nick-fields/retry@v3
+        with:
+          timeout_minutes: 20
+          max_attempts: 3
+          retry_wait_seconds: 10
+          command: |
+            echo "Running integration tests for ${{ matrix.test-dir.path }}..."
+            docker run --rm --network onyx_default \
+              --name test-runner \
+              -e POSTGRES_HOST=relational_db \
+              -e POSTGRES_USER=postgres \
+              -e POSTGRES_PASSWORD=password \
+              -e POSTGRES_DB=postgres \
+              -e DB_READONLY_USER=db_readonly_user \
+              -e DB_READONLY_PASSWORD=password \
+              -e POSTGRES_POOL_PRE_PING=true \
+              -e POSTGRES_USE_NULL_POOL=true \
+              -e VESPA_HOST=index \
+              -e REDIS_HOST=cache \
+              -e API_SERVER_HOST=api_server \
+              -e OPENAI_API_KEY=${OPENAI_API_KEY} \
+              -e SLACK_BOT_TOKEN=${SLACK_BOT_TOKEN} \
+              -e CONFLUENCE_TEST_SPACE_URL=${CONFLUENCE_TEST_SPACE_URL} \
+              -e CONFLUENCE_USER_NAME=${CONFLUENCE_USER_NAME} \
+              -e CONFLUENCE_ACCESS_TOKEN=${CONFLUENCE_ACCESS_TOKEN} \
+              -e CONFLUENCE_ACCESS_TOKEN_SCOPED=${CONFLUENCE_ACCESS_TOKEN_SCOPED} \
+              -e JIRA_BASE_URL=${JIRA_BASE_URL} \
+              -e JIRA_USER_EMAIL=${JIRA_USER_EMAIL} \
+              -e JIRA_API_TOKEN=${JIRA_API_TOKEN} \
+              -e JIRA_API_TOKEN_SCOPED=${JIRA_API_TOKEN_SCOPED} \
+              -e PERM_SYNC_SHAREPOINT_CLIENT_ID=${PERM_SYNC_SHAREPOINT_CLIENT_ID} \
+              -e PERM_SYNC_SHAREPOINT_PRIVATE_KEY="${PERM_SYNC_SHAREPOINT_PRIVATE_KEY}" \
+              -e PERM_SYNC_SHAREPOINT_CERTIFICATE_PASSWORD=${PERM_SYNC_SHAREPOINT_CERTIFICATE_PASSWORD} \
+              -e PERM_SYNC_SHAREPOINT_DIRECTORY_ID=${PERM_SYNC_SHAREPOINT_DIRECTORY_ID} \
+              -e TEST_WEB_HOSTNAME=test-runner \
+              -e MOCK_CONNECTOR_SERVER_HOST=mock_connector_server \
+              -e MOCK_CONNECTOR_SERVER_PORT=8001 \
+              onyxdotapp/onyx-integration:test \
+              /app/tests/integration/${{ matrix.test-dir.path }}
+
+      # ------------------------------------------------------------
+      # Always gather logs BEFORE "down":
+      - name: Dump API server logs
+        if: always()
+        run: |
+          cd deployment/docker_compose
+          docker compose logs --no-color api_server > $GITHUB_WORKSPACE/api_server.log || true
+
+      - name: Dump all-container logs (optional)
+        if: always()
+        run: |
+          cd deployment/docker_compose
+          docker compose logs --no-color > $GITHUB_WORKSPACE/docker-compose.log || true
+
+      - name: Upload logs
+        if: always()
+        uses: actions/upload-artifact@v4
+        with:
+          name: docker-all-logs-${{ matrix.test-dir.name }}
+          path: ${{ github.workspace }}/docker-compose.log
+      # ------------------------------------------------------------
+
+      - name: Stop Docker containers
+        if: always()
+        run: |
+          cd deployment/docker_compose
+          docker compose down -v
+
+
+  multitenant-tests:
+    needs:
+      [
+        build-backend-image,
+        build-model-server-image,
+        build-integration-image,
+      ]
+    runs-on: blacksmith-8vcpu-ubuntu-2404-arm
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Login to Private Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.PRIVATE_REGISTRY }}
+          username: ${{ env.PRIVATE_REGISTRY_USERNAME }}
+          password: ${{ env.PRIVATE_REGISTRY_PASSWORD }}
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Pull Docker images
+        run: |
+          (docker pull --platform linux/arm64 ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-backend:test-${{ github.run_id }}) &
+          (docker pull --platform linux/arm64 ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-model-server:test-${{ github.run_id }}) &
+          (docker pull --platform linux/arm64 ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-integration:test-${{ github.run_id }}) &
+          wait
+          docker tag ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-backend:test-${{ github.run_id }} onyxdotapp/onyx-backend:test
+          docker tag ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-model-server:test-${{ github.run_id }} onyxdotapp/onyx-model-server:test
+          docker tag ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-integration:test-${{ github.run_id }} onyxdotapp/onyx-integration:test
+
+      - name: Start Docker containers for multi-tenant tests
+        run: |
+          cd deployment/docker_compose
+          ENABLE_PAID_ENTERPRISE_EDITION_FEATURES=true \
+          MULTI_TENANT=true \
+          AUTH_TYPE=cloud \
+          REQUIRE_EMAIL_VERIFICATION=false \
+          DISABLE_TELEMETRY=true \
+          IMAGE_TAG=test \
+          DEV_MODE=true \
+          docker compose -f docker-compose.multitenant-dev.yml up \
+            relational_db \
+            index \
+            cache \
+            minio \
+            api_server \
+            inference_model_server \
+            indexing_model_server \
+            background \
+            -d
+        id: start_docker_multi_tenant
+
+      - name: Wait for service to be ready (multi-tenant)
+        run: |
+          echo "Starting wait-for-service script for multi-tenant..."
+          docker logs -f onyx-api_server-1 &
+          start_time=$(date +%s)
+          timeout=300
+          while true; do
+            current_time=$(date +%s)
+            elapsed_time=$((current_time - start_time))
+            if [ $elapsed_time -ge $timeout ]; then
+              echo "Timeout reached. Service did not become ready in 5 minutes."
+              exit 1
+            fi
+            response=$(curl -s -o /dev/null -w "%{http_code}" http://localhost:8080/health || echo "curl_error")
+            if [ "$response" = "200" ]; then
+              echo "Service is ready!"
+              break
+            elif [ "$response" = "curl_error" ]; then
+              echo "Curl encountered an error; retrying..."
+            else
+              echo "Service not ready yet (HTTP $response). Retrying in 5 seconds..."
+            fi
+            sleep 5
+          done
+          echo "Finished waiting for service."
+
+      - name: Run Multi-Tenant Integration Tests
+        run: |
+          echo "Running multi-tenant integration tests..."
+          docker run --rm --network onyx_default \
+            --name test-runner \
+            -e POSTGRES_HOST=relational_db \
+            -e POSTGRES_USER=postgres \
+            -e POSTGRES_PASSWORD=password \
+            -e DB_READONLY_USER=db_readonly_user \
+            -e DB_READONLY_PASSWORD=password \
+            -e POSTGRES_DB=postgres \
+            -e POSTGRES_USE_NULL_POOL=true \
+            -e VESPA_HOST=index \
+            -e REDIS_HOST=cache \
+            -e API_SERVER_HOST=api_server \
+            -e OPENAI_API_KEY=${OPENAI_API_KEY} \
+            -e SLACK_BOT_TOKEN=${SLACK_BOT_TOKEN} \
+            -e TEST_WEB_HOSTNAME=test-runner \
+            -e AUTH_TYPE=cloud \
+            -e MULTI_TENANT=true \
+            -e SKIP_RESET=true \
+            -e REQUIRE_EMAIL_VERIFICATION=false \
+            -e DISABLE_TELEMETRY=true \
+            -e IMAGE_TAG=test \
+            -e DEV_MODE=true \
+            onyxdotapp/onyx-integration:test \
+            /app/tests/integration/multitenant_tests
+
+      - name: Dump API server logs (multi-tenant)
+        if: always()
+        run: |
+          cd deployment/docker_compose
+          docker compose -f docker-compose.multitenant-dev.yml logs --no-color api_server > $GITHUB_WORKSPACE/api_server_multitenant.log || true
+
+      - name: Dump all-container logs (multi-tenant)
+        if: always()
+        run: |
+          cd deployment/docker_compose
+          docker compose -f docker-compose.multitenant-dev.yml logs --no-color > $GITHUB_WORKSPACE/docker-compose-multitenant.log || true
+
+      - name: Upload logs (multi-tenant)
+        if: always()
+        uses: actions/upload-artifact@v4
+        with:
+          name: docker-all-logs-multitenant
+          path: ${{ github.workspace }}/docker-compose-multitenant.log
+
+      - name: Stop multi-tenant Docker containers
+        if: always()
+        run: |
+          cd deployment/docker_compose
+          docker compose -f docker-compose.multitenant-dev.yml down -v
+
+  required: 
+    runs-on: blacksmith-2vcpu-ubuntu-2404-arm
+    needs: [integration-tests, multitenant-tests]
+    if: ${{ always() }}
+    steps:
+      - uses: actions/github-script@v7
+        with:
+          script: |
+            const needs = ${{ toJSON(needs) }};
+            const failed = Object.values(needs).some(n => n.result !== 'success');
+            if (failed) {
+              core.setFailed('One or more upstream jobs failed or were cancelled.');
+            } else {
+              core.notice('All required jobs succeeded.');
+            }

.github/workflows/pr-jest-tests.yml

@@ -0,0 +1,35 @@
+name: Run Jest Tests
+concurrency:
+  group: Run-Jest-Tests-${{ github.workflow }}-${{ github.head_ref || github.event.workflow_run.head_branch || github.run_id }}
+  cancel-in-progress: true
+
+on: push
+
+jobs:
+  jest-tests:
+    name: Jest Tests
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Setup node
+        uses: actions/setup-node@v4
+        with:
+          node-version: 22
+
+      - name: Install node dependencies
+        working-directory: ./web
+        run: npm ci
+
+      - name: Run Jest tests
+        working-directory: ./web
+        run: npm test -- --ci --coverage --maxWorkers=50%
+
+      - name: Upload coverage reports
+        if: always()
+        uses: actions/upload-artifact@v4
+        with:
+          name: jest-coverage-${{ github.run_id }}
+          path: ./web/coverage
+          retention-days: 7

.github/workflows/pr-labeler.yml

@@ -0,0 +1,38 @@
+name: PR Labeler
+
+on:
+  pull_request_target:
+    branches:
+      - main
+    types:
+      - opened
+      - reopened
+      - synchronize
+      - edited
+
+permissions:
+  contents: read
+  pull-requests: write
+
+jobs:
+  validate_pr_title:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check PR title for Conventional Commits
+        env:
+          PR_TITLE: ${{ github.event.pull_request.title }}
+        run: |
+          echo "PR Title: $PR_TITLE"
+          if [[ ! "$PR_TITLE" =~ ^(feat|fix|docs|test|ci|refactor|perf|chore|revert|build)(\(.+\))?:\ .+ ]]; then
+            echo "::error::❌ Your PR title does not follow the Conventional Commits format.
+              This check ensures that all pull requests use clear, consistent titles that help automate changelogs and improve project history.
+
+              Please update your PR title to follow the Conventional Commits style.  
+              Here is a link to a blog explaining the reason why we've included the Conventional Commits style into our PR titles: https://xfuture-blog.com/working-with-conventional-commits
+
+              **Here are some examples of valid PR titles:**
+              - feat: add user authentication
+              - fix(login): handle null password error
+              - docs(readme): update installation instructions"
+            exit 1
+          fi

.github/workflows/pr-linear-check.yml

@@ -0,0 +1,29 @@
+name: Ensure PR references Linear
+
+on:
+  pull_request:
+    types: [opened, edited, reopened, synchronize]
+
+jobs:
+  linear-check:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check PR body for Linear link or override
+        env:
+          PR_BODY: ${{ github.event.pull_request.body }}
+        run: |
+          # Looking for "https://linear.app" in the body
+          if echo "$PR_BODY" | grep -qE "https://linear\.app"; then
+            echo "Found a Linear link. Check passed."
+            exit 0
+          fi
+
+          # Looking for a checked override: "[x] Override Linear Check"
+          if echo "$PR_BODY" | grep -q "\[x\].*Override Linear Check"; then
+            echo "Override box is checked. Check passed."
+            exit 0
+          fi
+
+          # Otherwise, fail the run
+          echo "No Linear link or override found in the PR description."
+          exit 1

.github/workflows/pr-mit-integration-tests.yml

@@ -0,0 +1,359 @@
+name: Run MIT Integration Tests v2
+concurrency:
+  group: Run-MIT-Integration-Tests-${{ github.workflow }}-${{ github.head_ref || github.event.workflow_run.head_branch || github.run_id }}
+  cancel-in-progress: true
+
+on:
+  merge_group:
+    types: [checks_requested]
+
+env:
+  # Private Registry Configuration
+  PRIVATE_REGISTRY: experimental-registry.blacksmith.sh:5000
+  PRIVATE_REGISTRY_USERNAME: ${{ secrets.PRIVATE_REGISTRY_USERNAME }}
+  PRIVATE_REGISTRY_PASSWORD: ${{ secrets.PRIVATE_REGISTRY_PASSWORD }}
+
+  # Test Environment Variables
+  OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
+  SLACK_BOT_TOKEN: ${{ secrets.SLACK_BOT_TOKEN }}
+  CONFLUENCE_TEST_SPACE_URL: ${{ vars.CONFLUENCE_TEST_SPACE_URL }}
+  CONFLUENCE_USER_NAME: ${{ vars.CONFLUENCE_USER_NAME }}
+  CONFLUENCE_ACCESS_TOKEN: ${{ secrets.CONFLUENCE_ACCESS_TOKEN }}
+  CONFLUENCE_ACCESS_TOKEN_SCOPED: ${{ secrets.CONFLUENCE_ACCESS_TOKEN_SCOPED }}
+  JIRA_BASE_URL: ${{ secrets.JIRA_BASE_URL }}
+  JIRA_USER_EMAIL: ${{ secrets.JIRA_USER_EMAIL }}
+  JIRA_API_TOKEN: ${{ secrets.JIRA_API_TOKEN }}
+  JIRA_API_TOKEN_SCOPED: ${{ secrets.JIRA_API_TOKEN_SCOPED }}
+  PERM_SYNC_SHAREPOINT_CLIENT_ID: ${{ secrets.PERM_SYNC_SHAREPOINT_CLIENT_ID }}
+  PERM_SYNC_SHAREPOINT_PRIVATE_KEY: ${{ secrets.PERM_SYNC_SHAREPOINT_PRIVATE_KEY }}
+  PERM_SYNC_SHAREPOINT_CERTIFICATE_PASSWORD: ${{ secrets.PERM_SYNC_SHAREPOINT_CERTIFICATE_PASSWORD }}
+  PERM_SYNC_SHAREPOINT_DIRECTORY_ID: ${{ secrets.PERM_SYNC_SHAREPOINT_DIRECTORY_ID }}
+
+jobs:
+  discover-test-dirs:
+    runs-on: blacksmith-2vcpu-ubuntu-2404-arm
+    outputs:
+      test-dirs: ${{ steps.set-matrix.outputs.test-dirs }}
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Discover test directories
+        id: set-matrix
+        run: |
+          # Find all leaf-level directories in both test directories
+          tests_dirs=$(find backend/tests/integration/tests -mindepth 1 -maxdepth 1 -type d ! -name "__pycache__" -exec basename {} \; | sort)
+          connector_dirs=$(find backend/tests/integration/connector_job_tests -mindepth 1 -maxdepth 1 -type d ! -name "__pycache__" -exec basename {} \; | sort)
+
+          # Create JSON array with directory info
+          all_dirs=""
+          for dir in $tests_dirs; do
+            all_dirs="$all_dirs{\"path\":\"tests/$dir\",\"name\":\"tests-$dir\"},"
+          done
+          for dir in $connector_dirs; do
+            all_dirs="$all_dirs{\"path\":\"connector_job_tests/$dir\",\"name\":\"connector-$dir\"},"
+          done
+
+          # Remove trailing comma and wrap in array
+          all_dirs="[${all_dirs%,}]"
+          echo "test-dirs=$all_dirs" >> $GITHUB_OUTPUT
+
+  prepare-build:
+    runs-on: blacksmith-2vcpu-ubuntu-2404-arm
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Prepare build
+        uses: ./.github/actions/prepare-build
+
+  build-backend-image:
+    runs-on: blacksmith-16vcpu-ubuntu-2404-arm
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Login to Private Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.PRIVATE_REGISTRY }}
+          username: ${{ env.PRIVATE_REGISTRY_USERNAME }}
+          password: ${{ env.PRIVATE_REGISTRY_PASSWORD }}
+
+      - name: Set up Docker Buildx
+        uses: useblacksmith/setup-docker-builder@v1
+
+      - name: Build and push Backend Docker image
+        uses: useblacksmith/build-push-action@v2
+        with:
+          context: ./backend
+          file: ./backend/Dockerfile
+          platforms: linux/arm64
+          tags: ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-backend:test-${{ github.run_id }}
+          push: true
+          outputs: type=registry
+          no-cache: true
+
+
+  build-model-server-image:
+    runs-on: blacksmith-16vcpu-ubuntu-2404-arm
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Login to Private Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.PRIVATE_REGISTRY }}
+          username: ${{ env.PRIVATE_REGISTRY_USERNAME }}
+          password: ${{ env.PRIVATE_REGISTRY_PASSWORD }}
+
+      - name: Set up Docker Buildx
+        uses: useblacksmith/setup-docker-builder@v1
+
+      - name: Build and push Model Server Docker image
+        uses: useblacksmith/build-push-action@v2
+        with:
+          context: ./backend
+          file: ./backend/Dockerfile.model_server
+          platforms: linux/arm64
+          tags: ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-model-server:test-${{ github.run_id }}
+          push: true
+          outputs: type=registry
+          provenance: false
+          no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
+
+
+  build-integration-image:
+    needs: prepare-build
+    runs-on: blacksmith-16vcpu-ubuntu-2404-arm
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Login to Private Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.PRIVATE_REGISTRY }}
+          username: ${{ env.PRIVATE_REGISTRY_USERNAME }}
+          password: ${{ env.PRIVATE_REGISTRY_PASSWORD }}
+
+      - name: Download OpenAPI artifacts
+        uses: actions/download-artifact@v4
+        with:
+          name: openapi-artifacts
+          path: backend/generated/
+
+      - name: Set up Docker Buildx
+        uses: useblacksmith/setup-docker-builder@v1
+
+      - name: Build and push integration test image with Docker Bake
+        env:
+          REGISTRY: ${{ env.PRIVATE_REGISTRY }}
+          TAG: test-${{ github.run_id }}
+        run: cd backend && docker buildx bake --no-cache --push integration
+
+  integration-tests-mit:
+    needs:
+      [
+        discover-test-dirs,
+        build-backend-image,
+        build-model-server-image,
+        build-integration-image,
+      ]
+    # See https://docs.blacksmith.sh/blacksmith-runners/overview
+    runs-on: blacksmith-8vcpu-ubuntu-2404-arm
+
+    strategy:
+      fail-fast: false
+      matrix:
+        test-dir: ${{ fromJson(needs.discover-test-dirs.outputs.test-dirs) }}
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Login to Private Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.PRIVATE_REGISTRY }}
+          username: ${{ env.PRIVATE_REGISTRY_USERNAME }}
+          password: ${{ env.PRIVATE_REGISTRY_PASSWORD }}
+
+      # needed for pulling Vespa, Redis, Postgres, and Minio images
+      # otherwise, we hit the "Unauthenticated users" limit
+      # https://docs.docker.com/docker-hub/usage/
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Pull Docker images
+        run: |
+          # Pull all images from registry in parallel
+          echo "Pulling Docker images in parallel..."
+          # Pull images from private registry
+          (docker pull --platform linux/arm64 ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-backend:test-${{ github.run_id }}) &
+          (docker pull --platform linux/arm64 ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-model-server:test-${{ github.run_id }}) &
+          (docker pull --platform linux/arm64 ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-integration:test-${{ github.run_id }}) &
+
+          # Wait for all background jobs to complete
+          wait
+          echo "All Docker images pulled successfully"
+
+          # Re-tag to remove registry prefix for docker-compose
+          docker tag ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-backend:test-${{ github.run_id }} onyxdotapp/onyx-backend:test
+          docker tag ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-model-server:test-${{ github.run_id }} onyxdotapp/onyx-model-server:test
+          docker tag ${{ env.PRIVATE_REGISTRY }}/integration-test-onyx-integration:test-${{ github.run_id }} onyxdotapp/onyx-integration:test
+
+      # NOTE: Use pre-ping/null pool to reduce flakiness due to dropped connections
+      # NOTE: don't need web server for integration tests
+      - name: Start Docker containers
+        run: |
+          cd deployment/docker_compose
+          AUTH_TYPE=basic \
+          POSTGRES_POOL_PRE_PING=true \
+          POSTGRES_USE_NULL_POOL=true \
+          REQUIRE_EMAIL_VERIFICATION=false \
+          DISABLE_TELEMETRY=true \
+          IMAGE_TAG=test \
+          INTEGRATION_TESTS_MODE=true \
+          docker compose -f docker-compose.yml -f docker-compose.dev.yml up \
+            relational_db \
+            index \
+            cache \
+            minio \
+            api_server \
+            inference_model_server \
+            indexing_model_server \
+            background \
+            -d
+        id: start_docker
+
+      - name: Wait for service to be ready
+        run: |
+          echo "Starting wait-for-service script..."
+
+          docker logs -f onyx-api_server-1 &
+
+          start_time=$(date +%s)
+          timeout=300  # 5 minutes in seconds
+
+          while true; do
+            current_time=$(date +%s)
+            elapsed_time=$((current_time - start_time))
+            
+            if [ $elapsed_time -ge $timeout ]; then
+              echo "Timeout reached. Service did not become ready in 5 minutes."
+              exit 1
+            fi
+            
+            # Use curl with error handling to ignore specific exit code 56
+            response=$(curl -s -o /dev/null -w "%{http_code}" http://localhost:8080/health || echo "curl_error")
+            
+            if [ "$response" = "200" ]; then
+              echo "Service is ready!"
+              break
+            elif [ "$response" = "curl_error" ]; then
+              echo "Curl encountered an error, possibly exit code 56. Continuing to retry..."
+            else
+              echo "Service not ready yet (HTTP status $response). Retrying in 5 seconds..."
+            fi
+            
+            sleep 5
+          done
+          echo "Finished waiting for service."
+
+      - name: Start Mock Services
+        run: |
+          cd backend/tests/integration/mock_services
+          docker compose -f docker-compose.mock-it-services.yml \
+            -p mock-it-services-stack up -d
+
+      # NOTE: Use pre-ping/null to reduce flakiness due to dropped connections
+      - name: Run Integration Tests for ${{ matrix.test-dir.name }}
+        uses: nick-fields/retry@v3
+        with:
+          timeout_minutes: 20
+          max_attempts: 3
+          retry_wait_seconds: 10
+          command: |
+            echo "Running integration tests for ${{ matrix.test-dir.path }}..."
+            docker run --rm --network onyx_default \
+              --name test-runner \
+              -e POSTGRES_HOST=relational_db \
+              -e POSTGRES_USER=postgres \
+              -e POSTGRES_PASSWORD=password \
+              -e POSTGRES_DB=postgres \
+              -e DB_READONLY_USER=db_readonly_user \
+              -e DB_READONLY_PASSWORD=password \
+              -e POSTGRES_POOL_PRE_PING=true \
+              -e POSTGRES_USE_NULL_POOL=true \
+              -e VESPA_HOST=index \
+              -e REDIS_HOST=cache \
+              -e API_SERVER_HOST=api_server \
+              -e OPENAI_API_KEY=${OPENAI_API_KEY} \
+              -e SLACK_BOT_TOKEN=${SLACK_BOT_TOKEN} \
+              -e CONFLUENCE_TEST_SPACE_URL=${CONFLUENCE_TEST_SPACE_URL} \
+              -e CONFLUENCE_USER_NAME=${CONFLUENCE_USER_NAME} \
+              -e CONFLUENCE_ACCESS_TOKEN=${CONFLUENCE_ACCESS_TOKEN} \
+              -e CONFLUENCE_ACCESS_TOKEN_SCOPED=${CONFLUENCE_ACCESS_TOKEN_SCOPED} \
+              -e JIRA_BASE_URL=${JIRA_BASE_URL} \
+              -e JIRA_USER_EMAIL=${JIRA_USER_EMAIL} \
+              -e JIRA_API_TOKEN=${JIRA_API_TOKEN} \
+              -e JIRA_API_TOKEN_SCOPED=${JIRA_API_TOKEN_SCOPED} \
+              -e PERM_SYNC_SHAREPOINT_CLIENT_ID=${PERM_SYNC_SHAREPOINT_CLIENT_ID} \
+              -e PERM_SYNC_SHAREPOINT_PRIVATE_KEY="${PERM_SYNC_SHAREPOINT_PRIVATE_KEY}" \
+              -e PERM_SYNC_SHAREPOINT_CERTIFICATE_PASSWORD=${PERM_SYNC_SHAREPOINT_CERTIFICATE_PASSWORD} \
+              -e PERM_SYNC_SHAREPOINT_DIRECTORY_ID=${PERM_SYNC_SHAREPOINT_DIRECTORY_ID} \
+              -e TEST_WEB_HOSTNAME=test-runner \
+              -e MOCK_CONNECTOR_SERVER_HOST=mock_connector_server \
+              -e MOCK_CONNECTOR_SERVER_PORT=8001 \
+              onyxdotapp/onyx-integration:test \
+              /app/tests/integration/${{ matrix.test-dir.path }}
+
+      # ------------------------------------------------------------
+      # Always gather logs BEFORE "down":
+      - name: Dump API server logs
+        if: always()
+        run: |
+          cd deployment/docker_compose
+          docker compose logs --no-color api_server > $GITHUB_WORKSPACE/api_server.log || true
+
+      - name: Dump all-container logs (optional)
+        if: always()
+        run: |
+          cd deployment/docker_compose
+          docker compose logs --no-color > $GITHUB_WORKSPACE/docker-compose.log || true
+
+      - name: Upload logs
+        if: always()
+        uses: actions/upload-artifact@v4
+        with:
+          name: docker-all-logs-${{ matrix.test-dir.name }}
+          path: ${{ github.workspace }}/docker-compose.log
+      # ------------------------------------------------------------
+
+      - name: Stop Docker containers
+        if: always()
+        run: |
+          cd deployment/docker_compose
+          docker compose down -v
+
+  
+  required: 
+    runs-on: blacksmith-2vcpu-ubuntu-2404-arm
+    needs: [integration-tests-mit]
+    if: ${{ always() }}
+    steps:
+      - uses: actions/github-script@v7
+        with:
+          script: |
+            const needs = ${{ toJSON(needs) }};
+            const failed = Object.values(needs).some(n => n.result !== 'success');
+            if (failed) {
+              core.setFailed('One or more upstream jobs failed or were cancelled.');
+            } else {
+              core.notice('All required jobs succeeded.');
+            }

.github/workflows/pr-playwright-tests.yml

@@ -0,0 +1,318 @@
+name: Run Playwright Tests
+concurrency:
+  group: Run-Playwright-Tests-${{ github.workflow }}-${{ github.head_ref || github.event.workflow_run.head_branch || github.run_id }}
+  cancel-in-progress: true
+
+on: push
+
+env:
+  # AWS ECR Configuration
+  AWS_REGION: ${{ secrets.AWS_REGION || 'us-west-2' }}
+  ECR_REGISTRY: ${{ secrets.ECR_REGISTRY }}
+  AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID_ECR }}
+  AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY_ECR }}
+  BUILDX_NO_DEFAULT_ATTESTATIONS: 1
+
+  # Test Environment Variables
+  OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
+  SLACK_BOT_TOKEN: ${{ secrets.SLACK_BOT_TOKEN }}
+  GEN_AI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
+  EXA_API_KEY: ${{ secrets.EXA_API_KEY }}
+
+  # for federated slack tests
+  SLACK_CLIENT_ID: ${{ secrets.SLACK_CLIENT_ID }}
+  SLACK_CLIENT_SECRET: ${{ secrets.SLACK_CLIENT_SECRET }}
+
+  MOCK_LLM_RESPONSE: true
+
+jobs:
+  build-web-image:
+    runs-on: blacksmith-8vcpu-ubuntu-2404-arm
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Configure AWS credentials
+        uses: aws-actions/configure-aws-credentials@v4
+        with:
+          aws-access-key-id: ${{ env.AWS_ACCESS_KEY_ID }}
+          aws-secret-access-key: ${{ env.AWS_SECRET_ACCESS_KEY }}
+          aws-region: ${{ env.AWS_REGION }}
+
+      - name: Login to Amazon ECR
+        id: login-ecr
+        uses: aws-actions/amazon-ecr-login@v2
+
+      - name: Set up Docker Buildx
+        uses: useblacksmith/setup-docker-builder@v1
+
+      - name: Build and push Web Docker image
+        uses: useblacksmith/build-push-action@v2
+        with:
+          context: ./web
+          file: ./web/Dockerfile
+          platforms: linux/arm64
+          tags: ${{ env.ECR_REGISTRY }}/integration-test-onyx-web-server:playwright-test-${{ github.run_id }}
+          provenance: false
+          sbom: false
+          push: true
+          outputs: type=registry
+          no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
+
+  build-backend-image:
+    runs-on: blacksmith-8vcpu-ubuntu-2404-arm
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Configure AWS credentials
+        uses: aws-actions/configure-aws-credentials@v4
+        with:
+          aws-access-key-id: ${{ env.AWS_ACCESS_KEY_ID }}
+          aws-secret-access-key: ${{ env.AWS_SECRET_ACCESS_KEY }}
+          aws-region: ${{ env.AWS_REGION }}
+
+      - name: Login to Amazon ECR
+        id: login-ecr
+        uses: aws-actions/amazon-ecr-login@v2
+
+      - name: Set up Docker Buildx
+        uses: useblacksmith/setup-docker-builder@v1
+
+      - name: Build and push Backend Docker image
+        uses: useblacksmith/build-push-action@v2
+        with:
+          context: ./backend
+          file: ./backend/Dockerfile
+          platforms: linux/arm64
+          tags: ${{ env.ECR_REGISTRY }}/integration-test-onyx-backend:playwright-test-${{ github.run_id }}
+          provenance: false
+          sbom: false
+          push: true
+          outputs: type=registry
+          no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
+
+  build-model-server-image:
+    runs-on: blacksmith-8vcpu-ubuntu-2404-arm
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Configure AWS credentials
+        uses: aws-actions/configure-aws-credentials@v4
+        with:
+          aws-access-key-id: ${{ env.AWS_ACCESS_KEY_ID }}
+          aws-secret-access-key: ${{ env.AWS_SECRET_ACCESS_KEY }}
+          aws-region: ${{ env.AWS_REGION }}
+
+      - name: Login to Amazon ECR
+        id: login-ecr
+        uses: aws-actions/amazon-ecr-login@v2
+
+      - name: Set up Docker Buildx
+        uses: useblacksmith/setup-docker-builder@v1
+
+      - name: Build and push Model Server Docker image
+        uses: useblacksmith/build-push-action@v2
+        with:
+          context: ./backend
+          file: ./backend/Dockerfile.model_server
+          platforms: linux/arm64
+          tags: ${{ env.ECR_REGISTRY }}/integration-test-onyx-model-server:playwright-test-${{ github.run_id }}
+          provenance: false
+          sbom: false
+          push: true
+          outputs: type=registry
+          no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
+
+  playwright-tests:
+    needs: [build-web-image, build-backend-image, build-model-server-image]
+    name: Playwright Tests
+    runs-on: blacksmith-8vcpu-ubuntu-2404-arm
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Configure AWS credentials
+        uses: aws-actions/configure-aws-credentials@v4
+        with:
+          aws-access-key-id: ${{ env.AWS_ACCESS_KEY_ID }}
+          aws-secret-access-key: ${{ env.AWS_SECRET_ACCESS_KEY }}
+          aws-region: ${{ env.AWS_REGION }}
+
+      - name: Login to Amazon ECR
+        id: login-ecr
+        uses: aws-actions/amazon-ecr-login@v2
+
+      # needed for pulling Vespa, Redis, Postgres, and Minio images
+      # otherwise, we hit the "Unauthenticated users" limit
+      # https://docs.docker.com/docker-hub/usage/
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Pull Docker images
+        run: |
+          # Pull all images from ECR in parallel
+          echo "Pulling Docker images in parallel..."
+          (docker pull ${{ env.ECR_REGISTRY }}/integration-test-onyx-web-server:playwright-test-${{ github.run_id }}) &
+          (docker pull ${{ env.ECR_REGISTRY }}/integration-test-onyx-backend:playwright-test-${{ github.run_id }}) &
+          (docker pull ${{ env.ECR_REGISTRY }}/integration-test-onyx-model-server:playwright-test-${{ github.run_id }}) &
+
+          # Wait for all background jobs to complete
+          wait
+          echo "All Docker images pulled successfully"
+
+          # Re-tag with expected names for docker-compose
+          docker tag ${{ env.ECR_REGISTRY }}/integration-test-onyx-web-server:playwright-test-${{ github.run_id }} onyxdotapp/onyx-web-server:test
+          docker tag ${{ env.ECR_REGISTRY }}/integration-test-onyx-backend:playwright-test-${{ github.run_id }} onyxdotapp/onyx-backend:test
+          docker tag ${{ env.ECR_REGISTRY }}/integration-test-onyx-model-server:playwright-test-${{ github.run_id }} onyxdotapp/onyx-model-server:test
+
+      - name: Setup node
+        uses: actions/setup-node@v4
+        with:
+          node-version: 22
+
+      - name: Install node dependencies
+        working-directory: ./web
+        run: npm ci
+
+      - name: Install playwright browsers
+        working-directory: ./web
+        run: npx playwright install --with-deps
+
+      - name: Create .env file for Docker Compose
+        run: |
+          cat <<EOF > deployment/docker_compose/.env
+          ENABLE_PAID_ENTERPRISE_EDITION_FEATURES=true
+          AUTH_TYPE=basic
+          GEN_AI_API_KEY=${{ env.OPENAI_API_KEY }}
+          EXA_API_KEY=${{ env.EXA_API_KEY }}
+          REQUIRE_EMAIL_VERIFICATION=false
+          DISABLE_TELEMETRY=true
+          IMAGE_TAG=test
+          EOF
+
+      - name: Start Docker containers
+        run: |
+          cd deployment/docker_compose
+          docker compose -f docker-compose.yml -f docker-compose.dev.yml up -d
+        id: start_docker
+
+      - name: Wait for service to be ready
+        run: |
+          echo "Starting wait-for-service script..."
+
+          docker logs -f onyx-api_server-1 &
+
+          start_time=$(date +%s)
+          timeout=300  # 5 minutes in seconds
+
+          while true; do
+            current_time=$(date +%s)
+            elapsed_time=$((current_time - start_time))
+
+            if [ $elapsed_time -ge $timeout ]; then
+              echo "Timeout reached. Service did not become ready in 5 minutes."
+              exit 1
+            fi
+
+            # Use curl with error handling to ignore specific exit code 56
+            response=$(curl -s -o /dev/null -w "%{http_code}" http://localhost:8080/health || echo "curl_error")
+
+            if [ "$response" = "200" ]; then
+              echo "Service is ready!"
+              break
+            elif [ "$response" = "curl_error" ]; then
+              echo "Curl encountered an error, possibly exit code 56. Continuing to retry..."
+            else
+              echo "Service not ready yet (HTTP status $response). Retrying in 5 seconds..."
+            fi
+
+            sleep 5
+          done
+          echo "Finished waiting for service."
+
+      - name: Run Playwright tests
+        working-directory: ./web
+        run: |
+          # Create test-results directory to ensure it exists for artifact upload
+          mkdir -p test-results
+          npx playwright test
+
+      - uses: actions/upload-artifact@v4
+        if: always()
+        with:
+          # Includes test results and trace.zip files
+          name: playwright-test-results-${{ github.run_id }}
+          path: ./web/test-results/
+          retention-days: 30
+
+      # save before stopping the containers so the logs can be captured
+      - name: Save Docker logs
+        if: success() || failure()
+        run: |
+          cd deployment/docker_compose
+          docker compose logs > docker-compose.log
+          mv docker-compose.log ${{ github.workspace }}/docker-compose.log
+
+      - name: Upload logs
+        if: success() || failure()
+        uses: actions/upload-artifact@v4
+        with:
+          name: docker-logs
+          path: ${{ github.workspace }}/docker-compose.log
+
+      - name: Stop Docker containers
+        run: |
+          cd deployment/docker_compose
+          docker compose down -v
+
+# NOTE: Chromatic UI diff testing is currently disabled.
+# We are using Playwright for local and CI testing without visual regression checks.
+# Chromatic may be reintroduced in the future for UI diff testing if needed.
+
+# chromatic-tests:
+#   name: Chromatic Tests
+
+#   needs: playwright-tests
+#   runs-on:
+#     [
+#       runs-on,
+#       runner=32cpu-linux-x64,
+#       disk=large,
+#       "run-id=${{ github.run_id }}",
+#     ]
+#   steps:
+#     - name: Checkout code
+#       uses: actions/checkout@v4
+#       with:
+#         fetch-depth: 0
+
+#     - name: Setup node
+#       uses: actions/setup-node@v4
+#       with:
+#         node-version: 22
+
+#     - name: Install node dependencies
+#       working-directory: ./web
+#       run: npm ci
+
+#     - name: Download Playwright test results
+#       uses: actions/download-artifact@v4
+#       with:
+#         name: test-results
+#         path: ./web/test-results
+
+#     - name: Run Chromatic
+#       uses: chromaui/action@latest
+#       with:
+#         playwright: true
+#         projectToken: ${{ secrets.CHROMATIC_PROJECT_TOKEN }}
+#         workingDir: ./web
+#       env:
+#         CHROMATIC_ARCHIVE_LOCATION: ./test-results

.github/workflows/pr-python-checks.yml

@@ -0,0 +1,67 @@
+name: Python Checks
+
+on:
+  merge_group:
+  pull_request:
+    branches:
+      - main
+      - 'release/**'
+
+jobs:
+  mypy-check:
+    # See https://runs-on.com/runners/linux/
+    runs-on: [runs-on,runner=8cpu-linux-x64,"run-id=${{ github.run_id }}"]
+
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: '3.11'
+        cache: 'pip'
+        cache-dependency-path: |
+          backend/requirements/default.txt
+          backend/requirements/dev.txt
+          backend/requirements/model_server.txt
+    - run: |
+        python -m pip install --upgrade pip
+        pip install --retries 5 --timeout 30 -r backend/requirements/default.txt
+        pip install --retries 5 --timeout 30 -r backend/requirements/dev.txt
+        pip install --retries 5 --timeout 30 -r backend/requirements/model_server.txt
+
+    - name: Generate OpenAPI schema
+      working-directory: ./backend
+      env:
+        PYTHONPATH: "."
+      run: |
+        python scripts/onyx_openapi_schema.py --filename generated/openapi.json
+
+    - name: Generate OpenAPI Python client
+      working-directory: ./backend
+      run: |
+        docker run --rm \
+          -v "${{ github.workspace }}/backend/generated:/local" \
+          openapitools/openapi-generator-cli generate \
+          -i /local/openapi.json \
+          -g python \
+          -o /local/onyx_openapi_client \
+          --package-name onyx_openapi_client \
+          --skip-validate-spec \
+          --openapi-normalizer "SIMPLIFY_ONEOF_ANYOF=true,SET_OAS3_NULLABLE=true"
+            
+    - name: Run MyPy
+      run: |
+        cd backend
+        mypy .
+
+    - name: Check import order with reorder-python-imports
+      run: |
+        cd backend
+        find ./onyx -name "*.py" | xargs reorder-python-imports --py311-plus
+
+    - name: Check code formatting with Black
+      run: |
+        cd backend
+        black --check .

.github/workflows/pr-python-connector-tests.yml

@@ -0,0 +1,227 @@
+name: Connector Tests
+
+on:
+  merge_group:
+  pull_request:
+    branches: [main]
+  schedule:
+    # This cron expression runs the job daily at 16:00 UTC (9am PT)
+    - cron: "0 16 * * *"
+
+env:
+  # AWS
+  AWS_ACCESS_KEY_ID_DAILY_CONNECTOR_TESTS: ${{ secrets.AWS_ACCESS_KEY_ID_DAILY_CONNECTOR_TESTS }}
+  AWS_SECRET_ACCESS_KEY_DAILY_CONNECTOR_TESTS: ${{ secrets.AWS_SECRET_ACCESS_KEY_DAILY_CONNECTOR_TESTS }}
+
+  # Cloudflare R2
+  R2_ACCOUNT_ID_DAILY_CONNECTOR_TESTS: ${{ vars.R2_ACCOUNT_ID_DAILY_CONNECTOR_TESTS }}
+  R2_ACCESS_KEY_ID_DAILY_CONNECTOR_TESTS: ${{ secrets.R2_ACCESS_KEY_ID_DAILY_CONNECTOR_TESTS }}
+  R2_SECRET_ACCESS_KEY_DAILY_CONNECTOR_TESTS: ${{ secrets.R2_SECRET_ACCESS_KEY_DAILY_CONNECTOR_TESTS }}
+
+  # Google Cloud Storage
+  GCS_ACCESS_KEY_ID_DAILY_CONNECTOR_TESTS: ${{ secrets.GCS_ACCESS_KEY_ID_DAILY_CONNECTOR_TESTS }}
+  GCS_SECRET_ACCESS_KEY_DAILY_CONNECTOR_TESTS: ${{ secrets.GCS_SECRET_ACCESS_KEY_DAILY_CONNECTOR_TESTS }}
+
+  # Confluence
+  CONFLUENCE_TEST_SPACE_URL: ${{ vars.CONFLUENCE_TEST_SPACE_URL }}
+  CONFLUENCE_TEST_SPACE: ${{ vars.CONFLUENCE_TEST_SPACE }}
+  CONFLUENCE_TEST_PAGE_ID: ${{ secrets.CONFLUENCE_TEST_PAGE_ID }}
+  CONFLUENCE_USER_NAME: ${{ vars.CONFLUENCE_USER_NAME }}
+  CONFLUENCE_ACCESS_TOKEN: ${{ secrets.CONFLUENCE_ACCESS_TOKEN }}
+  CONFLUENCE_ACCESS_TOKEN_SCOPED: ${{ secrets.CONFLUENCE_ACCESS_TOKEN_SCOPED }}
+
+  # Jira
+  JIRA_BASE_URL: ${{ secrets.JIRA_BASE_URL }}
+  JIRA_USER_EMAIL: ${{ secrets.JIRA_USER_EMAIL }}
+  JIRA_API_TOKEN: ${{ secrets.JIRA_API_TOKEN }}
+  JIRA_API_TOKEN_SCOPED: ${{ secrets.JIRA_API_TOKEN_SCOPED }}
+
+  # Gong
+  GONG_ACCESS_KEY: ${{ secrets.GONG_ACCESS_KEY }}
+  GONG_ACCESS_KEY_SECRET: ${{ secrets.GONG_ACCESS_KEY_SECRET }}
+
+  # Google
+  GOOGLE_DRIVE_SERVICE_ACCOUNT_JSON_STR: ${{ secrets.GOOGLE_DRIVE_SERVICE_ACCOUNT_JSON_STR }}
+  GOOGLE_DRIVE_OAUTH_CREDENTIALS_JSON_STR_TEST_USER_1: ${{ secrets.GOOGLE_DRIVE_OAUTH_CREDENTIALS_JSON_STR_TEST_USER_1 }}
+  GOOGLE_DRIVE_OAUTH_CREDENTIALS_JSON_STR: ${{ secrets.GOOGLE_DRIVE_OAUTH_CREDENTIALS_JSON_STR }}
+  GOOGLE_GMAIL_SERVICE_ACCOUNT_JSON_STR: ${{ secrets.GOOGLE_GMAIL_SERVICE_ACCOUNT_JSON_STR }}
+  GOOGLE_GMAIL_OAUTH_CREDENTIALS_JSON_STR: ${{ secrets.GOOGLE_GMAIL_OAUTH_CREDENTIALS_JSON_STR }}
+
+  # Slab
+  SLAB_BOT_TOKEN: ${{ secrets.SLAB_BOT_TOKEN }}
+
+  # Zendesk
+  ZENDESK_SUBDOMAIN: ${{ secrets.ZENDESK_SUBDOMAIN }}
+  ZENDESK_EMAIL: ${{ secrets.ZENDESK_EMAIL }}
+  ZENDESK_TOKEN: ${{ secrets.ZENDESK_TOKEN }}
+
+  # Salesforce
+  SF_USERNAME: ${{ secrets.SF_USERNAME }}
+  SF_PASSWORD: ${{ secrets.SF_PASSWORD }}
+  SF_SECURITY_TOKEN: ${{ secrets.SF_SECURITY_TOKEN }}
+
+  # Hubspot
+  HUBSPOT_ACCESS_TOKEN: ${{ secrets.HUBSPOT_ACCESS_TOKEN }}
+
+  # IMAP
+  IMAP_HOST: ${{ vars.IMAP_HOST }}
+  IMAP_USERNAME: ${{ vars.IMAP_USERNAME }}
+  IMAP_PASSWORD: ${{ secrets.IMAP_PASSWORD }}
+  IMAP_MAILBOXES: ${{ vars.IMAP_MAILBOXES }}
+
+  # Airtable
+  AIRTABLE_TEST_BASE_ID: ${{ vars.AIRTABLE_TEST_BASE_ID }}
+  AIRTABLE_TEST_TABLE_ID: ${{ vars.AIRTABLE_TEST_TABLE_ID }}
+  AIRTABLE_TEST_TABLE_NAME: ${{ vars.AIRTABLE_TEST_TABLE_NAME }}
+  AIRTABLE_ACCESS_TOKEN: ${{ secrets.AIRTABLE_ACCESS_TOKEN }}
+
+  # Sharepoint
+  SHAREPOINT_CLIENT_ID: ${{ vars.SHAREPOINT_CLIENT_ID }}
+  SHAREPOINT_CLIENT_SECRET: ${{ secrets.SHAREPOINT_CLIENT_SECRET }}
+  SHAREPOINT_CLIENT_DIRECTORY_ID: ${{ vars.SHAREPOINT_CLIENT_DIRECTORY_ID }}
+  SHAREPOINT_SITE: ${{ vars.SHAREPOINT_SITE }}
+
+  # Github
+  ACCESS_TOKEN_GITHUB: ${{ secrets.ACCESS_TOKEN_GITHUB }}
+
+  # Gitlab
+  GITLAB_ACCESS_TOKEN: ${{ secrets.GITLAB_ACCESS_TOKEN }}
+
+  # Gitbook
+  GITBOOK_SPACE_ID: ${{ secrets.GITBOOK_SPACE_ID }}
+  GITBOOK_API_KEY: ${{ secrets.GITBOOK_API_KEY }}
+
+  # Notion
+  NOTION_INTEGRATION_TOKEN: ${{ secrets.NOTION_INTEGRATION_TOKEN }}
+
+  # Highspot
+  HIGHSPOT_KEY: ${{ secrets.HIGHSPOT_KEY }}
+  HIGHSPOT_SECRET: ${{ secrets.HIGHSPOT_SECRET }}
+
+  # Slack
+  SLACK_BOT_TOKEN: ${{ secrets.SLACK_BOT_TOKEN }}
+
+  # Teams
+  TEAMS_APPLICATION_ID: ${{ secrets.TEAMS_APPLICATION_ID }}
+  TEAMS_DIRECTORY_ID: ${{ secrets.TEAMS_DIRECTORY_ID }}
+  TEAMS_SECRET: ${{ secrets.TEAMS_SECRET }}
+
+  # Bitbucket
+  BITBUCKET_WORKSPACE: ${{ secrets.BITBUCKET_WORKSPACE }}
+  BITBUCKET_REPOSITORIES: ${{ secrets.BITBUCKET_REPOSITORIES }}
+  BITBUCKET_PROJECTS: ${{ secrets.BITBUCKET_PROJECTS }}
+  BITBUCKET_EMAIL: ${{ vars.BITBUCKET_EMAIL }}
+  BITBUCKET_API_TOKEN: ${{ secrets.BITBUCKET_API_TOKEN }}
+
+  # Fireflies
+  FIREFLIES_API_KEY: ${{ secrets.FIREFLIES_API_KEY }}
+
+jobs:
+  connectors-check:
+    # See https://runs-on.com/runners/linux/
+    runs-on: [runs-on, runner=8cpu-linux-x64, "run-id=${{ github.run_id }}"]
+
+    env:
+      PYTHONPATH: ./backend
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+          cache: "pip"
+          cache-dependency-path: |
+            backend/requirements/default.txt
+            backend/requirements/dev.txt
+
+      - name: Install Dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install --retries 5 --timeout 30 -r backend/requirements/default.txt
+          pip install --retries 5 --timeout 30 -r backend/requirements/dev.txt
+          playwright install chromium
+          playwright install-deps chromium
+
+      - name: Detect Connector changes
+        id: changes
+        uses: dorny/paths-filter@v3
+        with:
+          filters: |
+            hubspot:
+              - 'backend/onyx/connectors/hubspot/**'
+              - 'backend/tests/daily/connectors/hubspot/**'
+            salesforce:
+              - 'backend/onyx/connectors/salesforce/**'
+              - 'backend/tests/daily/connectors/salesforce/**'
+            github:
+              - 'backend/onyx/connectors/github/**'
+              - 'backend/tests/daily/connectors/github/**'
+            file_processing:
+              - 'backend/onyx/file_processing/**'
+
+      - name: Run Tests (excluding HubSpot, Salesforce, and GitHub)
+        shell: script -q -e -c "bash --noprofile --norc -eo pipefail {0}"
+        run: |
+          py.test \
+            -n 8 \
+            --dist loadfile \
+            --durations=8 \
+            -o junit_family=xunit2 \
+            -xv \
+            --ff \
+            backend/tests/daily/connectors \
+            --ignore backend/tests/daily/connectors/hubspot \
+            --ignore backend/tests/daily/connectors/salesforce \
+            --ignore backend/tests/daily/connectors/github
+
+      - name: Run HubSpot Connector Tests
+        if: ${{ github.event_name == 'schedule' || steps.changes.outputs.hubspot == 'true' || steps.changes.outputs.file_processing == 'true' }}
+        shell: script -q -e -c "bash --noprofile --norc -eo pipefail {0}"
+        run: |
+          py.test \
+            -n 8 \
+            --dist loadfile \
+            --durations=8 \
+            -o junit_family=xunit2 \
+            -xv \
+            --ff \
+            backend/tests/daily/connectors/hubspot
+
+      - name: Run Salesforce Connector Tests
+        if: ${{ github.event_name == 'schedule' || steps.changes.outputs.salesforce == 'true' || steps.changes.outputs.file_processing == 'true' }}
+        shell: script -q -e -c "bash --noprofile --norc -eo pipefail {0}"
+        run: |
+          py.test \
+            -n 8 \
+            --dist loadfile \
+            --durations=8 \
+            -o junit_family=xunit2 \
+            -xv \
+            --ff \
+            backend/tests/daily/connectors/salesforce
+
+      - name: Run GitHub Connector Tests
+        if: ${{ github.event_name == 'schedule' || steps.changes.outputs.github == 'true' || steps.changes.outputs.file_processing == 'true' }}
+        shell: script -q -e -c "bash --noprofile --norc -eo pipefail {0}"
+        run: |
+          py.test \
+            -n 8 \
+            --dist loadfile \
+            --durations=8 \
+            -o junit_family=xunit2 \
+            -xv \
+            --ff \
+            backend/tests/daily/connectors/github
+
+      - name: Alert on Failure
+        if: failure() && github.event_name == 'schedule'
+        env:
+          SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
+        run: |
+          curl -X POST \
+            -H 'Content-type: application/json' \
+            --data '{"text":"Scheduled Connector Tests failed! Check the run at: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}"}' \
+            $SLACK_WEBHOOK

.github/workflows/pr-python-model-tests.yml

@@ -0,0 +1,149 @@
+name: Model Server Tests
+
+on:
+  schedule:
+    # This cron expression runs the job daily at 16:00 UTC (9am PT)
+    - cron: "0 16 * * *"
+  workflow_dispatch:
+    inputs:
+      branch:
+        description: 'Branch to run the workflow on'
+        required: false
+        default: 'main'
+        
+env:
+  # Bedrock
+  AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
+  AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
+  AWS_REGION_NAME: ${{ vars.AWS_REGION_NAME }}
+
+  # API keys for testing
+  COHERE_API_KEY: ${{ secrets.COHERE_API_KEY }}
+  LITELLM_API_KEY: ${{ secrets.LITELLM_API_KEY }}
+  LITELLM_API_URL: ${{ secrets.LITELLM_API_URL }}
+  OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
+  AZURE_API_KEY: ${{ secrets.AZURE_API_KEY }}
+  AZURE_API_URL: ${{ vars.AZURE_API_URL }}
+
+jobs:
+  model-check:
+    # See https://runs-on.com/runners/linux/
+    runs-on: [runs-on,runner=8cpu-linux-x64,"run-id=${{ github.run_id }}"]
+
+    env:
+      PYTHONPATH: ./backend
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Login to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      # tag every docker image with "test" so that we can spin up the correct set
+      # of images during testing
+
+      # We don't need to build the Web Docker image since it's not yet used
+      # in the integration tests. We have a separate action to verify that it builds
+      # successfully.
+      - name: Pull Model Server Docker image
+        run: |
+          docker pull onyxdotapp/onyx-model-server:latest
+          docker tag onyxdotapp/onyx-model-server:latest onyxdotapp/onyx-model-server:test
+          
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+          cache: "pip"
+          cache-dependency-path: |
+            backend/requirements/default.txt
+            backend/requirements/dev.txt
+
+      - name: Install Dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install --retries 5 --timeout 30 -r backend/requirements/default.txt
+          pip install --retries 5 --timeout 30 -r backend/requirements/dev.txt
+
+      - name: Start Docker containers
+        run: |
+          cd deployment/docker_compose
+          ENABLE_PAID_ENTERPRISE_EDITION_FEATURES=true \
+          AUTH_TYPE=basic \
+          REQUIRE_EMAIL_VERIFICATION=false \
+          DISABLE_TELEMETRY=true \
+          IMAGE_TAG=test \
+          docker compose -f docker-compose.model-server-test.yml up -d indexing_model_server
+        id: start_docker
+
+      - name: Wait for service to be ready
+        run: |
+          echo "Starting wait-for-service script..."
+
+          start_time=$(date +%s)
+          timeout=300  # 5 minutes in seconds
+
+          while true; do
+            current_time=$(date +%s)
+            elapsed_time=$((current_time - start_time))
+            
+            if [ $elapsed_time -ge $timeout ]; then
+              echo "Timeout reached. Service did not become ready in 5 minutes."
+              exit 1
+            fi
+            
+            # Use curl with error handling to ignore specific exit code 56
+            response=$(curl -s -o /dev/null -w "%{http_code}" http://localhost:9000/api/health || echo "curl_error")
+            
+            if [ "$response" = "200" ]; then
+              echo "Service is ready!"
+              break
+            elif [ "$response" = "curl_error" ]; then
+              echo "Curl encountered an error, possibly exit code 56. Continuing to retry..."
+            else
+              echo "Service not ready yet (HTTP status $response). Retrying in 5 seconds..."
+            fi
+            
+            sleep 5
+          done
+          echo "Finished waiting for service."
+          
+      - name: Run Tests
+        shell: script -q -e -c "bash --noprofile --norc -eo pipefail {0}"
+        run: |
+          py.test -o junit_family=xunit2 -xv --ff backend/tests/daily/llm
+          py.test -o junit_family=xunit2 -xv --ff backend/tests/daily/embedding
+
+      - name: Alert on Failure
+        if: failure() && github.event_name == 'schedule'
+        env:
+          SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
+        run: |
+          curl -X POST \
+            -H 'Content-type: application/json' \
+            --data '{"text":"Scheduled Model Tests failed! Check the run at: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}"}' \
+            $SLACK_WEBHOOK
+            
+      - name: Dump all-container logs (optional)
+        if: always()
+        run: |
+          cd deployment/docker_compose
+          docker compose -f docker-compose.model-server-test.yml logs --no-color > $GITHUB_WORKSPACE/docker-compose.log || true
+
+      - name: Upload logs
+        if: always()
+        uses: actions/upload-artifact@v4
+        with:
+          name: docker-all-logs
+          path: ${{ github.workspace }}/docker-compose.log
+          
+      - name: Stop Docker containers
+        if: always()
+        run: |
+          cd deployment/docker_compose
+          docker compose -f docker-compose.model-server-test.yml down -v
+          

.github/workflows/pr-python-tests.yml

@@ -0,0 +1,45 @@
+name: Python Unit Tests
+
+on:
+  merge_group:
+  pull_request:
+    branches:
+      - main
+      - 'release/**'
+
+jobs:
+  backend-check:
+    # See https://runs-on.com/runners/linux/
+    runs-on: [runs-on,runner=8cpu-linux-x64,"run-id=${{ github.run_id }}"]
+
+    env:
+      PYTHONPATH: ./backend
+      REDIS_CLOUD_PYTEST_PASSWORD: ${{ secrets.REDIS_CLOUD_PYTEST_PASSWORD }}
+      SF_USERNAME: ${{ secrets.SF_USERNAME }}
+      SF_PASSWORD: ${{ secrets.SF_PASSWORD }}
+      SF_SECURITY_TOKEN: ${{ secrets.SF_SECURITY_TOKEN }}
+      
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: '3.11'
+        cache: 'pip'
+        cache-dependency-path: |
+          backend/requirements/default.txt
+          backend/requirements/dev.txt
+          backend/requirements/model_server.txt
+
+    - name: Install Dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install --retries 5 --timeout 30 -r backend/requirements/default.txt
+        pip install --retries 5 --timeout 30 -r backend/requirements/dev.txt
+        pip install --retries 5 --timeout 30 -r backend/requirements/model_server.txt
+
+    - name: Run Tests
+      shell: script -q -e -c "bash --noprofile --norc -eo pipefail {0}"
+      run: py.test -o junit_family=xunit2 -xv --ff backend/tests/unit

.github/workflows/pr-quality-checks.yml

@@ -0,0 +1,23 @@
+name: Quality Checks PR
+concurrency:
+  group: Quality-Checks-PR-${{ github.workflow }}-${{ github.head_ref || github.event.workflow_run.head_branch || github.run_id }}
+  cancel-in-progress: true
+
+on:
+  merge_group:
+  pull_request: null
+
+jobs:
+  quality-checks:
+    # See https://runs-on.com/runners/linux/
+    runs-on: [runs-on,runner=8cpu-linux-x64,"run-id=${{ github.run_id }}"]
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+      - uses: pre-commit/action@v3.0.1
+        with:
+          extra_args: ${{ github.event_name == 'pull_request' && format('--from-ref {0} --to-ref {1}', github.event.pull_request.base.sha, github.event.pull_request.head.sha) || '' }}

.github/workflows/sync_foss.yml

@@ -0,0 +1,47 @@
+name: Sync FOSS Repo
+
+on:
+  schedule:
+    # Run daily at 3am PT (11am UTC during PST)
+    - cron: '0 11 * * *'
+  workflow_dispatch:
+
+jobs:
+  sync-foss:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+    steps:
+      - name: Checkout main Onyx repo
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Install git-filter-repo
+        run: |
+          sudo apt-get update && sudo apt-get install -y git-filter-repo
+
+      - name: Configure SSH for deploy key
+        env:
+          FOSS_REPO_DEPLOY_KEY: ${{ secrets.FOSS_REPO_DEPLOY_KEY }}
+        run: |
+          mkdir -p ~/.ssh
+          echo "$FOSS_REPO_DEPLOY_KEY" > ~/.ssh/id_ed25519
+          chmod 600 ~/.ssh/id_ed25519
+          ssh-keyscan github.com >> ~/.ssh/known_hosts
+
+      - name: Set Git config
+        run: |
+          git config --global user.name "onyx-bot"
+          git config --global user.email "bot@onyx.app"
+
+      - name: Build FOSS version
+        run: bash backend/scripts/make_foss_repo.sh
+
+      - name: Push to FOSS repo
+        env:
+          FOSS_REPO_URL: git@github.com:onyx-dot-app/onyx-foss.git
+        run: |
+          cd /tmp/foss_repo
+          git remote add public "$FOSS_REPO_URL"
+          git push --force public main

.github/workflows/tag-nightly.yml

@@ -0,0 +1,56 @@
+name: Nightly Tag Push
+
+on:
+  schedule:
+    - cron: "0 10 * * *" # Runs every day at 2 AM PST / 3 AM PDT / 10 AM UTC
+
+permissions:
+  contents: write # Allows pushing tags to the repository
+
+jobs:
+  create-and-push-tag:
+    runs-on: [runs-on, runner=2cpu-linux-x64, "run-id=${{ github.run_id }}"]
+
+    steps:
+      # actions using GITHUB_TOKEN cannot trigger another workflow, but we do want this to trigger docker pushes
+      # see https://github.com/orgs/community/discussions/27028#discussioncomment-3254367 for the workaround we
+      # implement here which needs an actual user's deploy key
+
+      # Additional NOTE: even though this is named "rkuo", the actual key is tied to the onyx repo
+      # and not rkuo's personal account. It is fine to leave this key as is!
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          ssh-key: "${{ secrets.RKUO_DEPLOY_KEY }}"
+
+      - name: Set up Git user
+        run: |
+          git config user.name "Richard Kuo [bot]"
+          git config user.email "rkuo[bot]@onyx.app"
+
+      - name: Check for existing nightly tag
+        id: check_tag
+        run: |
+          if git tag --points-at HEAD --list "nightly-latest*" | grep -q .; then
+            echo "A tag starting with 'nightly-latest' already exists on HEAD."
+            echo "tag_exists=true" >> $GITHUB_OUTPUT
+          else
+            echo "No tag starting with 'nightly-latest' exists on HEAD."
+            echo "tag_exists=false" >> $GITHUB_OUTPUT
+          fi
+
+      # don't tag again if HEAD already has a nightly-latest tag on it
+      - name: Create Nightly Tag
+        if: steps.check_tag.outputs.tag_exists == 'false'
+        env:
+          DATE: ${{ github.run_id }}
+        run: |
+          TAG_NAME="nightly-latest-$(date +'%Y%m%d')"
+          echo "Creating tag: $TAG_NAME"
+          git tag $TAG_NAME
+
+      - name: Push Tag
+        if: steps.check_tag.outputs.tag_exists == 'false'
+        run: |
+          TAG_NAME="nightly-latest-$(date +'%Y%m%d')"
+          git push origin $TAG_NAME

.gitignore

@@ -0,0 +1,46 @@
+# editors
+.vscode
+.zed
+
+# macos
+.DS_store
+
+# python
+.venv
+.mypy_cache
+.idea
+
+# testing
+/web/test-results/
+backend/onyx/agent_search/main/test_data.json
+backend/tests/regression/answer_quality/test_data.json
+backend/tests/regression/search_quality/eval-*
+backend/tests/regression/search_quality/search_eval_config.yaml
+backend/tests/regression/search_quality/*.json
+backend/onyx/evals/data/
+*.log
+
+# secret files
+.env
+jira_test_env
+settings.json
+
+# others
+/deployment/data/nginx/app.conf
+*.sw?
+/backend/tests/regression/answer_quality/search_test_config.yaml
+*.egg-info
+
+# Claude
+AGENTS.md
+CLAUDE.md
+
+# Local .terraform directories
+**/.terraform/*
+
+# Local .tfstate files
+*.tfstate
+*.tfstate.*
+
+# Local .terraform.lock.hcl file
+.terraform.lock.hcl

.mcp.json.template

@@ -0,0 +1,8 @@
+{
+  "mcpServers": {
+    "onyx-mcp": {
+      "type": "http",
+      "url": "http://localhost:8000/mcp"
+    }
+  }
+}

.pre-commit-config.yaml

@@ -0,0 +1,93 @@
+repos:
+  - repo: https://github.com/psf/black
+    rev: 25.1.0
+    hooks:
+    - id: black
+      language_version: python3.11
+
+  # this is a fork which keeps compatibility with black
+  - repo: https://github.com/wimglenn/reorder-python-imports-black
+    rev: v3.14.0
+    hooks:
+    - id: reorder-python-imports
+      args: ['--py311-plus', '--application-directories=backend/']
+      # need to ignore alembic files, since reorder-python-imports gets confused
+      # and thinks that alembic is a local package since there is a folder
+      # in the backend directory called `alembic`
+      exclude: ^backend/alembic/
+
+  # These settings will remove unused imports with side effects
+  # Note: The repo currently does not and should not have imports with side effects
+  - repo: https://github.com/PyCQA/autoflake
+    rev: v2.3.1
+    hooks:
+      - id: autoflake
+        args: [ '--remove-all-unused-imports', '--remove-unused-variables', '--in-place' , '--recursive']
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    # Ruff version.
+    rev: v0.11.4
+    hooks:
+      - id: ruff
+
+  - repo: https://github.com/pre-commit/mirrors-prettier
+    rev: v3.1.0
+    hooks:
+    - id: prettier
+      types_or: [html, css, javascript, ts, tsx]
+      language_version: system
+
+  - repo: https://github.com/sirwart/ripsecrets
+    rev: v0.1.11
+    hooks:
+      - id: ripsecrets
+        args:
+        - --additional-pattern
+        - ^sk-[A-Za-z0-9_\-]{20,}$
+
+
+  - repo: local
+    hooks:
+      - id: terraform-fmt
+        name: terraform fmt
+        entry: terraform fmt -recursive
+        language: system
+        pass_filenames: false
+        files: \.tf$
+      - id: check-lazy-imports
+        name: Check lazy imports are not directly imported
+        entry: python3 backend/scripts/check_lazy_imports.py
+        language: system
+        files: ^backend/(?!\.venv/).*\.py$
+        pass_filenames: false
+        # Note: pass_filenames is false because tsc must check the entire
+        # project, but the files filter ensures this only runs when relevant
+        # files change. Using --incremental for faster subsequent checks.
+
+  # We would like to have a mypy pre-commit hook, but due to the fact that
+  # pre-commit runs in it's own isolated environment, we would need to install
+  # and keep in sync all dependencies so mypy has access to the appropriate type
+  # stubs. This does not seem worth it at the moment, so for now we will stick to
+  # having mypy run via Github Actions / manually by contributors
+  # - repo: https://github.com/pre-commit/mirrors-mypy
+  #   rev: v1.1.1
+  #   hooks:
+  #     - id: mypy
+  #       exclude: ^tests/
+  #       # below are needed for type stubs since pre-commit runs in it's own
+  #       # isolated environment. Unfortunately, this needs to be kept in sync
+  #       # with requirements/dev.txt + requirements/default.txt
+  #       additional_dependencies: [
+  #         alembic==1.10.4,
+  #         types-beautifulsoup4==4.12.0.3,
+  #         types-html5lib==1.1.11.13,
+  #         types-oauthlib==3.2.0.9,
+  #         types-psycopg2==2.9.21.10,
+  #         types-python-dateutil==2.8.19.13,
+  #         types-regex==2023.3.23.1,
+  #         types-requests==2.28.11.17,
+  #         types-retry==0.9.9.3,
+  #         types-urllib3==1.26.25.11
+  #       ]
+  #       # TODO: add back once errors are addressed
+  #       # args: [--strict]

.prettierignore

@@ -0,0 +1 @@
+backend/tests/integration/tests/pruning/website

.vscode/env_template.txt

@@ -0,0 +1,83 @@
+# Copy this file to .env in the .vscode folder
+# Fill in the <REPLACE THIS> values as needed, it is recommended to set the GEN_AI_API_KEY value to avoid having to set up an LLM in the UI
+# Also check out onyx/backend/scripts/restart_containers.sh for a script to restart the containers which Onyx relies on outside of VSCode/Cursor processes
+
+# For local dev, often user Authentication is not needed
+AUTH_TYPE=disabled
+
+# Skip warm up for dev
+SKIP_WARM_UP=True
+
+# Always keep these on for Dev
+# Logs all model prompts to stdout
+LOG_ONYX_MODEL_INTERACTIONS=True
+# More verbose logging
+LOG_LEVEL=debug
+
+
+# This passes top N results to LLM an additional time for reranking prior to answer generation
+# This step is quite heavy on token usage so we disable it for dev generally
+DISABLE_LLM_DOC_RELEVANCE=False
+
+
+# Useful if you want to toggle auth on/off (google_oauth/OIDC specifically)
+OAUTH_CLIENT_ID=<REPLACE THIS>
+OAUTH_CLIENT_SECRET=<REPLACE THIS>
+OPENID_CONFIG_URL=<REPLACE THIS>
+SAML_CONF_DIR=/<ABSOLUTE PATH TO ONYX>/onyx/backend/ee/onyx/configs/saml_config
+
+# Generally not useful for dev, we don't generally want to set up an SMTP server for dev
+REQUIRE_EMAIL_VERIFICATION=False
+
+
+# Set these so if you wipe the DB, you don't end up having to go through the UI every time
+GEN_AI_API_KEY=<REPLACE THIS>
+OPENAI_API_KEY=<REPLACE THIS>
+# If answer quality isn't important for dev, use gpt-4o-mini since it's cheaper
+GEN_AI_MODEL_VERSION=gpt-4o
+FAST_GEN_AI_MODEL_VERSION=gpt-4o
+
+# For Onyx Slack Bot, overrides the UI values so no need to set this up via UI every time
+# Only needed if using OnyxBot
+#ONYX_BOT_SLACK_APP_TOKEN=<REPLACE THIS>
+#ONYX_BOT_SLACK_BOT_TOKEN=<REPLACE THIS>
+
+
+# Python stuff
+PYTHONPATH=../backend
+PYTHONUNBUFFERED=1
+
+
+# Internet Search
+EXA_API_KEY=<REPLACE THIS>
+
+
+# Enable the full set of Danswer Enterprise Edition features
+# NOTE: DO NOT ENABLE THIS UNLESS YOU HAVE A PAID ENTERPRISE LICENSE (or if you are using this for local testing/development)
+ENABLE_PAID_ENTERPRISE_EDITION_FEATURES=False
+
+# Agent Search configs  # TODO: Remove give proper namings
+AGENT_RETRIEVAL_STATS=False   # Note: This setting will incur substantial re-ranking effort
+AGENT_RERANKING_STATS=True
+AGENT_MAX_QUERY_RETRIEVAL_RESULTS=20
+AGENT_RERANKING_MAX_QUERY_RETRIEVAL_RESULTS=20
+
+# S3 File Store Configuration (MinIO for local development)
+S3_ENDPOINT_URL=http://localhost:9004
+S3_FILE_STORE_BUCKET_NAME=onyx-file-store-bucket
+S3_AWS_ACCESS_KEY_ID=minioadmin
+S3_AWS_SECRET_ACCESS_KEY=minioadmin
+
+# Show extra/uncommon connectors
+SHOW_EXTRA_CONNECTORS=True
+
+# Local langsmith tracing
+LANGSMITH_TRACING="true"
+LANGSMITH_ENDPOINT="https://api.smith.langchain.com"
+LANGSMITH_API_KEY=<REPLACE_THIS>
+LANGSMITH_PROJECT=<REPLACE_THIS>
+
+# Local Confluence OAuth testing
+# OAUTH_CONFLUENCE_CLOUD_CLIENT_ID=<REPLACE_THIS>
+# OAUTH_CONFLUENCE_CLOUD_CLIENT_SECRET=<REPLACE_THIS>
+# NEXT_PUBLIC_TEST_ENV=True

.vscode/launch.template.jsonc

@@ -0,0 +1,586 @@
+/* Copy this file into '.vscode/launch.json' or merge its contents into your existing configurations. */
+
+{
+  // Use IntelliSense to learn about possible attributes.
+  // Hover to view descriptions of existing attributes.
+  // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
+  "version": "0.2.0",
+  "compounds": [
+    {
+      // Dummy entry used to label the group
+      "name": "--- Compound ---",
+      "configurations": ["--- Individual ---"],
+      "presentation": {
+        "group": "1"
+      }
+    },
+    {
+      "name": "Run All Onyx Services",
+      "configurations": [
+        "Web Server",
+        "Model Server",
+        "API Server",
+        "Slack Bot",
+        "Celery primary",
+        "Celery light",
+        "Celery background",
+        "Celery docfetching",
+        "Celery docprocessing",
+        "Celery beat"
+      ],
+      "presentation": {
+        "group": "1"
+      }
+    },
+    {
+      "name": "Web / Model / API",
+      "configurations": ["Web Server", "Model Server", "API Server"],
+      "presentation": {
+        "group": "1"
+      }
+    },
+    {
+      "name": "Celery (lightweight mode)",
+      "configurations": [
+        "Celery primary",
+        "Celery background",
+        "Celery beat"
+      ],
+      "presentation": {
+        "group": "1"
+      },
+      "stopAll": true
+    },
+    {
+      "name": "Celery (standard mode)",
+      "configurations": [
+        "Celery primary",
+        "Celery light",
+        "Celery heavy",
+        "Celery kg_processing",
+        "Celery monitoring",
+        "Celery user_file_processing",
+        "Celery docfetching",
+        "Celery docprocessing",
+        "Celery beat"
+      ],
+      "presentation": {
+        "group": "1"
+      },
+      "stopAll": true
+    }
+  ],
+  "configurations": [
+    {
+      // Dummy entry used to label the group
+      "name": "--- Individual ---",
+      "type": "node",
+      "request": "launch",
+      "presentation": {
+        "group": "2",
+        "order": 0
+      }
+    },
+    {
+      "name": "Web Server",
+      "type": "node",
+      "request": "launch",
+      "cwd": "${workspaceRoot}/web",
+      "runtimeExecutable": "npm",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "runtimeArgs": ["run", "dev"],
+      "presentation": {
+        "group": "2"
+      },
+      "console": "integratedTerminal",
+      "consoleTitle": "Web Server Console"
+    },
+    {
+      "name": "Model Server",
+      "consoleName": "Model Server",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "uvicorn",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_LEVEL": "DEBUG",
+        "PYTHONUNBUFFERED": "1"
+      },
+      "args": ["model_server.main:app", "--reload", "--port", "9000"],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Model Server Console"
+    },
+    {
+      "name": "API Server",
+      "consoleName": "API Server",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "uvicorn",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_ONYX_MODEL_INTERACTIONS": "True",
+        "LOG_LEVEL": "DEBUG",
+        "PYTHONUNBUFFERED": "1"
+      },
+      "args": ["onyx.main:app", "--reload", "--port", "8080"],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "API Server Console"
+    },
+    // For the listener to access the Slack API,
+    // ONYX_BOT_SLACK_APP_TOKEN & ONYX_BOT_SLACK_BOT_TOKEN need to be set in .env file located in the root of the project
+    {
+      "name": "Slack Bot",
+      "consoleName": "Slack Bot",
+      "type": "debugpy",
+      "request": "launch",
+      "program": "onyx/onyxbot/slack/listener.py",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_LEVEL": "DEBUG",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Slack Bot Console"
+    },
+    {
+      "name": "Celery primary",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "celery",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_LEVEL": "INFO",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": [
+        "-A",
+        "onyx.background.celery.versioned_apps.primary",
+        "worker",
+        "--pool=threads",
+        "--concurrency=4",
+        "--prefetch-multiplier=1",
+        "--loglevel=INFO",
+        "--hostname=primary@%n",
+        "-Q",
+        "celery"
+      ],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Celery primary Console"
+    },
+    {
+      "name": "Celery light",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "celery",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_LEVEL": "INFO",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": [
+        "-A",
+        "onyx.background.celery.versioned_apps.light",
+        "worker",
+        "--pool=threads",
+        "--concurrency=64",
+        "--prefetch-multiplier=8",
+        "--loglevel=INFO",
+        "--hostname=light@%n",
+        "-Q",
+        "vespa_metadata_sync,connector_deletion,doc_permissions_upsert,index_attempt_cleanup"
+      ],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Celery light Console"
+    },
+    {
+      "name": "Celery background",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "celery",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_LEVEL": "INFO",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": [
+        "-A",
+        "onyx.background.celery.versioned_apps.background",
+        "worker",
+        "--pool=threads",
+        "--concurrency=20",
+        "--prefetch-multiplier=4",
+        "--loglevel=INFO",
+        "--hostname=background@%n",
+        "-Q",
+        "vespa_metadata_sync,connector_deletion,doc_permissions_upsert,checkpoint_cleanup,index_attempt_cleanup,docprocessing,connector_doc_fetching,user_files_indexing,connector_pruning,connector_doc_permissions_sync,connector_external_group_sync,csv_generation,kg_processing,monitoring,user_file_processing,user_file_project_sync,user_file_delete"
+      ],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Celery background Console"
+    },
+    {
+      "name": "Celery heavy",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "celery",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_LEVEL": "INFO",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": [
+        "-A",
+        "onyx.background.celery.versioned_apps.heavy",
+        "worker",
+        "--pool=threads",
+        "--concurrency=4",
+        "--prefetch-multiplier=1",
+        "--loglevel=INFO",
+        "--hostname=heavy@%n",
+        "-Q",
+        "connector_pruning,connector_doc_permissions_sync,connector_external_group_sync,csv_generation"
+      ],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Celery heavy Console"
+    },
+    {
+      "name": "Celery kg_processing",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "celery",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_LEVEL": "INFO",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": [
+        "-A",
+        "onyx.background.celery.versioned_apps.kg_processing",
+        "worker",
+        "--pool=threads",
+        "--concurrency=2",
+        "--prefetch-multiplier=1",
+        "--loglevel=INFO",
+        "--hostname=kg_processing@%n",
+        "-Q",
+        "kg_processing"
+      ],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Celery kg_processing Console"
+    },
+    {
+      "name": "Celery monitoring",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "celery",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_LEVEL": "INFO",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": [
+        "-A",
+        "onyx.background.celery.versioned_apps.monitoring",
+        "worker",
+        "--pool=threads",
+        "--concurrency=1",
+        "--prefetch-multiplier=1",
+        "--loglevel=INFO",
+        "--hostname=monitoring@%n",
+        "-Q",
+        "monitoring"
+      ],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Celery monitoring Console"
+    },
+    {
+      "name": "Celery user_file_processing",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "celery",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_LEVEL": "INFO",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": [
+        "-A",
+        "onyx.background.celery.versioned_apps.user_file_processing",
+        "worker",
+        "--pool=threads",
+        "--concurrency=2",
+        "--prefetch-multiplier=1",
+        "--loglevel=INFO",
+        "--hostname=user_file_processing@%n",
+        "-Q",
+        "user_file_processing,user_file_project_sync,user_file_delete"
+      ],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Celery user_file_processing Console"
+    },
+    {
+      "name": "Celery docfetching",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "celery",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_LEVEL": "DEBUG",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": [
+        "-A",
+        "onyx.background.celery.versioned_apps.docfetching",
+        "worker",
+        "--pool=threads",
+        "--concurrency=1",
+        "--prefetch-multiplier=1",
+        "--loglevel=INFO",
+        "--hostname=docfetching@%n",
+        "-Q",
+        "connector_doc_fetching,user_files_indexing"
+      ],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Celery docfetching Console",
+      "justMyCode": false
+    },
+    {
+      "name": "Celery docprocessing",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "celery",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "ENABLE_MULTIPASS_INDEXING": "false",
+        "LOG_LEVEL": "DEBUG",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": [
+        "-A",
+        "onyx.background.celery.versioned_apps.docprocessing",
+        "worker",
+        "--pool=threads",
+        "--concurrency=6",
+        "--prefetch-multiplier=1",
+        "--loglevel=INFO",
+        "--hostname=docprocessing@%n",
+        "-Q",
+        "docprocessing"
+      ],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Celery docprocessing Console"
+    },
+    {
+      "name": "Celery beat",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "celery",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_LEVEL": "DEBUG",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": [
+        "-A",
+        "onyx.background.celery.versioned_apps.beat",
+        "beat",
+        "--loglevel=INFO"
+      ],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Celery beat Console"
+    },
+    {
+      "name": "Pytest",
+      "consoleName": "Pytest",
+      "type": "debugpy",
+      "request": "launch",
+      "module": "pytest",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_LEVEL": "DEBUG",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": [
+        "-v"
+        // Specify a specific module/test to run or provide nothing to run all tests
+        // "tests/unit/onyx/llm/answering/test_prune_and_merge.py"
+      ],
+      "presentation": {
+        "group": "2"
+      },
+      "consoleTitle": "Pytest Console"
+    },
+    {
+      // Dummy entry used to label the group
+      "name": "--- Tasks ---",
+      "type": "node",
+      "request": "launch",
+      "presentation": {
+        "group": "3",
+        "order": 0
+      }
+    },
+    {
+      "name": "Clear and Restart External Volumes and Containers",
+      "type": "node",
+      "request": "launch",
+      "runtimeExecutable": "bash",
+      "runtimeArgs": [
+        "${workspaceFolder}/backend/scripts/restart_containers.sh"
+      ],
+      "cwd": "${workspaceFolder}",
+      "console": "integratedTerminal",
+      "stopOnEntry": true,
+      "presentation": {
+        "group": "3"
+      }
+    },
+    {
+      "name": "Eval CLI",
+      "type": "debugpy",
+      "request": "launch",
+      "program": "${workspaceFolder}/backend/onyx/evals/eval_cli.py",
+      "cwd": "${workspaceFolder}/backend",
+      "console": "integratedTerminal",
+      "justMyCode": false,
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "presentation": {
+        "group": "3"
+      },
+      "env": {
+        "LOG_LEVEL": "INFO",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": ["--verbose"],
+      "consoleTitle": "Eval CLI Console"
+    },
+    {
+      // Celery jobs launched through a single background script (legacy)
+      // Recommend using the "Celery (all)" compound launch instead.
+      "name": "Background Jobs",
+      "consoleName": "Background Jobs",
+      "type": "debugpy",
+      "request": "launch",
+      "program": "scripts/dev_run_background_jobs.py",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.vscode/.env",
+      "env": {
+        "LOG_ONYX_MODEL_INTERACTIONS": "True",
+        "LOG_LEVEL": "DEBUG",
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      }
+    },
+    {
+      "name": "Install Python Requirements",
+      "type": "node",
+      "request": "launch",
+      "runtimeExecutable": "bash",
+      "runtimeArgs": [
+        "-c",
+        "pip install -r backend/requirements/default.txt && pip install -r backend/requirements/dev.txt && pip install -r backend/requirements/ee.txt && pip install -r backend/requirements/model_server.txt"
+      ],
+      "cwd": "${workspaceFolder}",
+      "console": "integratedTerminal",
+      "presentation": {
+        "group": "3"
+      }
+    },
+    {
+      // script to generate the openapi schema
+      "name": "Onyx OpenAPI Schema Generator",
+      "type": "debugpy",
+      "request": "launch",
+      "program": "scripts/onyx_openapi_schema.py",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.env",
+      "env": {
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": ["--filename", "generated/openapi.json"]
+    },
+    {
+      // script to debug multi tenant db issues
+      "name": "Onyx DB Manager (Top Chunks)",
+      "type": "debugpy",
+      "request": "launch",
+      "program": "scripts/debugging/onyx_db.py",
+      "cwd": "${workspaceFolder}/backend",
+      "envFile": "${workspaceFolder}/.env",
+      "env": {
+        "PYTHONUNBUFFERED": "1",
+        "PYTHONPATH": "."
+      },
+      "args": [
+        "--password",
+        "your_password_here",
+        "--port",
+        "5433",
+        "--report",
+        "top-chunks",
+        "--filename",
+        "generated/tenants_by_num_docs.csv"
+      ]
+    },
+    {
+      "name": "Debug React Web App in Chrome",
+      "type": "chrome",
+      "request": "launch",
+      "url": "http://localhost:3000",
+      "webRoot": "${workspaceFolder}/web"
+    }
+  ]
+}

.vscode/tasks.template.jsonc

@@ -0,0 +1,101 @@
+{
+    "version": "2.0.0",
+    "tasks": [
+        {
+            "type": "austin",
+            "label": "Profile celery beat",
+            "envFile": "${workspaceFolder}/.env",
+            "options": {
+              "cwd": "${workspaceFolder}/backend"
+            },
+            "command": [
+                "sudo",
+                "-E"
+            ],
+            "args": [
+              "celery",
+              "-A",
+              "onyx.background.celery.versioned_apps.beat",
+              "beat",
+              "--loglevel=INFO"
+            ]
+        },
+        {
+            "type": "shell",
+            "label": "Generate Onyx OpenAPI Python client",
+            "cwd": "${workspaceFolder}/backend",
+            "envFile": "${workspaceFolder}/.env",
+            "options": {
+              "cwd": "${workspaceFolder}/backend"
+            },
+            "command": [
+                "openapi-generator"
+            ],
+            "args": [
+                "generate",
+                "-i",
+                "generated/openapi.json",
+                "-g",
+                "python",
+                "-o",
+                "generated/onyx_openapi_client",
+                "--package-name",
+                "onyx_openapi_client",
+            ]
+        },
+        {
+            "type": "shell",
+            "label": "Generate Typescript Fetch client (openapi-generator)",
+            "envFile": "${workspaceFolder}/.env",
+            "options": {
+              "cwd": "${workspaceFolder}"
+            },
+            "command": [
+                "openapi-generator"
+            ],
+            "args": [
+                "generate",
+                "-i",
+                "backend/generated/openapi.json",
+                "-g",
+                "typescript-fetch",
+                "-o",
+                "${workspaceFolder}/web/src/lib/generated/onyx_api",
+                "--additional-properties=disallowAdditionalPropertiesIfNotPresent=false,legacyDiscriminatorBehavior=false,supportsES6=true",
+            ]
+        },
+        {
+            "type": "shell",
+            "label": "Generate TypeScript Client (openapi-ts)",
+            "envFile": "${workspaceFolder}/.env",
+            "options": {
+              "cwd": "${workspaceFolder}/web"
+            },
+            "command": [
+                "npx"
+            ],
+            "args": [
+                "openapi-typescript",
+                "../backend/generated/openapi.json",
+                "--output",
+                "./src/lib/generated/onyx-schema.ts",
+            ]
+        },
+        {
+            "type": "shell",
+            "label": "Generate TypeScript Client (orval)",
+            "envFile": "${workspaceFolder}/.env",
+            "options": {
+              "cwd": "${workspaceFolder}/web"
+            },
+            "command": [
+                "npx"
+            ],
+            "args": [
+            	"orval",
+                "--config",
+                "orval.config.js",
+            ]
+        }
+    ]
+}

AGENTS.md.template

@@ -0,0 +1,327 @@
+# AGENTS.md
+
+This file provides guidance to Codex when working with code in this repository.
+
+## KEY NOTES
+
+- If you run into any missing python dependency errors, try running your command with `source backend/.venv/bin/activate` \
+to assume the python venv.
+- To make tests work, check the `.env` file at the root of the project to find an OpenAI key.
+- If using `playwright` to explore the frontend, you can usually log in with username `a@test.com` and password
+`a`. The app can be accessed at `http://localhost:3000`.
+- You should assume that all Onyx services are running. To verify, you can check the `backend/log` directory to
+make sure we see logs coming out from the relevant service.
+- To connect to the Postgres database, use: `docker exec -it onyx-relational_db-1 psql -U postgres -c "<SQL>"`
+- When making calls to the backend, always go through the frontend. E.g. make a call to `http://localhost:3000/api/persona` not `http://localhost:8080/api/persona`
+- Put ALL db operations under the `backend/onyx/db` / `backend/ee/onyx/db` directories. Don't run queries
+outside of those directories.
+
+## Project Overview
+
+**Onyx** (formerly Danswer) is an open-source Gen-AI and Enterprise Search platform that connects to company documents, apps, and people. It features a modular architecture with both Community Edition (MIT licensed) and Enterprise Edition offerings.
+
+
+### Background Workers (Celery)
+
+Onyx uses Celery for asynchronous task processing with multiple specialized workers:
+
+#### Worker Types
+
+1. **Primary Worker** (`celery_app.py`)
+   - Coordinates core background tasks and system-wide operations
+   - Handles connector management, document sync, pruning, and periodic checks
+   - Runs with 4 threads concurrency
+   - Tasks: connector deletion, vespa sync, pruning, LLM model updates, user file sync
+
+2. **Docfetching Worker** (`docfetching`)
+   - Fetches documents from external data sources (connectors)
+   - Spawns docprocessing tasks for each document batch
+   - Implements watchdog monitoring for stuck connectors
+   - Configurable concurrency (default from env)
+
+3. **Docprocessing Worker** (`docprocessing`)
+   - Processes fetched documents through the indexing pipeline:
+     - Upserts documents to PostgreSQL
+     - Chunks documents and adds contextual information
+     - Embeds chunks via model server
+     - Writes chunks to Vespa vector database
+     - Updates document metadata
+   - Configurable concurrency (default from env)
+
+4. **Light Worker** (`light`)
+   - Handles lightweight, fast operations
+   - Tasks: vespa operations, document permissions sync, external group sync
+   - Higher concurrency for quick tasks
+
+5. **Heavy Worker** (`heavy`)
+   - Handles resource-intensive operations
+   - Primary task: document pruning operations
+   - Runs with 4 threads concurrency
+
+6. **KG Processing Worker** (`kg_processing`)
+   - Handles Knowledge Graph processing and clustering
+   - Builds relationships between documents
+   - Runs clustering algorithms
+   - Configurable concurrency
+
+7. **Monitoring Worker** (`monitoring`)
+   - System health monitoring and metrics collection
+   - Monitors Celery queues, process memory, and system status
+   - Single thread (monitoring doesn't need parallelism)
+   - Cloud-specific monitoring tasks
+
+8. **User File Processing Worker** (`user_file_processing`)
+   - Processes user-uploaded files
+   - Handles user file indexing and project synchronization
+   - Configurable concurrency
+
+9. **Beat Worker** (`beat`)
+   - Celery's scheduler for periodic tasks
+   - Uses DynamicTenantScheduler for multi-tenant support
+   - Schedules tasks like:
+     - Indexing checks (every 15 seconds)
+     - Connector deletion checks (every 20 seconds)
+     - Vespa sync checks (every 20 seconds)
+     - Pruning checks (every 20 seconds)
+     - KG processing (every 60 seconds)
+     - Monitoring tasks (every 5 minutes)
+     - Cleanup tasks (hourly)
+
+#### Worker Deployment Modes
+
+Onyx supports two deployment modes for background workers, controlled by the `USE_LIGHTWEIGHT_BACKGROUND_WORKER` environment variable:
+
+**Lightweight Mode** (default, `USE_LIGHTWEIGHT_BACKGROUND_WORKER=true`):
+- Runs a single consolidated `background` worker that handles all background tasks:
+  - Pruning operations (from `heavy` worker)
+  - Knowledge graph processing (from `kg_processing` worker)
+  - Monitoring tasks (from `monitoring` worker)
+  - User file processing (from `user_file_processing` worker)
+- Lower resource footprint (single worker process)
+- Suitable for smaller deployments or development environments
+- Default concurrency: 6 threads
+
+**Standard Mode** (`USE_LIGHTWEIGHT_BACKGROUND_WORKER=false`):
+- Runs separate specialized workers as documented above (heavy, kg_processing, monitoring, user_file_processing)
+- Better isolation and scalability
+- Can scale individual workers independently based on workload
+- Suitable for production deployments with higher load
+
+The deployment mode affects:
+- **Backend**: Worker processes spawned by supervisord or dev scripts
+- **Helm**: Which Kubernetes deployments are created
+- **Dev Environment**: Which workers `dev_run_background_jobs.py` spawns
+
+#### Key Features
+
+- **Thread-based Workers**: All workers use thread pools (not processes) for stability
+- **Tenant Awareness**: Multi-tenant support with per-tenant task isolation. There is a 
+middleware layer that automatically finds the appropriate tenant ID when sending tasks 
+via Celery Beat.
+- **Task Prioritization**: High, Medium, Low priority queues
+- **Monitoring**: Built-in heartbeat and liveness checking
+- **Failure Handling**: Automatic retry and failure recovery mechanisms
+- **Redis Coordination**: Inter-process communication via Redis
+- **PostgreSQL State**: Task state and metadata stored in PostgreSQL
+
+
+#### Important Notes
+
+**Defining Tasks**: 
+- Always use `@shared_task` rather than `@celery_app`
+- Put tasks under `background/celery/tasks/` or `ee/background/celery/tasks`
+
+**Defining APIs**:
+When creating new FastAPI APIs, do NOT use the `response_model` field. Instead, just type the
+function.
+
+**Testing Updates**:
+If you make any updates to a celery worker and you want to test these changes, you will need
+to ask me to restart the celery worker. There is no auto-restart on code-change mechanism.
+
+### Code Quality
+```bash
+# Install and run pre-commit hooks
+pre-commit install
+pre-commit run --all-files
+```
+
+NOTE: Always make sure everything is strictly typed (both in Python and Typescript).
+
+## Architecture Overview
+
+### Technology Stack
+- **Backend**: Python 3.11, FastAPI, SQLAlchemy, Alembic, Celery
+- **Frontend**: Next.js 15+, React 18, TypeScript, Tailwind CSS
+- **Database**: PostgreSQL with Redis caching
+- **Search**: Vespa vector database
+- **Auth**: OAuth2, SAML, multi-provider support
+- **AI/ML**: LangChain, LiteLLM, multiple embedding models
+
+### Directory Structure
+
+```
+backend/
+├── onyx/
+│   ├── auth/                    # Authentication & authorization
+│   ├── chat/                    # Chat functionality & LLM interactions
+│   ├── connectors/              # Data source connectors
+│   ├── db/                      # Database models & operations
+│   ├── document_index/          # Vespa integration
+│   ├── federated_connectors/    # External search connectors
+│   ├── llm/                     # LLM provider integrations
+│   └── server/                  # API endpoints & routers
+├── ee/                          # Enterprise Edition features
+├── alembic/                     # Database migrations
+└── tests/                       # Test suites
+
+web/
+├── src/app/                     # Next.js app router pages
+├── src/components/              # Reusable React components
+└── src/lib/                     # Utilities & business logic
+```
+
+## Database & Migrations
+
+### Running Migrations
+```bash
+# Standard migrations
+alembic upgrade head
+
+# Multi-tenant (Enterprise)
+alembic -n schema_private upgrade head
+```
+
+### Creating Migrations
+```bash
+# Create migration
+alembic revision -m "description"
+
+# Multi-tenant migration
+alembic -n schema_private revision -m "description"
+```
+
+Write the migration manually and place it in the file that alembic creates when running the above command.
+
+## Testing Strategy
+
+There are 4 main types of tests within Onyx:
+
+### Unit Tests
+These should not assume any Onyx/external services are available to be called.
+Interactions with the outside world should be mocked using `unittest.mock`. Generally, only 
+write these for complex, isolated modules e.g. `citation_processing.py`.
+
+To run them:
+
+```bash
+python -m dotenv -f .vscode/.env run -- pytest -xv backend/tests/unit
+```
+
+### External Dependency Unit Tests
+These tests assume that all external dependencies of Onyx are available and callable (e.g. Postgres, Redis, 
+MinIO/S3, Vespa are running + OpenAI can be called + any request to the internet is fine + etc.).
+
+However, the actual Onyx containers are not running and with these tests we call the function to test directly.
+We can also mock components/calls at will. 
+
+The goal with these tests are to minimize mocking while giving some flexibility to mock things that are flakey, 
+need strictly controlled behavior, or need to have their internal behavior validated (e.g. verify a function is called
+with certain args, something that would be impossible with proper integration tests).
+
+A great example of this type of test is `backend/tests/external_dependency_unit/connectors/confluence/test_confluence_group_sync.py`.
+
+To run them:
+
+```bash
+python -m dotenv -f .vscode/.env run -- pytest backend/tests/external_dependency_unit
+```
+
+### Integration Tests
+Standard integration tests. Every test in `backend/tests/integration` runs against a real Onyx deployment. We cannot 
+mock anything in these tests. Prefer writing integration tests (or External Dependency Unit Tests if mocking/internal 
+verification is necessary) over any other type of test.
+
+Tests are parallelized at a directory level.
+
+When writing integration tests, make sure to check the root `conftest.py` for useful fixtures + the `backend/tests/integration/common_utils` directory for utilities. Prefer (if one exists), calling the appropriate Manager 
+class in the utils over directly calling the APIs with a library like `requests`. Prefer using fixtures rather than
+calling the utilities directly (e.g. do NOT create admin users with 
+`admin_user = UserManager.create(name="admin_user")`, instead use the `admin_user` fixture).
+
+A great example of this type of test is `backend/tests/integration/dev_apis/test_simple_chat_api.py`.
+
+To run them:
+
+```bash
+python -m dotenv -f .vscode/.env run -- pytest backend/tests/integration
+```
+
+### Playwright (E2E) Tests
+These tests are an even more complete version of the Integration Tests mentioned above. Has all services of Onyx 
+running, *including* the Web Server.
+
+Use these tests for anything that requires significant frontend <-> backend coordination.
+
+Tests are located at `web/tests/e2e`. Tests are written in TypeScript.
+
+To run them:
+
+```bash
+npx playwright test <TEST_NAME>
+```
+
+
+## Logs
+
+When (1) writing integration tests or (2) doing live tests (e.g. curl / playwright) you can get access
+to logs via the `backend/log/<service_name>_debug.log` file. All Onyx services (api_server, web_server, celery_X)
+will be tailing their logs to this file. 
+
+
+## Security Considerations
+
+- Never commit API keys or secrets to repository
+- Use encrypted credential storage for connector credentials
+- Follow RBAC patterns for new features
+- Implement proper input validation with Pydantic models
+- Use parameterized queries to prevent SQL injection
+
+## AI/LLM Integration
+
+- Multiple LLM providers supported via LiteLLM
+- Configurable models per feature (chat, search, embeddings)
+- Streaming support for real-time responses
+- Token management and rate limiting
+- Custom prompts and agent actions
+
+## UI/UX Patterns
+
+- Tailwind CSS with design system in `web/src/components/ui/`
+- Radix UI and Headless UI for accessible components
+- SWR for data fetching and caching
+- Form validation with react-hook-form
+- Error handling with popup notifications
+
+## Creating a Plan
+When creating a plan in the `plans` directory, make sure to include at least these elements:
+
+**Issues to Address**
+What the change is meant to do.
+
+**Important Notes**
+Things you come across in your research that are important to the implementation.
+
+**Implementation strategy**
+How you are going to make the changes happen. High level approach.
+
+**Tests**
+What unit (use rarely), external dependency unit, integration, and playwright tests you plan to write to 
+verify the correct behavior. Don't overtest. Usually, a given change only needs one type of test.
+
+Do NOT include these: *Timeline*, *Rollback plan*
+
+This is a minimal list - feel free to include more. Do NOT write code as part of your plan.
+Keep it high level. You can reference certain files or functions though.
+
+Before writing your plan, make sure to do research. Explore the relevant sections in the codebase.

CLAUDE.md.template

@@ -0,0 +1,332 @@
+# CLAUDE.md
+
+This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
+
+## KEY NOTES
+
+- If you run into any missing python dependency errors, try running your command with `source backend/.venv/bin/activate` \
+to assume the python venv.
+- To make tests work, check the `.env` file at the root of the project to find an OpenAI key.
+- If using `playwright` to explore the frontend, you can usually log in with username `a@test.com` and password
+`a`. The app can be accessed at `http://localhost:3000`.
+- You should assume that all Onyx services are running. To verify, you can check the `backend/log` directory to
+make sure we see logs coming out from the relevant service.
+- To connect to the Postgres database, use: `docker exec -it onyx-relational_db-1 psql -U postgres -c "<SQL>"`
+- When making calls to the backend, always go through the frontend. E.g. make a call to `http://localhost:3000/api/persona` not `http://localhost:8080/api/persona`
+- Put ALL db operations under the `backend/onyx/db` / `backend/ee/onyx/db` directories. Don't run queries
+outside of those directories.
+
+## Project Overview
+
+**Onyx** (formerly Danswer) is an open-source Gen-AI and Enterprise Search platform that connects to company documents, apps, and people. It features a modular architecture with both Community Edition (MIT licensed) and Enterprise Edition offerings.
+
+
+### Background Workers (Celery)
+
+Onyx uses Celery for asynchronous task processing with multiple specialized workers:
+
+#### Worker Types
+
+1. **Primary Worker** (`celery_app.py`)
+   - Coordinates core background tasks and system-wide operations
+   - Handles connector management, document sync, pruning, and periodic checks
+   - Runs with 4 threads concurrency
+   - Tasks: connector deletion, vespa sync, pruning, LLM model updates, user file sync
+
+2. **Docfetching Worker** (`docfetching`)
+   - Fetches documents from external data sources (connectors)
+   - Spawns docprocessing tasks for each document batch
+   - Implements watchdog monitoring for stuck connectors
+   - Configurable concurrency (default from env)
+
+3. **Docprocessing Worker** (`docprocessing`)
+   - Processes fetched documents through the indexing pipeline:
+     - Upserts documents to PostgreSQL
+     - Chunks documents and adds contextual information
+     - Embeds chunks via model server
+     - Writes chunks to Vespa vector database
+     - Updates document metadata
+   - Configurable concurrency (default from env)
+
+4. **Light Worker** (`light`)
+   - Handles lightweight, fast operations
+   - Tasks: vespa operations, document permissions sync, external group sync
+   - Higher concurrency for quick tasks
+
+5. **Heavy Worker** (`heavy`)
+   - Handles resource-intensive operations
+   - Primary task: document pruning operations
+   - Runs with 4 threads concurrency
+
+6. **KG Processing Worker** (`kg_processing`)
+   - Handles Knowledge Graph processing and clustering
+   - Builds relationships between documents
+   - Runs clustering algorithms
+   - Configurable concurrency
+
+7. **Monitoring Worker** (`monitoring`)
+   - System health monitoring and metrics collection
+   - Monitors Celery queues, process memory, and system status
+   - Single thread (monitoring doesn't need parallelism)
+   - Cloud-specific monitoring tasks
+
+8. **User File Processing Worker** (`user_file_processing`)
+   - Processes user-uploaded files
+   - Handles user file indexing and project synchronization
+   - Configurable concurrency
+
+9. **Beat Worker** (`beat`)
+   - Celery's scheduler for periodic tasks
+   - Uses DynamicTenantScheduler for multi-tenant support
+   - Schedules tasks like:
+     - Indexing checks (every 15 seconds)
+     - Connector deletion checks (every 20 seconds)
+     - Vespa sync checks (every 20 seconds)
+     - Pruning checks (every 20 seconds)
+     - KG processing (every 60 seconds)
+     - Monitoring tasks (every 5 minutes)
+     - Cleanup tasks (hourly)
+
+#### Worker Deployment Modes
+
+Onyx supports two deployment modes for background workers, controlled by the `USE_LIGHTWEIGHT_BACKGROUND_WORKER` environment variable:
+
+**Lightweight Mode** (default, `USE_LIGHTWEIGHT_BACKGROUND_WORKER=true`):
+- Runs a single consolidated `background` worker that handles all background tasks:
+  - Light worker tasks (Vespa operations, permissions sync, deletion)
+  - Document processing (indexing pipeline)
+  - Document fetching (connector data retrieval)
+  - Pruning operations (from `heavy` worker)
+  - Knowledge graph processing (from `kg_processing` worker)
+  - Monitoring tasks (from `monitoring` worker)
+  - User file processing (from `user_file_processing` worker)
+- Lower resource footprint (fewer worker processes)
+- Suitable for smaller deployments or development environments
+- Default concurrency: 20 threads (increased to handle combined workload)
+
+**Standard Mode** (`USE_LIGHTWEIGHT_BACKGROUND_WORKER=false`):
+- Runs separate specialized workers as documented above (light, docprocessing, docfetching, heavy, kg_processing, monitoring, user_file_processing)
+- Better isolation and scalability
+- Can scale individual workers independently based on workload
+- Suitable for production deployments with higher load
+
+The deployment mode affects:
+- **Backend**: Worker processes spawned by supervisord or dev scripts
+- **Helm**: Which Kubernetes deployments are created
+- **Dev Environment**: Which workers `dev_run_background_jobs.py` spawns
+
+#### Key Features
+
+- **Thread-based Workers**: All workers use thread pools (not processes) for stability
+- **Tenant Awareness**: Multi-tenant support with per-tenant task isolation. There is a
+middleware layer that automatically finds the appropriate tenant ID when sending tasks
+via Celery Beat.
+- **Task Prioritization**: High, Medium, Low priority queues
+- **Monitoring**: Built-in heartbeat and liveness checking
+- **Failure Handling**: Automatic retry and failure recovery mechanisms
+- **Redis Coordination**: Inter-process communication via Redis
+- **PostgreSQL State**: Task state and metadata stored in PostgreSQL
+
+
+#### Important Notes
+
+**Defining Tasks**: 
+- Always use `@shared_task` rather than `@celery_app`
+- Put tasks under `background/celery/tasks/` or `ee/background/celery/tasks`
+
+**Defining APIs**:
+When creating new FastAPI APIs, do NOT use the `response_model` field. Instead, just type the
+function.
+
+**Testing Updates**:
+If you make any updates to a celery worker and you want to test these changes, you will need
+to ask me to restart the celery worker. There is no auto-restart on code-change mechanism.
+
+### Code Quality
+```bash
+# Install and run pre-commit hooks
+pre-commit install
+pre-commit run --all-files
+```
+
+NOTE: Always make sure everything is strictly typed (both in Python and Typescript).
+
+## Architecture Overview
+
+### Technology Stack
+- **Backend**: Python 3.11, FastAPI, SQLAlchemy, Alembic, Celery
+- **Frontend**: Next.js 15+, React 18, TypeScript, Tailwind CSS
+- **Database**: PostgreSQL with Redis caching
+- **Search**: Vespa vector database
+- **Auth**: OAuth2, SAML, multi-provider support
+- **AI/ML**: LangChain, LiteLLM, multiple embedding models
+
+### Directory Structure
+
+```
+backend/
+├── onyx/
+│   ├── auth/                    # Authentication & authorization
+│   ├── chat/                    # Chat functionality & LLM interactions
+│   ├── connectors/              # Data source connectors
+│   ├── db/                      # Database models & operations
+│   ├── document_index/          # Vespa integration
+│   ├── federated_connectors/    # External search connectors
+│   ├── llm/                     # LLM provider integrations
+│   └── server/                  # API endpoints & routers
+├── ee/                          # Enterprise Edition features
+├── alembic/                     # Database migrations
+└── tests/                       # Test suites
+
+web/
+├── src/app/                     # Next.js app router pages
+├── src/components/              # Reusable React components
+└── src/lib/                     # Utilities & business logic
+```
+
+## Database & Migrations
+
+### Running Migrations
+```bash
+# Standard migrations
+alembic upgrade head
+
+# Multi-tenant (Enterprise)
+alembic -n schema_private upgrade head
+```
+
+### Creating Migrations
+```bash
+# Create migration
+alembic revision -m "description"
+
+# Multi-tenant migration
+alembic -n schema_private revision -m "description"
+```
+
+Write the migration manually and place it in the file that alembic creates when running the above command.
+
+## Testing Strategy
+
+First, you must activate the virtual environment with `source .venv/bin/activate`. 
+
+There are 4 main types of tests within Onyx:
+
+### Unit Tests
+These should not assume any Onyx/external services are available to be called.
+Interactions with the outside world should be mocked using `unittest.mock`. Generally, only 
+write these for complex, isolated modules e.g. `citation_processing.py`.
+
+To run them:
+
+```bash
+pytest -xv backend/tests/unit
+```
+
+### External Dependency Unit Tests
+These tests assume that all external dependencies of Onyx are available and callable (e.g. Postgres, Redis, 
+MinIO/S3, Vespa are running + OpenAI can be called + any request to the internet is fine + etc.).
+
+However, the actual Onyx containers are not running and with these tests we call the function to test directly.
+We can also mock components/calls at will. 
+
+The goal with these tests are to minimize mocking while giving some flexibility to mock things that are flakey, 
+need strictly controlled behavior, or need to have their internal behavior validated (e.g. verify a function is called
+with certain args, something that would be impossible with proper integration tests).
+
+A great example of this type of test is `backend/tests/external_dependency_unit/connectors/confluence/test_confluence_group_sync.py`.
+
+To run them:
+
+```bash
+python -m dotenv -f .vscode/.env run -- pytest backend/tests/external_dependency_unit
+```
+
+### Integration Tests
+Standard integration tests. Every test in `backend/tests/integration` runs against a real Onyx deployment. We cannot 
+mock anything in these tests. Prefer writing integration tests (or External Dependency Unit Tests if mocking/internal 
+verification is necessary) over any other type of test.
+
+Tests are parallelized at a directory level.
+
+When writing integration tests, make sure to check the root `conftest.py` for useful fixtures + the `backend/tests/integration/common_utils` directory for utilities. Prefer (if one exists), calling the appropriate Manager 
+class in the utils over directly calling the APIs with a library like `requests`. Prefer using fixtures rather than
+calling the utilities directly (e.g. do NOT create admin users with 
+`admin_user = UserManager.create(name="admin_user")`, instead use the `admin_user` fixture).
+
+A great example of this type of test is `backend/tests/integration/dev_apis/test_simple_chat_api.py`.
+
+To run them:
+
+```bash
+python -m dotenv -f .vscode/.env run -- pytest backend/tests/integration
+```
+
+### Playwright (E2E) Tests
+These tests are an even more complete version of the Integration Tests mentioned above. Has all services of Onyx 
+running, *including* the Web Server.
+
+Use these tests for anything that requires significant frontend <-> backend coordination.
+
+Tests are located at `web/tests/e2e`. Tests are written in TypeScript.
+
+To run them:
+
+```bash
+npx playwright test <TEST_NAME>
+```
+
+
+## Logs
+
+When (1) writing integration tests or (2) doing live tests (e.g. curl / playwright) you can get access
+to logs via the `backend/log/<service_name>_debug.log` file. All Onyx services (api_server, web_server, celery_X)
+will be tailing their logs to this file. 
+
+
+## Security Considerations
+
+- Never commit API keys or secrets to repository
+- Use encrypted credential storage for connector credentials
+- Follow RBAC patterns for new features
+- Implement proper input validation with Pydantic models
+- Use parameterized queries to prevent SQL injection
+
+## AI/LLM Integration
+
+- Multiple LLM providers supported via LiteLLM
+- Configurable models per feature (chat, search, embeddings)
+- Streaming support for real-time responses
+- Token management and rate limiting
+- Custom prompts and agent actions
+
+## UI/UX Patterns
+
+- Tailwind CSS with design system in `web/src/components/ui/`
+- Radix UI and Headless UI for accessible components
+- SWR for data fetching and caching
+- Form validation with react-hook-form
+- Error handling with popup notifications
+
+## Creating a Plan
+When creating a plan in the `plans` directory, make sure to include at least these elements:
+
+**Issues to Address**
+What the change is meant to do.
+
+**Important Notes**
+Things you come across in your research that are important to the implementation.
+
+**Implementation strategy**
+How you are going to make the changes happen. High level approach.
+
+**Tests**
+What unit (use rarely), external dependency unit, integration, and playwright tests you plan to write to 
+verify the correct behavior. Don't overtest. Usually, a given change only needs one type of test.
+
+Do NOT include these: *Timeline*, *Rollback plan*
+
+This is a minimal list - feel free to include more. Do NOT write code as part of your plan.
+Keep it high level. You can reference certain files or functions though.
+
+Before writing your plan, make sure to do research. Explore the relevant sections in the codebase.

CONTRIBUTING.md

@@ -1,168 +1,287 @@
-# Contributing to Danswer
-Hey there! We are so excited that you're interested in Danswer.
+<!-- ONYX_METADATA={"link": "https://github.com/onyx-dot-app/onyx/blob/main/CONTRIBUTING.md"} -->
+
+# Contributing to Onyx
+
+Hey there! We are so excited that you're interested in Onyx.
 
 As an open source project in a rapidly changing space, we welcome all contributions.
 
-
 ## 💃 Guidelines
+
 ### Contribution Opportunities
-The [GitHub issues](https://github.com/danswer-ai/danswer/issues) page is a great place to start for contribution ideas.
+
+The [GitHub Issues](https://github.com/onyx-dot-app/onyx/issues) page is a great place to start for contribution ideas.
+
+To ensure that your contribution is aligned with the project's direction, please reach out to any maintainer on the Onyx team
+via [Discord](https://discord.gg/4NA5SbzrWb) or [email](mailto:hello@onyx.app).
 
 Issues that have been explicitly approved by the maintainers (aligned with the direction of the project)
 will be marked with the `approved by maintainers` label.
 Issues marked `good first issue` are an especially great place to start.
 
 **Connectors** to other tools are another great place to contribute. For details on how, refer to this
-[README.md](https://github.com/danswer-ai/danswer/blob/main/backend/danswer/connectors/README.md).
+[README.md](https://github.com/onyx-dot-app/onyx/blob/main/backend/onyx/connectors/README.md).
 
 If you have a new/different contribution in mind, we'd love to hear about it!
-Your input is vital to making sure that Danswer moves in the right direction.
+Your input is vital to making sure that Onyx moves in the right direction.
 Before starting on implementation, please raise a GitHub issue.
 
-And always feel free to message us (Chris Weaver / Yuhong Sun) on Slack / Discord directly about anything at all. 
-
+Also, always feel free to message the founders (Chris Weaver / Yuhong Sun) on
+[Discord](https://discord.gg/4NA5SbzrWb) directly about anything at all.
 
 ### Contributing Code
+
 To contribute to this project, please follow the
 ["fork and pull request"](https://docs.github.com/en/get-started/quickstart/contributing-to-projects) workflow.
 When opening a pull request, mention related issues and feel free to tag relevant maintainers.
 
 Before creating a pull request please make sure that the new changes conform to the formatting and linting requirements.
-See the [Formatting and Linting](#-formatting-and-linting) section for how to run these checks locally.
-
+See the [Formatting and Linting](#formatting-and-linting) section for how to run these checks locally.
 
 ### Getting Help 🙋
+
 Our goal is to make contributing as easy as possible. If you run into any issues please don't hesitate to reach out.
 That way we can help future contributors and users can avoid the same issue.
 
 We also have support channels and generally interesting discussions on our
-[Slack](https://join.slack.com/t/danswer/shared_invite/zt-1u3h3ke3b-VGh1idW19R8oiNRiKBYv2w)
-and 
-[Discord](https://discord.gg/TDJ59cGV2X).
+[Discord](https://discord.gg/4NA5SbzrWb).
 
 We would love to see you there!
 
-
 ## Get Started 🚀
-Danswer being a fully functional app, relies on several external pieces of software, specifically:
-- Postgres
-- Vector DB ([Qdrant](https://github.com/qdrant/qdrant))
-- Search Engine ([Typesense](https://github.com/typesense/typesense))
 
-This guide provides instructions to set up the Danswer specific services outside of Docker because it's easier for
-development purposes but also feel free to just use the containers and update with local changes by providing the
-`--build` flag.
+Onyx being a fully functional app, relies on some external software, specifically:
 
+- [Postgres](https://www.postgresql.org/) (Relational DB)
+- [Vespa](https://vespa.ai/) (Vector DB/Search Engine)
+- [Redis](https://redis.io/) (Cache)
+- [MinIO](https://min.io/) (File Store)
+- [Nginx](https://nginx.org/) (Not needed for development flows generally)
+
+> **Note:**
+> This guide provides instructions to build and run Onyx locally from source with Docker containers providing the above external software. We believe this combination is easier for
+> development purposes. If you prefer to use pre-built container images, we provide instructions on running the full Onyx stack within Docker below.
 
 ### Local Set Up
-We've tested primarily with Python versions >= 3.11 but the code should work with Python >= 3.9.
 
-This guide skips a few optional features for simplicity, reach out if you need any of these:
-- User Authentication feature
-- File Connector background job
+Be sure to use Python version 3.11. For instructions on installing Python 3.11 on macOS, refer to the [CONTRIBUTING_MACOS.md](./CONTRIBUTING_MACOS.md) readme.
 
+If using a lower version, modifications will have to be made to the code.
+If using a higher version, sometimes some libraries will not be available (i.e. we had problems with Tensorflow in the past with higher versions of python).
+
+#### Backend: Python requirements
 
-#### Installing Requirements
 Currently, we use pip and recommend creating a virtual environment.
 
 For convenience here's a command for it:
+
 ```bash
 python -m venv .venv
 source .venv/bin/activate
 ```
 
+_For Windows, activate the virtual environment using Command Prompt:_
+
+```bash
+.venv\Scripts\activate
+```
+
+If using PowerShell, the command slightly differs:
+
+```powershell
+.venv\Scripts\Activate.ps1
+```
+
 Install the required python dependencies:
+
 ```bash
-pip install -r danswer/backend/requirements/default.txt
-pip install -r danswer/backend/requirements/dev.txt
+pip install -r backend/requirements/combined.txt
 ```
 
-Install [Node.js and npm](https://docs.npmjs.com/downloading-and-installing-node-js-and-npm) for the frontend.
-Once the above is done, navigate to `danswer/web` run:
+or
+
 ```bash
-npm i
+pip install -r backend/requirements/default.txt
+pip install -r backend/requirements/dev.txt
+pip install -r backend/requirements/ee.txt
+pip install -r backend/requirements/model_server.txt
 ```
 
-Install Playwright (required by the Web Connector)
+Fix vscode/cursor auto-imports:
+```bash
+pip install -e .
+```
+
+Install Playwright for Python (headless browser required by the Web Connector)
+
+In the activated Python virtualenv, install Playwright for Python by running:
+
 ```bash
 playwright install
 ```
 
+You may have to deactivate and reactivate your virtualenv for `playwright` to appear on your path.
 
-#### Dependent Docker Containers
-First navigate to `danswer/deployment/docker_compose`, then start up the containers with:
+#### Frontend: Node dependencies
+
+Onyx uses Node v22.20.0. We highly recommend you use [Node Version Manager (nvm)](https://github.com/nvm-sh/nvm)
+to manage your Node installations. Once installed, you can run
 
-Postgres:
 ```bash
-docker compose -f docker-compose.dev.yml -p danswer-stack up -d relational_db
+nvm install 22 && nvm use 22
+node -v # verify your active version
+``` 
+
+Navigate to `onyx/web` and run:
+
+```bash
+npm i
 ```
 
-Qdrant:
-```bash
-docker compose -f docker-compose.dev.yml -p danswer-stack up -d vector_db
-```
+## Formatting and Linting
 
-Typesense:
-```bash
-docker compose -f docker-compose.dev.yml -p danswer-stack up -d search_engine
-```
+### Backend
 
-
-#### Running Danswer
-
-Setup a folder to store config. Navigate to `danswer/backend` and run:
-```bash
-mkdir dynamic_config_storage
-```
-
-To start the frontend, navigate to `danswer/web` and run:
-```bash
-DISABLE_AUTH=true npm run dev
-```
-
-The first time running Danswer, you will need to run the migrations. Navigate to `danswer/backend` and run:
-```bash
-alembic upgrade head
-```
-
-To run the backend API server, navigate to `danswer/backend` and run:
-```bash
-DISABLE_AUTH=True TYPESENSE_API_KEY=local_dev_typesense DYNAMIC_CONFIG_DIR_PATH=./dynamic_config_storage uvicorn danswer.main:app --reload --port 8080
-```
-
-To run the background job to check for connector updates and index documents, navigate to `danswer/backend` and run:
-```bash
-PYTHONPATH=. TYPESENSE_API_KEY=local_dev_typesense DYNAMIC_CONFIG_DIR_PATH=./dynamic_config_storage python danswer/background/update.py
-```
-
-Note: if you need finer logging, add the additional environment variable `LOG_LEVEL=DEBUG` to the relevant services.
-
-### Formatting and Linting
-#### Backend
 For the backend, you'll need to setup pre-commit hooks (black / reorder-python-imports).
-First, install pre-commit (if you don't have it already) following the instructions
-[here](https://pre-commit.com/#installation).
-Then, from the `danswer/backend` directory, run:
+
+With the virtual environment active, install the pre-commit library with:
+
+```bash
+pip install pre-commit
+```
+
+Then, from the `onyx/backend` directory, run:
+
 ```bash
 pre-commit install
 ```
 
 Additionally, we use `mypy` for static type checking.
-Danswer is fully type-annotated, and we would like to keep it that way! 
-Right now, there is no automated type checking at the moment (coming soon), but we ask you to manually run it before
-creating a pull requests with `python -m mypy .` from the `danswer/backend` directory.
+Onyx is fully type-annotated, and we want to keep it that way!
+To run the mypy checks manually, run `python -m mypy .` from the `onyx/backend` directory.
 
+### Web
 
-#### Web
-We use `prettier` for formatting. The desired version (2.8.8) will be installed via a `npm i` from the `danswer/web` directory. 
-To run the formatter, use `npx prettier --write .` from the `danswer/web` directory.
-Like `mypy`, we have no automated formatting yet (coming soon), but we request that, for now,
-you run this manually before creating a pull request.
+We use `prettier` for formatting. The desired version will be installed via a `npm i` from the `onyx/web` directory.
+To run the formatter, use `npx prettier --write .` from the `onyx/web` directory.
+
+Pre-commit will also run prettier automatically on files you've recently touched. If re-formatted, your commit will fail.
+Re-stage your changes and commit again.
+
+# Running the application for development
+
+## Developing using VSCode Debugger (recommended)
+
+**We highly recommend using VSCode debugger for development.**
+See [CONTRIBUTING_VSCODE.md](./CONTRIBUTING_VSCODE.md) for more details.
+
+Otherwise, you can follow the instructions below to run the application for development.
+
+## Manually running the application for development
+### Docker containers for external software
+
+You will need Docker installed to run these containers.
+
+First navigate to `onyx/deployment/docker_compose`, then start up Postgres/Vespa/Redis/MinIO with:
+
+```bash
+docker compose up -d index relational_db cache minio
+```
+
+(index refers to Vespa, relational_db refers to Postgres, and cache refers to Redis)
+
+### Running Onyx locally
+
+To start the frontend, navigate to `onyx/web` and run:
+
+```bash
+npm run dev
+```
+
+Next, start the model server which runs the local NLP models.
+Navigate to `onyx/backend` and run:
+
+```bash
+uvicorn model_server.main:app --reload --port 9000
+```
+
+_For Windows (for compatibility with both PowerShell and Command Prompt):_
+
+```bash
+powershell -Command "uvicorn model_server.main:app --reload --port 9000"
+```
+
+The first time running Onyx, you will need to run the DB migrations for Postgres.
+After the first time, this is no longer required unless the DB models change.
+
+Navigate to `onyx/backend` and with the venv active, run:
+
+```bash
+alembic upgrade head
+```
+
+Next, start the task queue which orchestrates the background jobs.
+Jobs that take more time are run async from the API server.
+
+Still in `onyx/backend`, run:
+
+```bash
+python ./scripts/dev_run_background_jobs.py
+```
+
+To run the backend API server, navigate back to `onyx/backend` and run:
+
+```bash
+AUTH_TYPE=disabled uvicorn onyx.main:app --reload --port 8080
+```
+
+_For Windows (for compatibility with both PowerShell and Command Prompt):_
+
+```bash
+powershell -Command "
+    $env:AUTH_TYPE='disabled'
+    uvicorn onyx.main:app --reload --port 8080
+"
+```
+
+> **Note:**
+> If you need finer logging, add the additional environment variable `LOG_LEVEL=DEBUG` to the relevant services.
+
+#### Wrapping up
+
+You should now have 4 servers running:
+
+- Web server
+- Backend API
+- Model server
+- Background jobs
+
+Now, visit `http://localhost:3000` in your browser. You should see the Onyx onboarding wizard where you can connect your external LLM provider to Onyx.
+
+You've successfully set up a local Onyx instance! 🏁
+
+#### Running the Onyx application in a container
+
+You can run the full Onyx application stack from pre-built images including all external software dependencies.
+
+Navigate to `onyx/deployment/docker_compose` and run:
+
+```bash
+docker compose up -d
+```
+
+After Docker pulls and starts these containers, navigate to `http://localhost:3000` to use Onyx.
+
+If you want to make changes to Onyx and run those changes in Docker, you can also build a local version of the Onyx container images that incorporates your changes like so:
+
+```bash
+docker compose up -d --build
+```
 
 
 ### Release Process
-Danswer follows the semver versioning standard.
-A set of Docker containers will be pushed automatically to DockerHub with every tag.
-You can see the containers [here](https://hub.docker.com/search?q=danswer%2F).
 
-As pre-1.0 software, even patch releases may contain breaking or non-backwards-compatible changes.
+Onyx loosely follows the SemVer versioning standard.
+Major changes are released with a "minor" version bump. Currently we use patch release versions to indicate small feature changes.
+A set of Docker containers will be pushed automatically to DockerHub with every tag.
+You can see the containers [here](https://hub.docker.com/search?q=onyx%2F).

CONTRIBUTING_MACOS.md

@@ -0,0 +1,36 @@
+## Some additional notes for Mac Users
+
+The base instructions to set up the development environment are located in [CONTRIBUTING.md](https://github.com/onyx-dot-app/onyx/blob/main/CONTRIBUTING.md).
+
+### Setting up Python
+
+Ensure [Homebrew](https://brew.sh/) is already set up.
+
+Then install python 3.11.
+
+```bash
+brew install python@3.11
+```
+
+Add python 3.11 to your path: add the following line to ~/.zshrc
+
+```
+export PATH="$(brew --prefix)/opt/python@3.11/libexec/bin:$PATH"
+```
+
+> **Note:**
+> You will need to open a new terminal for the path change above to take effect.
+
+### Setting up Docker
+
+On macOS, you will need to install [Docker Desktop](https://www.docker.com/products/docker-desktop/) and
+ensure it is running before continuing with the docker commands.
+
+### Formatting and Linting
+
+MacOS will likely require you to remove some quarantine attributes on some of the hooks for them to execute properly.
+After installing pre-commit, run the following command:
+
+```bash
+sudo xattr -r -d com.apple.quarantine ~/.cache/pre-commit
+```

CONTRIBUTING_VSCODE.md

@@ -0,0 +1,32 @@
+# VSCode Debugging Setup
+
+This guide explains how to set up and use VSCode's debugging capabilities with this project.
+
+## Initial Setup
+
+1. **Environment Setup**:
+   - Copy `.vscode/env_template.txt` to `.vscode/.env`
+   - Fill in the necessary environment variables in `.vscode/.env`
+2. **launch.json**:
+   - Copy `.vscode/launch.template.jsonc` to `.vscode/launch.json`
+
+## Using the Debugger
+
+Before starting, make sure the Docker Daemon is running.
+
+1. Open the Debug view in VSCode (Cmd+Shift+D on macOS)
+2. From the dropdown at the top, select "Clear and Restart External Volumes and Containers" and press the green play button
+3. From the dropdown at the top, select "Run All Onyx Services" and press the green play button
+4. Now, you can navigate to onyx in your browser (default is http://localhost:3000) and start using the app
+5. You can set breakpoints by clicking to the left of line numbers to help debug while the app is running
+6. Use the debug toolbar to step through code, inspect variables, etc.
+
+Note: Clear and Restart External Volumes and Containers will reset your postgres and Vespa (relational-db and index).
+Only run this if you are okay with wiping your data.
+
+## Features
+
+- Hot reload is enabled for the web server and API servers
+- Python debugging is configured with debugpy
+- Environment variables are loaded from `.vscode/.env`
+- Console output is organized in the integrated terminal with labeled tabs

LICENSE

@@ -1,6 +1,10 @@
-MIT License
+Copyright (c) 2023-present DanswerAI, Inc.
 
-Copyright (c) 2023 Yuhong Sun, Chris Weaver
+Portions of this software are licensed as follows:
+
+- All content that resides under "ee" directories of this repository, if that directory exists, is licensed under the license defined in "backend/ee/LICENSE". Specifically all content under "backend/ee" and "web/src/app/ee" is licensed under the license defined in "backend/ee/LICENSE".
+- All third party components incorporated into the Onyx Software are licensed under the original license provided by the owner of the applicable component.
+- Content outside of the above mentioned directories or restrictions above is available under the "MIT Expat" license as defined below.
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

README.md

@@ -1,44 +1,103 @@
+<a name="readme-top"></a>
+
 <h2 align="center">
-<a href="https://www.danswer.ai/"> <img width="50%" src="https://github.com/danswer-owners/danswer/blob/1fabd9372d66cd54238847197c33f091a724803b/DanswerWithName.png?raw=true)" /></a>
+    <a href="https://www.onyx.app/"> <img width="50%" src="https://github.com/onyx-dot-app/onyx/blob/logo/OnyxLogoCropped.jpg?raw=true)" /></a>
 </h2>
 
-<p align="center">
-<p align="center">OpenSource Enterprise Question-Answering</p>
+<p align="center">Open Source AI Platform</p>
 
 <p align="center">
-<a href="https://docs.danswer.dev/" target="_blank">
-    <img src="https://img.shields.io/badge/docs-view-blue" alt="Documentation">
-</a>
-<a href="https://join.slack.com/t/danswer/shared_invite/zt-1u5ycen3o-6SJbWfivLWP5LPyp_jftuw" target="_blank">
-    <img src="https://img.shields.io/badge/slack-join-blue.svg?logo=slack" alt="Slack">
-</a>
-<a href="https://discord.gg/TDJ59cGV2X" target="_blank">
-    <img src="https://img.shields.io/badge/discord-join-blue.svg?logo=discord&logoColor=white" alt="Discord">
-</a>
-<a href="https://github.com/danswer-ai/danswer/blob/main/README.md" target="_blank">
-    <img src="https://img.shields.io/static/v1?label=license&message=MIT&color=blue" alt="License">
-</a>
+    <a href="https://discord.gg/TDJ59cGV2X" target="_blank">
+        <img src="https://img.shields.io/badge/discord-join-blue.svg?logo=discord&logoColor=white" alt="Discord">
+    </a>
+    <a href="https://docs.onyx.app/" target="_blank">
+        <img src="https://img.shields.io/badge/docs-view-blue" alt="Documentation">
+    </a>
+    <a href="https://docs.onyx.app/" target="_blank">
+        <img src="https://img.shields.io/website?url=https://www.onyx.app&up_message=visit&up_color=blue" alt="Documentation">
+    </a>
+    <a href="https://github.com/onyx-dot-app/onyx/blob/main/LICENSE" target="_blank">
+        <img src="https://img.shields.io/static/v1?label=license&message=MIT&color=blue" alt="License">
+    </a>
 </p>
 
-<strong>[Danswer](https://www.danswer.ai/)</strong> allows you to ask natural language questions against internal documents and get back reliable answers backed by quotes and references from the source material so that you can always trust what you get back. You can connect to a number of common tools such as Slack, GitHub, Confluence, amongst others.
-
-Check out our <strong><a href="https://www.youtube.com/watch?v=geNzY1nbCnU">Video Demo</a></strong>!
 
 
-## Features 💃
-* Direct QA powered by Generative AI models with answers backed by quotes and source links.
-* Intelligent Document Retrieval (Semantic Search/Reranking) using the latest LLMs.
-* An AI Helper backed by a custom Deep Learning model to interpret user intent.
-* User authentication and document level access management.
-* Connectors to Slack, GitHub, GoogleDrive, Confluence, local files, and web scraping, with more to come.
-* Management Dashboard to manage connectors and set up features such as live update fetching.
-* One line Docker Compose (or Kubernetes) deployment to host Danswer anywhere.
+**[Onyx](https://www.onyx.app/)** is a feature-rich, self-hostable Chat UI that works with any LLM. It is easy to deploy and can run in a completely airgapped environment.
+
+Onyx comes loaded with advanced features like Agents, Web Search, RAG, MCP, Deep Research, Connectors to 40+ knowledge sources, and more.
+
+> [!TIP]
+> Run Onyx with one command (or see deployment section below):
+> ```
+> curl -fsSL https://raw.githubusercontent.com/onyx-dot-app/onyx/main/deployment/docker_compose/install.sh > install.sh && chmod +x install.sh && ./install.sh
+> ```
+
+****
+
+![Onyx Chat Silent Demo](https://github.com/onyx-dot-app/onyx/releases/download/v0.21.1/OnyxChatSilentDemo.gif)
+
+
+
+## ⭐ Features
+- **🤖 Custom Agents:** Build AI Agents with unique instructions, knowledge and actions.
+- **🌍 Web Search:** Browse the web with Google PSE, Exa, and Serper as well as an in-house scraper or Firecrawl.
+- **🔍 RAG:** Best in class hybrid-search + knowledge graph for uploaded files and ingested documents from connectors. 
+- **🔄 Connectors:** Pull knowledge, metadata, and access information from over 40 applications.
+- **🔬 Deep Research:** Get in depth answers with an agentic multi-step search.
+- **▶️ Actions & MCP:** Give AI Agents the ability to interact with external systems.
+- **💻 Code Interpreter:** Execute code to analyze data, render graphs and create files.
+- **🎨 Image Generation:** Generate images based on user prompts.
+- **👥 Collaboration:** Chat sharing, feedback gathering, user management, usage analytics, and more.
+
+Onyx works with all LLMs (like OpenAI, Anthropic, Gemini, etc.) and self-hosted LLMs (like Ollama, vLLM, etc.)
+
+To learn more about the features, check out our [documentation](https://docs.onyx.app/welcome)!
+
+
+
+## 🚀 Deployment
+Onyx supports deployments in Docker, Kubernetes, Terraform, along with guides for major cloud providers.
+
+See guides below:
+- [Docker](https://docs.onyx.app/deployment/local/docker) or [Quickstart](https://docs.onyx.app/deployment/getting_started/quickstart) (best for most users)
+- [Kubernetes](https://docs.onyx.app/deployment/local/kubernetes) (best for large teams)
+- [Terraform](https://docs.onyx.app/deployment/local/terraform) (best for teams already using Terraform)
+- Cloud specific guides (best if specifically using [AWS EKS](https://docs.onyx.app/deployment/cloud/aws/eks), [Azure VMs](https://docs.onyx.app/deployment/cloud/azure), etc.)
+
+> [!TIP]  
+> **To try Onyx for free without deploying, check out [Onyx Cloud](https://cloud.onyx.app/signup)**.
+
+
+
+## 🔍 Other Notable Benefits
+Onyx is built for teams of all sizes, from individual users to the largest global enterprises.
+
+- **Enterprise Search**: far more than simple RAG, Onyx has custom indexing and retrieval that remains performant and accurate for scales of up to tens of millions of documents.
+- **Security**: SSO (OIDC/SAML/OAuth2), RBAC, encryption of credentials, etc.
+- **Management UI**: different user roles such as basic, curator, and admin.
+- **Document Permissioning**: mirrors user access from external apps for RAG use cases.
+
+
+
+## 🚧 Roadmap
+To see ongoing and upcoming projects, check out our [roadmap](https://github.com/orgs/onyx-dot-app/projects/2)!
+
+
+
+## 📚 Licensing
+There are two editions of Onyx:
+
+- Onyx Community Edition (CE) is available freely under the MIT license.
+- Onyx Enterprise Edition (EE) includes extra features that are primarily useful for larger organizations.
+For feature details, check out [our website](https://www.onyx.app/pricing).
+
+
+
+## 👪 Community
+Join our open source community on **[Discord](https://discord.gg/TDJ59cGV2X)**!
+
 
-## Upcoming
-* Chat/Conversation support.
-* Support custom endpoints for Generative AI models or even self-host options.
-* Templates to easily build custom connectors.
-* Personalized search
 
 ## 💡 Contributing
 Looking to contribute? Please check out the [Contribution Guide](CONTRIBUTING.md) for more details.

backend/.dockerignore

@@ -0,0 +1,17 @@
+**/__pycache__
+venv/
+env/
+*.egg-info
+.cache
+.git/
+.svn/
+.vscode/
+.idea/
+*.log
+log/
+.env
+secrets.yaml
+build/
+dist/
+.coverage
+htmlcov/

backend/.gitignore

@@ -1,8 +1,14 @@
 __pycache__/
+.mypy_cache
 .idea/
 site_crawls/
 .ipynb_checkpoints/
 api_keys.py
 *ipynb
-qdrant-data/
-typesense-data/
+.env*
+vespa-app.zip
+dynamic_config_storage/
+celerybeat-schedule*
+onyx/connectors/salesforce/data/
+.test.env
+/generated

backend/.pre-commit-config.yaml

@@ -1,12 +0,0 @@
-repos:
--   repo: https://github.com/psf/black
-    rev: 23.3.0
-    hooks:
-    - id: black
-      language_version: python3.11
-
--   repo: https://github.com/asottile/reorder_python_imports
-    rev: v3.9.0
-    hooks:
-    - id: reorder-python-imports
-      args: ['--py311-plus']

backend/.trivyignore

@@ -0,0 +1,46 @@
+# https://github.com/madler/zlib/issues/868
+# Pulled in with base Debian image, it's part of the contrib folder but unused
+# zlib1g is fine
+# Will be gone with Debian image upgrade
+# No impact in our settings
+CVE-2023-45853
+
+# krb5 related, worst case is denial of service by resource exhaustion
+# Accept the risk
+CVE-2024-26458
+CVE-2024-26461
+CVE-2024-26462
+CVE-2024-26458
+CVE-2024-26461
+CVE-2024-26462
+CVE-2024-26458
+CVE-2024-26461
+CVE-2024-26462
+CVE-2024-26458
+CVE-2024-26461
+CVE-2024-26462
+
+# Specific to Firefox which we do not use
+# No impact in our settings
+CVE-2024-0743
+
+# bind9 related, worst case is denial of service by CPU resource exhaustion
+# Accept the risk
+CVE-2023-50387
+CVE-2023-50868
+CVE-2023-50387
+CVE-2023-50868
+
+# libexpat1, XML parsing resource exhaustion
+# We don't parse any user provided XMLs
+# No impact in our settings
+CVE-2023-52425
+CVE-2024-28757
+
+# sqlite, only used by NLTK library to grab word lemmatizer and stopwords
+# No impact in our settings
+CVE-2023-7104
+
+# libharfbuzz0b, O(n^2) growth, worst case is denial of service
+# Accept the risk
+CVE-2023-25193

backend/Dockerfile

@@ -1,23 +1,133 @@
-FROM python:3.11-slim-bullseye
+FROM python:3.11.7-slim-bookworm
 
-RUN apt-get update \
-    && apt-get install -y git cmake pkg-config libprotobuf-c-dev protobuf-compiler \
-       libprotobuf-dev libgoogle-perftools-dev libpq-dev build-essential cron curl \
-       supervisor \
-    && rm -rf /var/lib/apt/lists/*
+LABEL com.danswer.maintainer="founders@onyx.app"
+LABEL com.danswer.description="This image is the web/frontend container of Onyx which \
+contains code for both the Community and Enterprise editions of Onyx. If you do not \
+have a contract or agreement with DanswerAI, you are not permitted to use the Enterprise \
+Edition features outside of personal development or testing purposes. Please reach out to \
+founders@onyx.app for more information. Please visit https://github.com/onyx-dot-app/onyx"
 
+# Default ONYX_VERSION, typically overriden during builds by GitHub Actions.
+ARG ONYX_VERSION=0.0.0-dev
+# DO_NOT_TRACK is used to disable telemetry for Unstructured
+ENV ONYX_VERSION=${ONYX_VERSION} \
+    DANSWER_RUNNING_IN_DOCKER="true" \
+    DO_NOT_TRACK="true" \
+    PLAYWRIGHT_BROWSERS_PATH="/app/.cache/ms-playwright"
+
+COPY --from=ghcr.io/astral-sh/uv:latest /uv /uvx /bin/
+
+# Install system dependencies
+# cmake needed for psycopg (postgres)
+# libpq-dev needed for psycopg (postgres)
+# curl included just for users' convenience
+# zip for Vespa step futher down
+# ca-certificates for HTTPS
+RUN apt-get update && \
+    apt-get install -y \
+        cmake \
+        curl \
+        zip \
+        ca-certificates \
+        libgnutls30 \
+        libblkid1 \
+        libmount1 \
+        libsmartcols1 \
+        libuuid1 \
+        libxmlsec1-dev \
+        pkg-config \
+        gcc \
+        nano \
+        vim && \
+    rm -rf /var/lib/apt/lists/* && \
+    apt-get clean
+
+
+
+# Install Python dependencies
+# Remove py which is pulled in by retry, py is not needed and is a CVE
 COPY ./requirements/default.txt /tmp/requirements.txt
-RUN pip install --no-cache-dir --upgrade -r /tmp/requirements.txt
-RUN playwright install
-RUN playwright install-deps
+COPY ./requirements/ee.txt /tmp/ee-requirements.txt
+RUN uv pip install --system --no-cache-dir --upgrade \
+        -r /tmp/requirements.txt \
+        -r /tmp/ee-requirements.txt && \
+    pip uninstall -y py && \
+    playwright install chromium && \
+    playwright install-deps chromium && \
+    ln -s /usr/local/bin/supervisord /usr/bin/supervisord && \
+    # Cleanup for CVEs and size reduction
+    # https://github.com/tornadoweb/tornado/issues/3107
+    # xserver-common and xvfb included by playwright installation but not needed after
+    # perl-base is part of the base Python Debian image but not needed for Onyx functionality
+    # perl-base could only be removed with --allow-remove-essential
+    apt-get update && \
+    apt-get remove -y --allow-remove-essential \
+        perl-base \
+        xserver-common \
+        xvfb \
+        cmake \
+        libldap-2.5-0 \
+        libxmlsec1-dev \
+        pkg-config \
+        gcc && \
+    # Install here to avoid some packages being cleaned up above
+    apt-get install -y \
+        libxmlsec1-openssl \
+        # Install postgresql-client for easy manual tests
+        postgresql-client && \
+    apt-get autoremove -y && \
+    rm -rf /var/lib/apt/lists/* && \
+    rm -rf ~/.cache/uv /tmp/*.txt && \
+    rm -f /usr/local/lib/python3.11/site-packages/tornado/test/test.key
 
+# Pre-downloading models for setups with limited egress
+RUN python -c "from tokenizers import Tokenizer; \
+Tokenizer.from_pretrained('nomic-ai/nomic-embed-text-v1')"
+
+# Pre-downloading NLTK for setups with limited egress
+RUN python -c "import nltk; \
+nltk.download('stopwords', quiet=True); \
+nltk.download('punkt_tab', quiet=True);"
+# nltk.download('wordnet', quiet=True); introduce this back if lemmatization is needed
+
+# Pre-downloading tiktoken for setups with limited egress
+RUN python -c "import tiktoken; \
+tiktoken.get_encoding('cl100k_base')"
+
+# Set up application files
 WORKDIR /app
-COPY ./danswer /app/danswer
-COPY ./alembic /app/alembic
-COPY ./alembic.ini /app/alembic.ini
+
+# Create non-root user for security best practices
+RUN groupadd -g 1001 onyx && \
+    useradd -u 1001 -g onyx -m -s /bin/bash onyx && \
+    mkdir -p /var/log/onyx && \
+    chmod 755 /var/log/onyx && \
+    chown onyx:onyx /var/log/onyx
+
+# Enterprise Version Files
+COPY --chown=onyx:onyx ./ee /app/ee
 COPY supervisord.conf /etc/supervisor/conf.d/supervisord.conf
 
-ENV PYTHONPATH /app
+# Set up application files
+COPY --chown=onyx:onyx ./onyx /app/onyx
+COPY --chown=onyx:onyx ./shared_configs /app/shared_configs
+COPY --chown=onyx:onyx ./alembic /app/alembic
+COPY --chown=onyx:onyx ./alembic_tenants /app/alembic_tenants
+COPY --chown=onyx:onyx ./alembic.ini /app/alembic.ini
+COPY supervisord.conf /usr/etc/supervisord.conf
+COPY --chown=onyx:onyx ./static /app/static
 
-# By default this container does nothing, it is used by api server and background which specify their own CMD
+# Escape hatch scripts
+COPY --chown=onyx:onyx ./scripts/debugging /app/scripts/debugging
+COPY --chown=onyx:onyx ./scripts/force_delete_connector_by_id.py /app/scripts/force_delete_connector_by_id.py
+COPY --chown=onyx:onyx ./scripts/supervisord_entrypoint.sh /app/scripts/supervisord_entrypoint.sh
+RUN chmod +x /app/scripts/supervisord_entrypoint.sh
+
+# Put logo in assets
+COPY --chown=onyx:onyx ./assets /app/assets
+
+ENV PYTHONPATH=/app
+
+# Default command which does nothing
+# This container is used by api server and background which specify their own CMD
 CMD ["tail", "-f", "/dev/null"]

backend/Dockerfile.model_server

@@ -0,0 +1,86 @@
+FROM python:3.11.7-slim-bookworm
+
+LABEL com.danswer.maintainer="founders@onyx.app"
+LABEL com.danswer.description="This image is for the Onyx model server which runs all of the \
+AI models for Onyx. This container and all the code is MIT Licensed and free for all to use. \
+You can find it at https://hub.docker.com/r/onyx/onyx-model-server. For more details, \
+visit https://github.com/onyx-dot-app/onyx."
+
+# Default ONYX_VERSION, typically overriden during builds by GitHub Actions.
+ARG ONYX_VERSION=0.0.0-dev
+ENV ONYX_VERSION=${ONYX_VERSION} \
+    DANSWER_RUNNING_IN_DOCKER="true" \
+    HF_HOME=/app/.cache/huggingface
+
+COPY --from=ghcr.io/astral-sh/uv:latest /uv /uvx /bin/
+
+# Create non-root user for security best practices
+RUN mkdir -p /app && \
+    groupadd -g 1001 onyx && \
+    useradd -u 1001 -g onyx -m -s /bin/bash onyx  && \
+    chown -R onyx:onyx /app && \
+    mkdir -p /var/log/onyx && \
+    chmod 755 /var/log/onyx && \
+    chown onyx:onyx /var/log/onyx
+
+# --- add toolchain needed for Rust/Python builds (fastuuid) ---
+ENV RUSTUP_HOME=/usr/local/rustup \
+    CARGO_HOME=/usr/local/cargo \
+    PATH=/usr/local/cargo/bin:$PATH
+
+RUN set -eux; \
+    apt-get update && apt-get install -y --no-install-recommends \
+        build-essential \
+        pkg-config \
+        curl \
+        ca-certificates \
+    # Install latest stable Rust (supports Cargo.lock v4)
+    && curl -sSf https://sh.rustup.rs | sh -s -- -y --profile minimal --default-toolchain stable \
+    && rustc --version && cargo --version \
+    && apt-get remove -y --allow-remove-essential perl-base \
+    && apt-get autoremove -y \
+    && rm -rf /var/lib/apt/lists/*
+
+COPY ./requirements/model_server.txt /tmp/requirements.txt
+RUN uv pip install --system --no-cache-dir --upgrade \
+        -r /tmp/requirements.txt && \
+    rm -rf ~/.cache/uv /tmp/*.txt
+
+# Pre-downloading models for setups with limited egress
+# Download tokenizers, distilbert for the Onyx model
+# Download model weights
+# Run Nomic to pull in the custom architecture and have it cached locally
+RUN python -c "from transformers import AutoTokenizer; \
+AutoTokenizer.from_pretrained('distilbert-base-uncased'); \
+AutoTokenizer.from_pretrained('mixedbread-ai/mxbai-rerank-xsmall-v1'); \
+from huggingface_hub import snapshot_download; \
+snapshot_download(repo_id='onyx-dot-app/hybrid-intent-token-classifier'); \
+snapshot_download(repo_id='onyx-dot-app/information-content-model'); \
+snapshot_download('nomic-ai/nomic-embed-text-v1'); \
+snapshot_download('mixedbread-ai/mxbai-rerank-xsmall-v1'); \
+from sentence_transformers import SentenceTransformer; \
+SentenceTransformer(model_name_or_path='nomic-ai/nomic-embed-text-v1', trust_remote_code=True);" && \
+    # In case the user has volumes mounted to /app/.cache/huggingface that they've downloaded while
+    # running Onyx, move the current contents of the cache folder to a temporary location to ensure
+    # it's preserved in order to combine with the user's cache contents
+    mv /app/.cache/huggingface /app/.cache/temp_huggingface && \
+    chown -R onyx:onyx /app
+
+WORKDIR /app
+
+# Utils used by model server
+COPY ./onyx/utils/logger.py /app/onyx/utils/logger.py
+COPY ./onyx/utils/middleware.py /app/onyx/utils/middleware.py
+
+# Place to fetch version information
+COPY ./onyx/__init__.py /app/onyx/__init__.py
+
+# Shared between Onyx Backend and Model Server
+COPY ./shared_configs /app/shared_configs
+
+# Model Server main code
+COPY ./model_server /app/model_server
+
+ENV PYTHONPATH=/app
+
+CMD ["uvicorn", "model_server.main:app", "--host", "0.0.0.0", "--port", "9000"]

backend/alembic.ini

@@ -1,6 +1,6 @@
 # A generic, single database configuration.
 
-[alembic]
+[DEFAULT]
 # path to migration scripts
 script_location = alembic
 
@@ -47,7 +47,8 @@ prepend_sys_path = .
 # version_path_separator = :
 # version_path_separator = ;
 # version_path_separator = space
-version_path_separator = os  # Use os.pathsep. Default configuration used for new projects.
+version_path_separator = os  
+# Use os.pathsep. Default configuration used for new projects.
 
 # set to 'true' to search source files recursively
 # in each "version_locations" directory
@@ -83,7 +84,7 @@ keys = console
 keys = generic
 
 [logger_root]
-level = WARN
+level = INFO
 handlers = console
 qualname =
 
@@ -106,3 +107,12 @@ formatter = generic
 [formatter_generic]
 format = %(levelname)-5.5s [%(name)s] %(message)s
 datefmt = %H:%M:%S
+
+
+[alembic]
+script_location = alembic
+version_locations = %(script_location)s/versions
+
+[schema_private]
+script_location = alembic_tenants
+version_locations = %(script_location)s/versions

backend/alembic/README.md

@@ -1,7 +1,13 @@
-Generic single-database configuration with an async dbapi.
+<!-- ONYX_METADATA={"link": "https://github.com/onyx-dot-app/onyx/blob/main/backend/alembic/README.md"} -->
 
-## To generate new migrations: 
-run from danswer/backend:
+# Alembic DB Migrations
+
+These files are for creating/updating the tables in the Relational DB (Postgres).
+Onyx migrations use a generic single-database configuration with an async dbapi.
+
+## To generate new migrations:
+
+run from onyx/backend:
 `alembic revision --autogenerate -m <DESCRIPTION_OF_MIGRATION>`
 
 More info can be found here: https://alembic.sqlalchemy.org/en/latest/autogenerate.html
@@ -12,5 +18,46 @@ To run all un-applied migrations:
 `alembic upgrade head`
 
 To undo migrations:
-`alembic downgrade -X` 
+`alembic downgrade -X`
 where X is the number of migrations you want to undo from the current state
+
+### Multi-tenant migrations
+
+For multi-tenant deployments, you can use additional options:
+
+**Upgrade all tenants:**
+```bash
+alembic -x upgrade_all_tenants=true upgrade head
+```
+
+**Upgrade specific schemas:**
+```bash
+# Single schema
+alembic -x schemas=tenant_12345678-1234-1234-1234-123456789012 upgrade head
+
+# Multiple schemas (comma-separated)
+alembic -x schemas=tenant_12345678-1234-1234-1234-123456789012,public,another_tenant upgrade head
+```
+
+**Upgrade tenants within an alphabetical range:**
+```bash
+# Upgrade tenants 100-200 when sorted alphabetically (positions 100 to 200)
+alembic -x upgrade_all_tenants=true -x tenant_range_start=100 -x tenant_range_end=200 upgrade head
+
+# Upgrade tenants starting from position 1000 alphabetically
+alembic -x upgrade_all_tenants=true -x tenant_range_start=1000 upgrade head
+
+# Upgrade first 500 tenants alphabetically
+alembic -x upgrade_all_tenants=true -x tenant_range_end=500 upgrade head
+```
+
+**Continue on error (for batch operations):**
+```bash
+alembic -x upgrade_all_tenants=true -x continue=true upgrade head
+```
+
+The tenant range filtering works by:
+1. Sorting tenant IDs alphabetically
+2. Using 1-based position numbers (1st, 2nd, 3rd tenant, etc.)
+3. Filtering to the specified range of positions
+4. Non-tenant schemas (like 'public') are always included

backend/alembic/env.py

@@ -1,85 +1,466 @@
+from typing import Any, Literal
+from onyx.db.engine.iam_auth import get_iam_auth_token
+from onyx.configs.app_configs import USE_IAM_AUTH
+from onyx.configs.app_configs import POSTGRES_HOST
+from onyx.configs.app_configs import POSTGRES_PORT
+from onyx.configs.app_configs import POSTGRES_USER
+from onyx.configs.app_configs import AWS_REGION_NAME
+from onyx.db.engine.sql_engine import build_connection_string
+from onyx.db.engine.tenant_utils import get_all_tenant_ids
+from sqlalchemy import event
+from sqlalchemy import pool
+from sqlalchemy import text
+from sqlalchemy.engine.base import Connection
+import os
+import ssl
 import asyncio
+import logging
 from logging.config import fileConfig
 
 from alembic import context
-from danswer.db.engine import build_connection_string
-from danswer.db.models import Base
-from sqlalchemy import pool
-from sqlalchemy.engine import Connection
 from sqlalchemy.ext.asyncio import create_async_engine
+from sqlalchemy.sql.schema import SchemaItem
+from onyx.configs.constants import SSL_CERT_FILE
+from shared_configs.configs import (
+    MULTI_TENANT,
+    POSTGRES_DEFAULT_SCHEMA,
+    TENANT_ID_PREFIX,
+)
+from onyx.db.models import Base
+from celery.backends.database.session import ResultModelBase  # type: ignore
+from onyx.db.engine.sql_engine import SqlEngine
 
-# this is the Alembic Config object, which provides
-# access to the values within the .ini file in use.
+# Make sure in alembic.ini [logger_root] level=INFO is set or most logging will be
+# hidden! (defaults to level=WARN)
+
+# Alembic Config object
 config = context.config
 
-# Interpret the config file for Python logging.
-# This line sets up loggers basically.
-if config.config_file_name is not None:
+if config.config_file_name is not None and config.attributes.get(
+    "configure_logger", True
+):
     fileConfig(config.config_file_name)
 
-# add your model's MetaData object here
-# for 'autogenerate' support
-# from myapp import mymodel
-# target_metadata = mymodel.Base.metadata
-target_metadata = Base.metadata
+target_metadata = [Base.metadata, ResultModelBase.metadata]
 
-# other values from the config, defined by the needs of env.py,
-# can be acquired:
-# my_important_option = config.get_main_option("my_important_option")
-# ... etc.
+EXCLUDE_TABLES = {"kombu_queue", "kombu_message"}
+
+logger = logging.getLogger(__name__)
+
+ssl_context: ssl.SSLContext | None = None
+if USE_IAM_AUTH:
+    if not os.path.exists(SSL_CERT_FILE):
+        raise FileNotFoundError(f"Expected {SSL_CERT_FILE} when USE_IAM_AUTH is true.")
+    ssl_context = ssl.create_default_context(cafile=SSL_CERT_FILE)
 
 
-def run_migrations_offline() -> None:
-    """Run migrations in 'offline' mode.
+def include_object(
+    object: SchemaItem,
+    name: str | None,
+    type_: Literal[
+        "schema",
+        "table",
+        "column",
+        "index",
+        "unique_constraint",
+        "foreign_key_constraint",
+    ],
+    reflected: bool,
+    compare_to: SchemaItem | None,
+) -> bool:
+    if type_ == "table" and name in EXCLUDE_TABLES:
+        return False
+    return True
 
-    This configures the context with just a URL
-    and not an Engine, though an Engine is acceptable
-    here as well.  By skipping the Engine creation
-    we don't even need a DBAPI to be available.
-
-    Calls to context.execute() here emit the given string to the
-    script output.
 
+def filter_tenants_by_range(
+    tenant_ids: list[str], start_range: int | None = None, end_range: int | None = None
+) -> list[str]:
     """
-    url = build_connection_string()
+    Filter tenant IDs by alphabetical position range.
+
+    Args:
+        tenant_ids: List of tenant IDs to filter
+        start_range: Starting position in alphabetically sorted list (1-based, inclusive)
+        end_range: Ending position in alphabetically sorted list (1-based, inclusive)
+
+    Returns:
+        Filtered list of tenant IDs in their original order
+    """
+    if start_range is None and end_range is None:
+        return tenant_ids
+
+    # Separate tenant IDs from non-tenant schemas
+    tenant_schemas = [tid for tid in tenant_ids if tid.startswith(TENANT_ID_PREFIX)]
+    non_tenant_schemas = [
+        tid for tid in tenant_ids if not tid.startswith(TENANT_ID_PREFIX)
+    ]
+
+    # Sort tenant schemas alphabetically.
+    # NOTE: can cause missed schemas if a schema is created in between workers
+    # fetching of all tenant IDs. We accept this risk for now. Just re-running
+    # the migration will fix the issue.
+    sorted_tenant_schemas = sorted(tenant_schemas)
+
+    # Apply range filtering (0-based indexing)
+    start_idx = start_range if start_range is not None else 0
+    end_idx = end_range if end_range is not None else len(sorted_tenant_schemas)
+
+    # Ensure indices are within bounds
+    start_idx = max(0, start_idx)
+    end_idx = min(len(sorted_tenant_schemas), end_idx)
+
+    # Get the filtered tenant schemas
+    filtered_tenant_schemas = sorted_tenant_schemas[start_idx:end_idx]
+
+    # Combine with non-tenant schemas and preserve original order
+    filtered_tenants = []
+    for tenant_id in tenant_ids:
+        if tenant_id in filtered_tenant_schemas or tenant_id in non_tenant_schemas:
+            filtered_tenants.append(tenant_id)
+
+    return filtered_tenants
+
+
+def get_schema_options() -> (
+    tuple[bool, bool, bool, int | None, int | None, list[str] | None]
+):
+    x_args_raw = context.get_x_argument()
+    x_args = {}
+    for arg in x_args_raw:
+        if "=" in arg:
+            key, value = arg.split("=", 1)
+            x_args[key.strip()] = value.strip()
+        else:
+            raise ValueError(f"Invalid argument: {arg}")
+
+    create_schema = x_args.get("create_schema", "true").lower() == "true"
+    upgrade_all_tenants = x_args.get("upgrade_all_tenants", "false").lower() == "true"
+
+    # continue on error with individual tenant
+    # only applies to online migrations
+    continue_on_error = x_args.get("continue", "false").lower() == "true"
+
+    # Tenant range filtering
+    tenant_range_start = None
+    tenant_range_end = None
+
+    if "tenant_range_start" in x_args:
+        try:
+            tenant_range_start = int(x_args["tenant_range_start"])
+        except ValueError:
+            raise ValueError(
+                f"Invalid tenant_range_start value: {x_args['tenant_range_start']}. Must be an integer."
+            )
+
+    if "tenant_range_end" in x_args:
+        try:
+            tenant_range_end = int(x_args["tenant_range_end"])
+        except ValueError:
+            raise ValueError(
+                f"Invalid tenant_range_end value: {x_args['tenant_range_end']}. Must be an integer."
+            )
+
+    # Validate range
+    if tenant_range_start is not None and tenant_range_end is not None:
+        if tenant_range_start > tenant_range_end:
+            raise ValueError(
+                f"tenant_range_start ({tenant_range_start}) cannot be greater than tenant_range_end ({tenant_range_end})"
+            )
+
+    # Specific schema names filtering (replaces both schema_name and the old tenant_ids approach)
+    schemas = None
+    if "schemas" in x_args:
+        schema_names_str = x_args["schemas"].strip()
+        if schema_names_str:
+            # Split by comma and strip whitespace
+            schemas = [
+                name.strip() for name in schema_names_str.split(",") if name.strip()
+            ]
+            if schemas:
+                logger.info(f"Specific schema names specified: {schemas}")
+
+    # Validate that only one method is used at a time
+    range_filtering = tenant_range_start is not None or tenant_range_end is not None
+    specific_filtering = schemas is not None and len(schemas) > 0
+
+    if range_filtering and specific_filtering:
+        raise ValueError(
+            "Cannot use both tenant range filtering (tenant_range_start/tenant_range_end) "
+            "and specific schema filtering (schemas) at the same time. "
+            "Please use only one filtering method."
+        )
+
+    if upgrade_all_tenants and specific_filtering:
+        raise ValueError(
+            "Cannot use both upgrade_all_tenants=true and schemas at the same time. "
+            "Use either upgrade_all_tenants=true for all tenants, or schemas for specific schemas."
+        )
+
+    # If any filtering parameters are specified, we're not doing the default single schema migration
+    if range_filtering:
+        upgrade_all_tenants = True
+
+    # Validate multi-tenant requirements
+    if MULTI_TENANT and not upgrade_all_tenants and not specific_filtering:
+        raise ValueError(
+            "In multi-tenant mode, you must specify either upgrade_all_tenants=true "
+            "or provide schemas. Cannot run default migration."
+        )
+
+    return (
+        create_schema,
+        upgrade_all_tenants,
+        continue_on_error,
+        tenant_range_start,
+        tenant_range_end,
+        schemas,
+    )
+
+
+def do_run_migrations(
+    connection: Connection, schema_name: str, create_schema: bool
+) -> None:
+    if create_schema:
+        connection.execute(text(f'CREATE SCHEMA IF NOT EXISTS "{schema_name}"'))
+        connection.execute(text("COMMIT"))
+
+    connection.execute(text(f'SET search_path TO "{schema_name}"'))
+
     context.configure(
-        url=url,
-        target_metadata=target_metadata,
-        literal_binds=True,
-        dialect_opts={"paramstyle": "named"},
+        connection=connection,
+        target_metadata=target_metadata,  # type: ignore
+        include_object=include_object,
+        version_table_schema=schema_name,
+        include_schemas=True,
+        compare_type=True,
+        compare_server_default=True,
+        script_location=config.get_main_option("script_location"),
     )
 
     with context.begin_transaction():
         context.run_migrations()
 
 
-def do_run_migrations(connection: Connection) -> None:
-    context.configure(connection=connection, target_metadata=target_metadata)
+def provide_iam_token_for_alembic(
+    dialect: Any, conn_rec: Any, cargs: Any, cparams: Any
+) -> None:
+    if USE_IAM_AUTH:
+        # Database connection settings
+        region = AWS_REGION_NAME
+        host = POSTGRES_HOST
+        port = POSTGRES_PORT
+        user = POSTGRES_USER
 
-    with context.begin_transaction():
-        context.run_migrations()
+        # Get IAM authentication token
+        token = get_iam_auth_token(host, port, user, region)
+
+        # For Alembic / SQLAlchemy in this context, set SSL and password
+        cparams["password"] = token
+        cparams["ssl"] = ssl_context
 
 
 async def run_async_migrations() -> None:
-    """In this scenario we need to create an Engine
-    and associate a connection with the context.
+    (
+        create_schema,
+        upgrade_all_tenants,
+        continue_on_error,
+        tenant_range_start,
+        tenant_range_end,
+        schemas,
+    ) = get_schema_options()
 
-    """
+    if not schemas and not MULTI_TENANT:
+        schemas = [POSTGRES_DEFAULT_SCHEMA]
 
-    connectable = create_async_engine(
+    # without init_engine, subsequent engine calls fail hard intentionally
+    SqlEngine.init_engine(pool_size=20, max_overflow=5)
+
+    engine = create_async_engine(
         build_connection_string(),
         poolclass=pool.NullPool,
     )
 
-    async with connectable.connect() as connection:
-        await connection.run_sync(do_run_migrations)
+    if USE_IAM_AUTH:
 
-    await connectable.dispose()
+        @event.listens_for(engine.sync_engine, "do_connect")
+        def event_provide_iam_token_for_alembic(
+            dialect: Any, conn_rec: Any, cargs: Any, cparams: Any
+        ) -> None:
+            provide_iam_token_for_alembic(dialect, conn_rec, cargs, cparams)
+
+    if schemas:
+        # Use specific schema names directly without fetching all tenants
+        logger.info(f"Migrating specific schema names: {schemas}")
+
+        i_schema = 0
+        num_schemas = len(schemas)
+        for schema in schemas:
+            i_schema += 1
+            logger.info(
+                f"Migrating schema: index={i_schema} num_schemas={num_schemas} schema={schema}"
+            )
+            try:
+                async with engine.connect() as connection:
+                    await connection.run_sync(
+                        do_run_migrations,
+                        schema_name=schema,
+                        create_schema=create_schema,
+                    )
+            except Exception as e:
+                logger.error(f"Error migrating schema {schema}: {e}")
+                if not continue_on_error:
+                    logger.error("--continue=true is not set, raising exception!")
+                    raise
+
+                logger.warning("--continue=true is set, continuing to next schema.")
+
+    elif upgrade_all_tenants:
+        tenant_schemas = get_all_tenant_ids()
+
+        filtered_tenant_schemas = filter_tenants_by_range(
+            tenant_schemas, tenant_range_start, tenant_range_end
+        )
+
+        if tenant_range_start is not None or tenant_range_end is not None:
+            logger.info(
+                f"Filtering tenants by range: start={tenant_range_start}, end={tenant_range_end}"
+            )
+            logger.info(
+                f"Total tenants: {len(tenant_schemas)}, Filtered tenants: {len(filtered_tenant_schemas)}"
+            )
+
+        i_tenant = 0
+        num_tenants = len(filtered_tenant_schemas)
+        for schema in filtered_tenant_schemas:
+            i_tenant += 1
+            logger.info(
+                f"Migrating schema: index={i_tenant} num_tenants={num_tenants} schema={schema}"
+            )
+            try:
+                async with engine.connect() as connection:
+                    await connection.run_sync(
+                        do_run_migrations,
+                        schema_name=schema,
+                        create_schema=create_schema,
+                    )
+            except Exception as e:
+                logger.error(f"Error migrating schema {schema}: {e}")
+                if not continue_on_error:
+                    logger.error("--continue=true is not set, raising exception!")
+                    raise
+
+                logger.warning("--continue=true is set, continuing to next schema.")
+
+    else:
+        # This should not happen in the new design since we require either
+        # upgrade_all_tenants=true or schemas in multi-tenant mode
+        # and for non-multi-tenant mode, we should use schemas with the default schema
+        raise ValueError(
+            "No migration target specified. Use either upgrade_all_tenants=true for all tenants "
+            "or schemas for specific schemas."
+        )
+
+    await engine.dispose()
+
+
+def run_migrations_offline() -> None:
+    """
+    NOTE(rkuo): This generates a sql script that can be used to migrate the database ...
+    instead of migrating the db live via an open connection
+
+    Not clear on when this would be used by us or if it even works.
+
+    If it is offline, then why are there calls to the db engine?
+
+    This doesn't really get used when we migrate in the cloud."""
+
+    logger.info("run_migrations_offline starting.")
+
+    # without init_engine, subsequent engine calls fail hard intentionally
+    SqlEngine.init_engine(pool_size=20, max_overflow=5)
+
+    (
+        create_schema,
+        upgrade_all_tenants,
+        continue_on_error,
+        tenant_range_start,
+        tenant_range_end,
+        schemas,
+    ) = get_schema_options()
+    url = build_connection_string()
+
+    if schemas:
+        # Use specific schema names directly without fetching all tenants
+        logger.info(f"Migrating specific schema names: {schemas}")
+
+        for schema in schemas:
+            logger.info(f"Migrating schema: {schema}")
+            context.configure(
+                url=url,
+                target_metadata=target_metadata,  # type: ignore
+                literal_binds=True,
+                include_object=include_object,
+                version_table_schema=schema,
+                include_schemas=True,
+                script_location=config.get_main_option("script_location"),
+                dialect_opts={"paramstyle": "named"},
+            )
+
+            with context.begin_transaction():
+                context.run_migrations()
+
+    elif upgrade_all_tenants:
+        engine = create_async_engine(url)
+
+        if USE_IAM_AUTH:
+
+            @event.listens_for(engine.sync_engine, "do_connect")
+            def event_provide_iam_token_for_alembic_offline(
+                dialect: Any, conn_rec: Any, cargs: Any, cparams: Any
+            ) -> None:
+                provide_iam_token_for_alembic(dialect, conn_rec, cargs, cparams)
+
+        tenant_schemas = get_all_tenant_ids()
+        engine.sync_engine.dispose()
+
+        filtered_tenant_schemas = filter_tenants_by_range(
+            tenant_schemas, tenant_range_start, tenant_range_end
+        )
+
+        if tenant_range_start is not None or tenant_range_end is not None:
+            logger.info(
+                f"Filtering tenants by range: start={tenant_range_start}, end={tenant_range_end}"
+            )
+            logger.info(
+                f"Total tenants: {len(tenant_schemas)}, Filtered tenants: {len(filtered_tenant_schemas)}"
+            )
+
+        for schema in filtered_tenant_schemas:
+            logger.info(f"Migrating schema: {schema}")
+            context.configure(
+                url=url,
+                target_metadata=target_metadata,  # type: ignore
+                literal_binds=True,
+                include_object=include_object,
+                version_table_schema=schema,
+                include_schemas=True,
+                script_location=config.get_main_option("script_location"),
+                dialect_opts={"paramstyle": "named"},
+            )
+
+            with context.begin_transaction():
+                context.run_migrations()
+    else:
+        # This should not happen in the new design
+        raise ValueError(
+            "No migration target specified. Use either upgrade_all_tenants=true for all tenants "
+            "or schemas for specific schemas."
+        )
 
 
 def run_migrations_online() -> None:
-    """Run migrations in 'online' mode."""
-
+    logger.info("run_migrations_online starting.")
     asyncio.run(run_async_migrations())
 
 

backend/alembic/versions/027381bce97c_add_shortcut_option_for_users.py

@@ -0,0 +1,30 @@
+"""add shortcut option for users
+
+Revision ID: 027381bce97c
+Revises: 6fc7886d665d
+Create Date: 2025-01-14 12:14:00.814390
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "027381bce97c"
+down_revision = "6fc7886d665d"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "user",
+        sa.Column(
+            "shortcut_enabled", sa.Boolean(), nullable=False, server_default="false"
+        ),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("user", "shortcut_enabled")

backend/alembic/versions/03bf8be6b53a_rework_kg_config.py

@@ -0,0 +1,121 @@
+"""rework-kg-config
+
+Revision ID: 03bf8be6b53a
+Revises: 65bc6e0f8500
+Create Date: 2025-06-16 10:52:34.815335
+
+"""
+
+import json
+
+
+from datetime import datetime
+from datetime import timedelta
+from sqlalchemy.dialects import postgresql
+from sqlalchemy import text
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "03bf8be6b53a"
+down_revision = "65bc6e0f8500"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # get current config
+    current_configs = (
+        op.get_bind()
+        .execute(text("SELECT kg_variable_name, kg_variable_values FROM kg_config"))
+        .all()
+    )
+    current_config_dict = {
+        config.kg_variable_name: (
+            config.kg_variable_values[0]
+            if config.kg_variable_name
+            not in ("KG_VENDOR_DOMAINS", "KG_IGNORE_EMAIL_DOMAINS")
+            else config.kg_variable_values
+        )
+        for config in current_configs
+        if config.kg_variable_values
+    }
+
+    # not using the KGConfigSettings model here in case it changes in the future
+    kg_config_settings = json.dumps(
+        {
+            "KG_EXPOSED": current_config_dict.get("KG_EXPOSED", False),
+            "KG_ENABLED": current_config_dict.get("KG_ENABLED", False),
+            "KG_VENDOR": current_config_dict.get("KG_VENDOR", None),
+            "KG_VENDOR_DOMAINS": current_config_dict.get("KG_VENDOR_DOMAINS", []),
+            "KG_IGNORE_EMAIL_DOMAINS": current_config_dict.get(
+                "KG_IGNORE_EMAIL_DOMAINS", []
+            ),
+            "KG_COVERAGE_START": current_config_dict.get(
+                "KG_COVERAGE_START",
+                (datetime.now() - timedelta(days=90)).strftime("%Y-%m-%d"),
+            ),
+            "KG_MAX_COVERAGE_DAYS": current_config_dict.get("KG_MAX_COVERAGE_DAYS", 90),
+            "KG_MAX_PARENT_RECURSION_DEPTH": current_config_dict.get(
+                "KG_MAX_PARENT_RECURSION_DEPTH", 2
+            ),
+            "KG_BETA_PERSONA_ID": current_config_dict.get("KG_BETA_PERSONA_ID", None),
+        }
+    )
+    op.execute(
+        f"INSERT INTO key_value_store (key, value) VALUES ('kg_config', '{kg_config_settings}')"
+    )
+
+    # drop kg config table
+    op.drop_table("kg_config")
+
+
+def downgrade() -> None:
+    # get current config
+    current_config_dict = {
+        "KG_EXPOSED": False,
+        "KG_ENABLED": False,
+        "KG_VENDOR": [],
+        "KG_VENDOR_DOMAINS": [],
+        "KG_IGNORE_EMAIL_DOMAINS": [],
+        "KG_COVERAGE_START": (datetime.now() - timedelta(days=90)).strftime("%Y-%m-%d"),
+        "KG_MAX_COVERAGE_DAYS": 90,
+        "KG_MAX_PARENT_RECURSION_DEPTH": 2,
+    }
+    current_configs = (
+        op.get_bind()
+        .execute(text("SELECT value FROM key_value_store WHERE key = 'kg_config'"))
+        .one_or_none()
+    )
+    if current_configs is not None:
+        current_config_dict.update(current_configs[0])
+    insert_values = [
+        {
+            "kg_variable_name": name,
+            "kg_variable_values": (
+                [str(val).lower() if isinstance(val, bool) else str(val)]
+                if not isinstance(val, list)
+                else val
+            ),
+        }
+        for name, val in current_config_dict.items()
+    ]
+
+    op.create_table(
+        "kg_config",
+        sa.Column("id", sa.Integer(), primary_key=True, nullable=False, index=True),
+        sa.Column("kg_variable_name", sa.String(), nullable=False, index=True),
+        sa.Column("kg_variable_values", postgresql.ARRAY(sa.String()), nullable=False),
+        sa.UniqueConstraint("kg_variable_name", name="uq_kg_config_variable_name"),
+    )
+    op.bulk_insert(
+        sa.table(
+            "kg_config",
+            sa.column("kg_variable_name", sa.String),
+            sa.column("kg_variable_values", postgresql.ARRAY(sa.String)),
+        ),
+        insert_values,
+    )
+
+    op.execute("DELETE FROM key_value_store WHERE key = 'kg_config'")

backend/alembic/versions/03d710ccf29c_add_permission_sync_attempt_tables.py

@@ -0,0 +1,153 @@
+"""add permission sync attempt tables
+
+Revision ID: 03d710ccf29c
+Revises: 96a5702df6aa
+Create Date: 2025-09-11 13:30:00.000000
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "03d710ccf29c"  # Generate a new unique ID
+down_revision = "96a5702df6aa"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # Create the permission sync status enum
+    permission_sync_status_enum = sa.Enum(
+        "not_started",
+        "in_progress",
+        "success",
+        "canceled",
+        "failed",
+        "completed_with_errors",
+        name="permissionsyncstatus",
+        native_enum=False,
+    )
+
+    # Create doc_permission_sync_attempt table
+    op.create_table(
+        "doc_permission_sync_attempt",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column("connector_credential_pair_id", sa.Integer(), nullable=False),
+        sa.Column("status", permission_sync_status_enum, nullable=False),
+        sa.Column("total_docs_synced", sa.Integer(), nullable=True),
+        sa.Column("docs_with_permission_errors", sa.Integer(), nullable=True),
+        sa.Column("error_message", sa.Text(), nullable=True),
+        sa.Column(
+            "time_created",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.Column("time_started", sa.DateTime(timezone=True), nullable=True),
+        sa.Column("time_finished", sa.DateTime(timezone=True), nullable=True),
+        sa.ForeignKeyConstraint(
+            ["connector_credential_pair_id"],
+            ["connector_credential_pair.id"],
+        ),
+        sa.PrimaryKeyConstraint("id"),
+    )
+
+    # Create indexes for doc_permission_sync_attempt
+    op.create_index(
+        "ix_doc_permission_sync_attempt_time_created",
+        "doc_permission_sync_attempt",
+        ["time_created"],
+        unique=False,
+    )
+    op.create_index(
+        "ix_permission_sync_attempt_latest_for_cc_pair",
+        "doc_permission_sync_attempt",
+        ["connector_credential_pair_id", "time_created"],
+        unique=False,
+    )
+    op.create_index(
+        "ix_permission_sync_attempt_status_time",
+        "doc_permission_sync_attempt",
+        ["status", sa.text("time_finished DESC")],
+        unique=False,
+    )
+
+    # Create external_group_permission_sync_attempt table
+    # connector_credential_pair_id is nullable - group syncs can be global (e.g., Confluence)
+    op.create_table(
+        "external_group_permission_sync_attempt",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column("connector_credential_pair_id", sa.Integer(), nullable=True),
+        sa.Column("status", permission_sync_status_enum, nullable=False),
+        sa.Column("total_users_processed", sa.Integer(), nullable=True),
+        sa.Column("total_groups_processed", sa.Integer(), nullable=True),
+        sa.Column("total_group_memberships_synced", sa.Integer(), nullable=True),
+        sa.Column("error_message", sa.Text(), nullable=True),
+        sa.Column(
+            "time_created",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.Column("time_started", sa.DateTime(timezone=True), nullable=True),
+        sa.Column("time_finished", sa.DateTime(timezone=True), nullable=True),
+        sa.ForeignKeyConstraint(
+            ["connector_credential_pair_id"],
+            ["connector_credential_pair.id"],
+        ),
+        sa.PrimaryKeyConstraint("id"),
+    )
+
+    # Create indexes for external_group_permission_sync_attempt
+    op.create_index(
+        "ix_external_group_permission_sync_attempt_time_created",
+        "external_group_permission_sync_attempt",
+        ["time_created"],
+        unique=False,
+    )
+    op.create_index(
+        "ix_group_sync_attempt_cc_pair_time",
+        "external_group_permission_sync_attempt",
+        ["connector_credential_pair_id", "time_created"],
+        unique=False,
+    )
+    op.create_index(
+        "ix_group_sync_attempt_status_time",
+        "external_group_permission_sync_attempt",
+        ["status", sa.text("time_finished DESC")],
+        unique=False,
+    )
+
+
+def downgrade() -> None:
+    # Drop indexes
+    op.drop_index(
+        "ix_group_sync_attempt_status_time",
+        table_name="external_group_permission_sync_attempt",
+    )
+    op.drop_index(
+        "ix_group_sync_attempt_cc_pair_time",
+        table_name="external_group_permission_sync_attempt",
+    )
+    op.drop_index(
+        "ix_external_group_permission_sync_attempt_time_created",
+        table_name="external_group_permission_sync_attempt",
+    )
+    op.drop_index(
+        "ix_permission_sync_attempt_status_time",
+        table_name="doc_permission_sync_attempt",
+    )
+    op.drop_index(
+        "ix_permission_sync_attempt_latest_for_cc_pair",
+        table_name="doc_permission_sync_attempt",
+    )
+    op.drop_index(
+        "ix_doc_permission_sync_attempt_time_created",
+        table_name="doc_permission_sync_attempt",
+    )
+
+    # Drop tables
+    op.drop_table("external_group_permission_sync_attempt")
+    op.drop_table("doc_permission_sync_attempt")

backend/alembic/versions/0568ccf46a6b_add_thread_specific_model_selection.py

@@ -0,0 +1,27 @@
+"""Add thread specific model selection
+
+Revision ID: 0568ccf46a6b
+Revises: e209dc5a8156
+Create Date: 2024-06-19 14:25:36.376046
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "0568ccf46a6b"
+down_revision = "e209dc5a8156"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "chat_session",
+        sa.Column("current_alternate_model", sa.String(), nullable=True),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("chat_session", "current_alternate_model")

backend/alembic/versions/05c07bf07c00_add_search_doc_relevance_details.py

@@ -0,0 +1,32 @@
+"""add search doc relevance details
+
+Revision ID: 05c07bf07c00
+Revises: b896bbd0d5a7
+Create Date: 2024-07-10 17:48:15.886653
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "05c07bf07c00"
+down_revision = "b896bbd0d5a7"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "search_doc",
+        sa.Column("is_relevant", sa.Boolean(), nullable=True),
+    )
+    op.add_column(
+        "search_doc",
+        sa.Column("relevance_explanation", sa.String(), nullable=True),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("search_doc", "relevance_explanation")
+    op.drop_column("search_doc", "is_relevant")

backend/alembic/versions/0816326d83aa_add_federated_connector_tables.py

@@ -0,0 +1,72 @@
+"""add federated connector tables
+
+Revision ID: 0816326d83aa
+Revises: 12635f6655b7
+Create Date: 2025-06-29 14:09:45.109518
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.dialects import postgresql
+
+
+# revision identifiers, used by Alembic.
+revision = "0816326d83aa"
+down_revision = "12635f6655b7"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # Create federated_connector table
+    op.create_table(
+        "federated_connector",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column("source", sa.String(), nullable=False),
+        sa.Column("credentials", sa.LargeBinary(), nullable=False),
+        sa.PrimaryKeyConstraint("id"),
+    )
+
+    # Create federated_connector_oauth_token table
+    op.create_table(
+        "federated_connector_oauth_token",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column("federated_connector_id", sa.Integer(), nullable=False),
+        sa.Column("user_id", postgresql.UUID(as_uuid=True), nullable=False),
+        sa.Column("token", sa.LargeBinary(), nullable=False),
+        sa.Column("expires_at", sa.DateTime(), nullable=True),
+        sa.ForeignKeyConstraint(
+            ["federated_connector_id"], ["federated_connector.id"], ondelete="CASCADE"
+        ),
+        sa.ForeignKeyConstraint(["user_id"], ["user.id"], ondelete="CASCADE"),
+        sa.PrimaryKeyConstraint("id"),
+    )
+
+    # Create federated_connector__document_set table
+    op.create_table(
+        "federated_connector__document_set",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column("federated_connector_id", sa.Integer(), nullable=False),
+        sa.Column("document_set_id", sa.Integer(), nullable=False),
+        sa.Column("entities", postgresql.JSONB(), nullable=False),
+        sa.ForeignKeyConstraint(
+            ["federated_connector_id"], ["federated_connector.id"], ondelete="CASCADE"
+        ),
+        sa.ForeignKeyConstraint(
+            ["document_set_id"], ["document_set.id"], ondelete="CASCADE"
+        ),
+        sa.PrimaryKeyConstraint("id"),
+        sa.UniqueConstraint(
+            "federated_connector_id",
+            "document_set_id",
+            name="uq_federated_connector_document_set",
+        ),
+    )
+
+
+def downgrade() -> None:
+    # Drop tables in reverse order due to foreign key dependencies
+    op.drop_table("federated_connector__document_set")
+    op.drop_table("federated_connector_oauth_token")
+    op.drop_table("federated_connector")

backend/alembic/versions/08a1eda20fe1_add_earliest_indexing_to_connector.py

@@ -0,0 +1,27 @@
+"""add_indexing_start_to_connector
+
+Revision ID: 08a1eda20fe1
+Revises: 8a87bd6ec550
+Create Date: 2024-07-23 11:12:39.462397
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "08a1eda20fe1"
+down_revision = "8a87bd6ec550"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "connector", sa.Column("indexing_start", sa.DateTime(), nullable=True)
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("connector", "indexing_start")

backend/alembic/versions/09995b8811eb_add_theme_preference_to_user.py

@@ -0,0 +1,33 @@
+"""add theme_preference to user
+
+Revision ID: 09995b8811eb
+Revises: 3d1cca026fe8
+Create Date: 2025-10-24 08:58:50.246949
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from onyx.db.enums import ThemePreference
+
+
+# revision identifiers, used by Alembic.
+revision = "09995b8811eb"
+down_revision = "3d1cca026fe8"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "user",
+        sa.Column(
+            "theme_preference",
+            sa.Enum(ThemePreference, native_enum=False),
+            nullable=True,
+        ),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("user", "theme_preference")

backend/alembic/versions/0a2b51deb0b8_add_starter_prompts.py

@@ -0,0 +1,32 @@
+"""Add starter prompts
+
+Revision ID: 0a2b51deb0b8
+Revises: 5f4b8568a221
+Create Date: 2024-03-02 23:23:49.960309
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.dialects import postgresql
+
+# revision identifiers, used by Alembic.
+revision = "0a2b51deb0b8"
+down_revision = "5f4b8568a221"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "persona",
+        sa.Column(
+            "starter_messages",
+            postgresql.JSONB(astext_type=sa.Text()),
+            nullable=True,
+        ),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("persona", "starter_messages")

backend/alembic/versions/0a98909f2757_enable_encrypted_fields.py

@@ -0,0 +1,114 @@
+"""Enable Encrypted Fields
+
+Revision ID: 0a98909f2757
+Revises: 570282d33c49
+Create Date: 2024-05-05 19:30:34.317972
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.sql import table
+from sqlalchemy.dialects import postgresql
+import json
+
+from onyx.utils.encryption import encrypt_string_to_bytes
+
+# revision identifiers, used by Alembic.
+revision = "0a98909f2757"
+down_revision = "570282d33c49"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    connection = op.get_bind()
+
+    op.alter_column("key_value_store", "value", nullable=True)
+    op.add_column(
+        "key_value_store",
+        sa.Column(
+            "encrypted_value",
+            sa.LargeBinary,
+            nullable=True,
+        ),
+    )
+
+    # Need a temporary column to translate the JSONB to binary
+    op.add_column("credential", sa.Column("temp_column", sa.LargeBinary()))
+
+    creds_table = table(
+        "credential",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column(
+            "credential_json",
+            postgresql.JSONB(astext_type=sa.Text()),
+            nullable=False,
+        ),
+        sa.Column(
+            "temp_column",
+            sa.LargeBinary(),
+            nullable=False,
+        ),
+    )
+
+    results = connection.execute(sa.select(creds_table))
+
+    # This uses the MIT encrypt which does not actually encrypt the credentials
+    # In other words, this upgrade does not apply the encryption. Porting existing sensitive data
+    # and key rotation currently is not supported and will come out in the future
+    for row_id, creds, _ in results:
+        creds_binary = encrypt_string_to_bytes(json.dumps(creds))
+        connection.execute(
+            creds_table.update()
+            .where(creds_table.c.id == row_id)
+            .values(temp_column=creds_binary)
+        )
+
+    op.drop_column("credential", "credential_json")
+    op.alter_column("credential", "temp_column", new_column_name="credential_json")
+
+    op.add_column("llm_provider", sa.Column("temp_column", sa.LargeBinary()))
+
+    llm_table = table(
+        "llm_provider",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column(
+            "api_key",
+            sa.String(),
+            nullable=False,
+        ),
+        sa.Column(
+            "temp_column",
+            sa.LargeBinary(),
+            nullable=False,
+        ),
+    )
+    results = connection.execute(sa.select(llm_table))
+
+    for row_id, api_key, _ in results:
+        llm_key = encrypt_string_to_bytes(api_key)
+        connection.execute(
+            llm_table.update()
+            .where(llm_table.c.id == row_id)
+            .values(temp_column=llm_key)
+        )
+
+    op.drop_column("llm_provider", "api_key")
+    op.alter_column("llm_provider", "temp_column", new_column_name="api_key")
+
+
+def downgrade() -> None:
+    # Some information loss but this is ok. Should not allow decryption via downgrade.
+    op.drop_column("credential", "credential_json")
+    op.drop_column("llm_provider", "api_key")
+
+    op.add_column("llm_provider", sa.Column("api_key", sa.String()))
+    op.add_column(
+        "credential",
+        sa.Column("credential_json", postgresql.JSONB(astext_type=sa.Text())),
+    )
+
+    op.execute("DELETE FROM key_value_store WHERE value IS NULL")
+    op.alter_column("key_value_store", "value", nullable=False)
+    op.drop_column("key_value_store", "encrypted_value")

backend/alembic/versions/0cd424f32b1d_user_file_data_preparation_and_backfill.py

@@ -0,0 +1,389 @@
+"""Migration 2: User file data preparation and backfill
+
+Revision ID: 0cd424f32b1d
+Revises: 9b66d3156fc6
+Create Date: 2025-09-22 09:44:42.727034
+
+This migration populates the new columns added in migration 1.
+It prepares data for the UUID transition and relationship migration.
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy import text
+import logging
+
+logger = logging.getLogger("alembic.runtime.migration")
+
+# revision identifiers, used by Alembic.
+revision = "0cd424f32b1d"
+down_revision = "9b66d3156fc6"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    """Populate new columns with data."""
+
+    bind = op.get_bind()
+    inspector = sa.inspect(bind)
+
+    # === Step 1: Populate user_file.new_id ===
+    user_file_columns = [col["name"] for col in inspector.get_columns("user_file")]
+    has_new_id = "new_id" in user_file_columns
+
+    if has_new_id:
+        logger.info("Populating user_file.new_id with UUIDs...")
+
+        # Count rows needing UUIDs
+        null_count = bind.execute(
+            text("SELECT COUNT(*) FROM user_file WHERE new_id IS NULL")
+        ).scalar_one()
+
+        if null_count > 0:
+            logger.info(f"Generating UUIDs for {null_count} user_file records...")
+
+            # Populate in batches to avoid long locks
+            batch_size = 10000
+            total_updated = 0
+
+            while True:
+                result = bind.execute(
+                    text(
+                        """
+                    UPDATE user_file
+                    SET new_id = gen_random_uuid()
+                    WHERE new_id IS NULL
+                    AND id IN (
+                        SELECT id FROM user_file
+                        WHERE new_id IS NULL
+                        LIMIT :batch_size
+                    )
+                """
+                    ),
+                    {"batch_size": batch_size},
+                )
+
+                updated = result.rowcount
+                total_updated += updated
+
+                if updated < batch_size:
+                    break
+
+                logger.info(f"  Updated {total_updated}/{null_count} records...")
+
+            logger.info(f"Generated UUIDs for {total_updated} user_file records")
+
+        # Verify all records have UUIDs
+        remaining_null = bind.execute(
+            text("SELECT COUNT(*) FROM user_file WHERE new_id IS NULL")
+        ).scalar_one()
+
+        if remaining_null > 0:
+            raise Exception(
+                f"Failed to populate all user_file.new_id values ({remaining_null} NULL)"
+            )
+
+        # Lock down the column
+        op.alter_column("user_file", "new_id", nullable=False)
+        op.alter_column("user_file", "new_id", server_default=None)
+        logger.info("Locked down user_file.new_id column")
+
+    # === Step 2: Populate persona__user_file.user_file_id_uuid ===
+    persona_user_file_columns = [
+        col["name"] for col in inspector.get_columns("persona__user_file")
+    ]
+
+    if has_new_id and "user_file_id_uuid" in persona_user_file_columns:
+        logger.info("Populating persona__user_file.user_file_id_uuid...")
+
+        # Count rows needing update
+        null_count = bind.execute(
+            text(
+                """
+            SELECT COUNT(*) FROM persona__user_file
+            WHERE user_file_id IS NOT NULL AND user_file_id_uuid IS NULL
+        """
+            )
+        ).scalar_one()
+
+        if null_count > 0:
+            logger.info(f"Updating {null_count} persona__user_file records...")
+
+            # Update in batches
+            batch_size = 10000
+            total_updated = 0
+
+            while True:
+                result = bind.execute(
+                    text(
+                        """
+                    UPDATE persona__user_file p
+                    SET user_file_id_uuid = uf.new_id
+                    FROM user_file uf
+                    WHERE p.user_file_id = uf.id
+                    AND p.user_file_id_uuid IS NULL
+                    AND p.persona_id IN (
+                        SELECT persona_id
+                        FROM persona__user_file
+                        WHERE user_file_id_uuid IS NULL
+                        LIMIT :batch_size
+                    )
+                """
+                    ),
+                    {"batch_size": batch_size},
+                )
+
+                updated = result.rowcount
+                total_updated += updated
+
+                if updated < batch_size:
+                    break
+
+                logger.info(f"  Updated {total_updated}/{null_count} records...")
+
+            logger.info(f"Updated {total_updated} persona__user_file records")
+
+        # Verify all records are populated
+        remaining_null = bind.execute(
+            text(
+                """
+            SELECT COUNT(*) FROM persona__user_file
+            WHERE user_file_id IS NOT NULL AND user_file_id_uuid IS NULL
+        """
+            )
+        ).scalar_one()
+
+        if remaining_null > 0:
+            raise Exception(
+                f"Failed to populate all persona__user_file.user_file_id_uuid values ({remaining_null} NULL)"
+            )
+
+        op.alter_column("persona__user_file", "user_file_id_uuid", nullable=False)
+        logger.info("Locked down persona__user_file.user_file_id_uuid column")
+
+    # === Step 3: Create user_project records from chat_folder ===
+    if "chat_folder" in inspector.get_table_names():
+        logger.info("Creating user_project records from chat_folder...")
+
+        result = bind.execute(
+            text(
+                """
+            INSERT INTO user_project (user_id, name)
+            SELECT cf.user_id, cf.name
+            FROM chat_folder cf
+            WHERE NOT EXISTS (
+                SELECT 1
+                FROM user_project up
+                WHERE up.user_id = cf.user_id AND up.name = cf.name
+            )
+        """
+            )
+        )
+
+        logger.info(f"Created {result.rowcount} user_project records from chat_folder")
+
+    # === Step 4: Populate chat_session.project_id ===
+    chat_session_columns = [
+        col["name"] for col in inspector.get_columns("chat_session")
+    ]
+
+    if "folder_id" in chat_session_columns and "project_id" in chat_session_columns:
+        logger.info("Populating chat_session.project_id...")
+
+        # Count sessions needing update
+        null_count = bind.execute(
+            text(
+                """
+            SELECT COUNT(*) FROM chat_session
+            WHERE project_id IS NULL AND folder_id IS NOT NULL
+        """
+            )
+        ).scalar_one()
+
+        if null_count > 0:
+            logger.info(f"Updating {null_count} chat_session records...")
+
+            result = bind.execute(
+                text(
+                    """
+                UPDATE chat_session cs
+                SET project_id = up.id
+                FROM chat_folder cf
+                JOIN user_project up ON up.user_id = cf.user_id AND up.name = cf.name
+                WHERE cs.folder_id = cf.id AND cs.project_id IS NULL
+            """
+                )
+            )
+
+            logger.info(f"Updated {result.rowcount} chat_session records")
+
+        # Verify all records are populated
+        remaining_null = bind.execute(
+            text(
+                """
+            SELECT COUNT(*) FROM chat_session
+            WHERE project_id IS NULL AND folder_id IS NOT NULL
+        """
+            )
+        ).scalar_one()
+
+        if remaining_null > 0:
+            logger.warning(
+                f"Warning: {remaining_null} chat_session records could not be mapped to projects"
+            )
+
+    # === Step 5: Update plaintext FileRecord IDs/display names to UUID scheme ===
+    # Prior to UUID migration, plaintext cache files were stored with file_id like 'plain_text_<int_id>'.
+    # After migration, we use 'plaintext_<uuid>' (note the name change to 'plaintext_').
+    # This step remaps existing FileRecord rows to the new naming while preserving object_key/bucket.
+    logger.info("Updating plaintext FileRecord ids and display names to UUID scheme...")
+
+    # Count legacy plaintext records that can be mapped to UUID user_file ids
+    count_query = text(
+        """
+        SELECT COUNT(*)
+        FROM file_record fr
+        JOIN user_file uf ON fr.file_id = CONCAT('plaintext_', uf.id::text)
+        WHERE LOWER(fr.file_origin::text) = 'plaintext_cache'
+        """
+    )
+    legacy_count = bind.execute(count_query).scalar_one()
+
+    if legacy_count and legacy_count > 0:
+        logger.info(f"Found {legacy_count} legacy plaintext file records to update")
+
+        # Update display_name first for readability (safe regardless of rename)
+        bind.execute(
+            text(
+                """
+                UPDATE file_record fr
+                SET display_name = CONCAT('Plaintext for user file ', uf.new_id::text)
+                FROM user_file uf
+                WHERE LOWER(fr.file_origin::text) = 'plaintext_cache'
+                    AND fr.file_id = CONCAT('plaintext_', uf.id::text)
+                """
+            )
+        )
+
+        # Remap file_id from 'plaintext_<int>' -> 'plaintext_<uuid>' using transitional new_id
+        # Use a single UPDATE ... WHERE file_id LIKE 'plain_text_%'
+        # and ensure it aligns to existing user_file ids to avoid renaming unrelated rows
+        result = bind.execute(
+            text(
+                """
+                UPDATE file_record fr
+                SET file_id = CONCAT('plaintext_', uf.new_id::text)
+                FROM user_file uf
+                WHERE LOWER(fr.file_origin::text) = 'plaintext_cache'
+                    AND fr.file_id = CONCAT('plaintext_', uf.id::text)
+                """
+            )
+        )
+        logger.info(
+            f"Updated {result.rowcount} plaintext file_record ids to UUID scheme"
+        )
+
+    # === Step 6: Ensure document_id_migrated default TRUE and backfill existing FALSE ===
+    # New records should default to migrated=True so the migration task won't run for them.
+    # Existing rows that had a legacy document_id should be marked as not migrated to be processed.
+
+    # Backfill existing records: if document_id is not null, set to FALSE
+    bind.execute(
+        text(
+            """
+            UPDATE user_file
+            SET document_id_migrated = FALSE
+            WHERE document_id IS NOT NULL
+            """
+        )
+    )
+
+    # === Step 7: Backfill user_file.status from index_attempt ===
+    logger.info("Backfilling user_file.status from index_attempt...")
+
+    # Update user_file status based on latest index attempt
+    # Using CTEs instead of temp tables for asyncpg compatibility
+    result = bind.execute(
+        text(
+            """
+        WITH latest_attempt AS (
+            SELECT DISTINCT ON (ia.connector_credential_pair_id)
+                ia.connector_credential_pair_id,
+                ia.status
+            FROM index_attempt ia
+            ORDER BY ia.connector_credential_pair_id, ia.time_updated DESC
+        ),
+        uf_to_ccp AS (
+            SELECT DISTINCT uf.id AS uf_id, ccp.id AS cc_pair_id
+            FROM user_file uf
+            JOIN document_by_connector_credential_pair dcc
+                ON dcc.id = REPLACE(uf.document_id, 'USER_FILE_CONNECTOR__', 'FILE_CONNECTOR__')
+            JOIN connector_credential_pair ccp
+                ON ccp.connector_id = dcc.connector_id
+                AND ccp.credential_id = dcc.credential_id
+        )
+        UPDATE user_file uf
+        SET status = CASE
+            WHEN la.status IN ('NOT_STARTED', 'IN_PROGRESS') THEN 'PROCESSING'
+            WHEN la.status = 'SUCCESS' THEN 'COMPLETED'
+            ELSE 'FAILED'
+        END
+        FROM uf_to_ccp ufc
+        LEFT JOIN latest_attempt la
+            ON la.connector_credential_pair_id = ufc.cc_pair_id
+        WHERE uf.id = ufc.uf_id
+        AND uf.status = 'PROCESSING'
+    """
+        )
+    )
+
+    logger.info(f"Updated status for {result.rowcount} user_file records")
+
+    logger.info("Migration 2 (data preparation) completed successfully")
+
+
+def downgrade() -> None:
+    """Reset populated data to allow clean downgrade of schema."""
+
+    bind = op.get_bind()
+    inspector = sa.inspect(bind)
+
+    logger.info("Starting downgrade of data preparation...")
+
+    # Reset user_file columns to allow nulls before data removal
+    if "user_file" in inspector.get_table_names():
+        columns = [col["name"] for col in inspector.get_columns("user_file")]
+
+        if "new_id" in columns:
+            op.alter_column(
+                "user_file",
+                "new_id",
+                nullable=True,
+                server_default=sa.text("gen_random_uuid()"),
+            )
+            # Optionally clear the data
+            # bind.execute(text("UPDATE user_file SET new_id = NULL"))
+            logger.info("Reset user_file.new_id to nullable")
+
+    # Reset persona__user_file.user_file_id_uuid
+    if "persona__user_file" in inspector.get_table_names():
+        columns = [col["name"] for col in inspector.get_columns("persona__user_file")]
+
+        if "user_file_id_uuid" in columns:
+            op.alter_column("persona__user_file", "user_file_id_uuid", nullable=True)
+            # Optionally clear the data
+            # bind.execute(text("UPDATE persona__user_file SET user_file_id_uuid = NULL"))
+            logger.info("Reset persona__user_file.user_file_id_uuid to nullable")
+
+    # Note: We don't delete user_project records or reset chat_session.project_id
+    # as these might be in use and can be handled by the schema downgrade
+
+    # Reset user_file.status to default
+    if "user_file" in inspector.get_table_names():
+        columns = [col["name"] for col in inspector.get_columns("user_file")]
+        if "status" in columns:
+            bind.execute(text("UPDATE user_file SET status = 'PROCESSING'"))
+            logger.info("Reset user_file.status to default")
+
+    logger.info("Downgrade completed successfully")

backend/alembic/versions/0ebb1d516877_add_ccpair_deletion_failure_message.py

@@ -0,0 +1,28 @@
+"""add ccpair deletion failure message
+
+Revision ID: 0ebb1d516877
+Revises: 52a219fb5233
+Create Date: 2024-09-10 15:03:48.233926
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "0ebb1d516877"
+down_revision = "52a219fb5233"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "connector_credential_pair",
+        sa.Column("deletion_failure_message", sa.String(), nullable=True),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("connector_credential_pair", "deletion_failure_message")

backend/alembic/versions/0f7ff6d75b57_add_index_to_index_attempt_time_created.py

@@ -0,0 +1,37 @@
+"""add index to index_attempt.time_created
+
+Revision ID: 0f7ff6d75b57
+Revises: 369644546676
+Create Date: 2025-01-10 14:01:14.067144
+
+"""
+
+from alembic import op
+
+# revision identifiers, used by Alembic.
+revision = "0f7ff6d75b57"
+down_revision = "fec3db967bf7"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.create_index(
+        op.f("ix_index_attempt_status"),
+        "index_attempt",
+        ["status"],
+        unique=False,
+    )
+
+    op.create_index(
+        op.f("ix_index_attempt_time_created"),
+        "index_attempt",
+        ["time_created"],
+        unique=False,
+    )
+
+
+def downgrade() -> None:
+    op.drop_index(op.f("ix_index_attempt_time_created"), table_name="index_attempt")
+
+    op.drop_index(op.f("ix_index_attempt_status"), table_name="index_attempt")

backend/alembic/versions/12635f6655b7_drive_canonical_ids.py

@@ -0,0 +1,596 @@
+"""drive-canonical-ids
+
+Revision ID: 12635f6655b7
+Revises: 58c50ef19f08
+Create Date: 2025-06-20 14:44:54.241159
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from urllib.parse import urlparse, urlunparse
+from httpx import HTTPStatusError
+import httpx
+from onyx.document_index.factory import get_default_document_index
+from onyx.db.search_settings import SearchSettings
+from onyx.document_index.vespa.shared_utils.utils import get_vespa_http_client
+from onyx.document_index.vespa.shared_utils.utils import (
+    replace_invalid_doc_id_characters,
+)
+from onyx.document_index.vespa_constants import DOCUMENT_ID_ENDPOINT
+from onyx.utils.logger import setup_logger
+import os
+
+logger = setup_logger()
+
+# revision identifiers, used by Alembic.
+revision = "12635f6655b7"
+down_revision = "58c50ef19f08"
+branch_labels = None
+depends_on = None
+
+SKIP_CANON_DRIVE_IDS = os.environ.get("SKIP_CANON_DRIVE_IDS", "true").lower() == "true"
+
+
+def active_search_settings() -> tuple[SearchSettings, SearchSettings | None]:
+    result = op.get_bind().execute(
+        sa.text(
+            """
+        SELECT * FROM search_settings WHERE status = 'PRESENT' ORDER BY id DESC LIMIT 1
+        """
+        )
+    )
+    search_settings_fetch = result.fetchall()
+    search_settings = (
+        SearchSettings(**search_settings_fetch[0]._asdict())
+        if search_settings_fetch
+        else None
+    )
+
+    result2 = op.get_bind().execute(
+        sa.text(
+            """
+        SELECT * FROM search_settings WHERE status = 'FUTURE' ORDER BY id DESC LIMIT 1
+        """
+        )
+    )
+    search_settings_future_fetch = result2.fetchall()
+    search_settings_future = (
+        SearchSettings(**search_settings_future_fetch[0]._asdict())
+        if search_settings_future_fetch
+        else None
+    )
+
+    if not isinstance(search_settings, SearchSettings):
+        raise RuntimeError(
+            "current search settings is of type " + str(type(search_settings))
+        )
+    if (
+        not isinstance(search_settings_future, SearchSettings)
+        and search_settings_future is not None
+    ):
+        raise RuntimeError(
+            "future search settings is of type " + str(type(search_settings_future))
+        )
+
+    return search_settings, search_settings_future
+
+
+def normalize_google_drive_url(url: str) -> str:
+    """Remove query parameters from Google Drive URLs to create canonical document IDs.
+    NOTE: copied from drive doc_conversion.py
+    """
+    parsed_url = urlparse(url)
+    parsed_url = parsed_url._replace(query="")
+    spl_path = parsed_url.path.split("/")
+    if spl_path and (spl_path[-1] in ["edit", "view", "preview"]):
+        spl_path.pop()
+        parsed_url = parsed_url._replace(path="/".join(spl_path))
+    # Remove query parameters and reconstruct URL
+    return urlunparse(parsed_url)
+
+
+def get_google_drive_documents_from_database() -> list[dict]:
+    """Get all Google Drive documents from the database."""
+    bind = op.get_bind()
+    result = bind.execute(
+        sa.text(
+            """
+            SELECT d.id
+            FROM document d
+            JOIN document_by_connector_credential_pair dcc ON d.id = dcc.id
+            JOIN connector_credential_pair cc ON dcc.connector_id = cc.connector_id
+                AND dcc.credential_id = cc.credential_id
+            JOIN connector c ON cc.connector_id = c.id
+            WHERE c.source = 'GOOGLE_DRIVE'
+        """
+        )
+    )
+
+    documents = []
+    for row in result:
+        documents.append({"document_id": row.id})
+
+    return documents
+
+
+def update_document_id_in_database(
+    old_doc_id: str, new_doc_id: str, index_name: str
+) -> None:
+    """Update document IDs in all relevant database tables using copy-and-swap approach."""
+    bind = op.get_bind()
+
+    # print(f"Updating database tables for document {old_doc_id} -> {new_doc_id}")
+
+    # Check if new document ID already exists
+    result = bind.execute(
+        sa.text("SELECT COUNT(*) FROM document WHERE id = :new_id"),
+        {"new_id": new_doc_id},
+    )
+    row = result.fetchone()
+    if row and row[0] > 0:
+        # print(f"Document with ID {new_doc_id} already exists, deleting old one")
+        delete_document_from_db(old_doc_id, index_name)
+        return
+
+    # Step 1: Create a new document row with the new ID (copy all fields from old row)
+    # Use a conservative approach to handle columns that might not exist in all installations
+    try:
+        bind.execute(
+            sa.text(
+                """
+                INSERT INTO document (id, from_ingestion_api, boost, hidden, semantic_id,
+                                    link, doc_updated_at, primary_owners, secondary_owners,
+                                    external_user_emails, external_user_group_ids, is_public,
+                                    chunk_count, last_modified, last_synced, kg_stage, kg_processing_time)
+                SELECT :new_id, from_ingestion_api, boost, hidden, semantic_id,
+                       link, doc_updated_at, primary_owners, secondary_owners,
+                       external_user_emails, external_user_group_ids, is_public,
+                       chunk_count, last_modified, last_synced, kg_stage, kg_processing_time
+                FROM document
+                WHERE id = :old_id
+            """
+            ),
+            {"new_id": new_doc_id, "old_id": old_doc_id},
+        )
+        # print(f"Successfully updated database tables for document {old_doc_id} -> {new_doc_id}")
+    except Exception as e:
+        # If the full INSERT fails, try a more basic version with only core columns
+        logger.warning(f"Full INSERT failed, trying basic version: {e}")
+        bind.execute(
+            sa.text(
+                """
+                INSERT INTO document (id, from_ingestion_api, boost, hidden, semantic_id,
+                                    link, doc_updated_at, primary_owners, secondary_owners)
+                SELECT :new_id, from_ingestion_api, boost, hidden, semantic_id,
+                       link, doc_updated_at, primary_owners, secondary_owners
+                FROM document
+                WHERE id = :old_id
+            """
+            ),
+            {"new_id": new_doc_id, "old_id": old_doc_id},
+        )
+
+    # Step 2: Update all foreign key references to point to the new ID
+
+    # Update document_by_connector_credential_pair table
+    bind.execute(
+        sa.text(
+            "UPDATE document_by_connector_credential_pair SET id = :new_id WHERE id = :old_id"
+        ),
+        {"new_id": new_doc_id, "old_id": old_doc_id},
+    )
+    # print(f"Successfully updated document_by_connector_credential_pair table for document {old_doc_id} -> {new_doc_id}")
+
+    # Update search_doc table (stores search results for chat replay)
+    # This is critical for agent functionality
+    bind.execute(
+        sa.text(
+            "UPDATE search_doc SET document_id = :new_id WHERE document_id = :old_id"
+        ),
+        {"new_id": new_doc_id, "old_id": old_doc_id},
+    )
+    # print(f"Successfully updated search_doc table for document {old_doc_id} -> {new_doc_id}")
+    # Update document_retrieval_feedback table (user feedback on documents)
+    bind.execute(
+        sa.text(
+            "UPDATE document_retrieval_feedback SET document_id = :new_id WHERE document_id = :old_id"
+        ),
+        {"new_id": new_doc_id, "old_id": old_doc_id},
+    )
+    # print(f"Successfully updated document_retrieval_feedback table for document {old_doc_id} -> {new_doc_id}")
+    # Update document__tag table (document-tag relationships)
+    bind.execute(
+        sa.text(
+            "UPDATE document__tag SET document_id = :new_id WHERE document_id = :old_id"
+        ),
+        {"new_id": new_doc_id, "old_id": old_doc_id},
+    )
+    # print(f"Successfully updated document__tag table for document {old_doc_id} -> {new_doc_id}")
+    # Update user_file table (user uploaded files linked to documents)
+    bind.execute(
+        sa.text(
+            "UPDATE user_file SET document_id = :new_id WHERE document_id = :old_id"
+        ),
+        {"new_id": new_doc_id, "old_id": old_doc_id},
+    )
+    # print(f"Successfully updated user_file table for document {old_doc_id} -> {new_doc_id}")
+    # Update KG and chunk_stats tables (these may not exist in all installations)
+    try:
+        # Update kg_entity table
+        bind.execute(
+            sa.text(
+                "UPDATE kg_entity SET document_id = :new_id WHERE document_id = :old_id"
+            ),
+            {"new_id": new_doc_id, "old_id": old_doc_id},
+        )
+        # print(f"Successfully updated kg_entity table for document {old_doc_id} -> {new_doc_id}")
+        # Update kg_entity_extraction_staging table
+        bind.execute(
+            sa.text(
+                "UPDATE kg_entity_extraction_staging SET document_id = :new_id WHERE document_id = :old_id"
+            ),
+            {"new_id": new_doc_id, "old_id": old_doc_id},
+        )
+        # print(f"Successfully updated kg_entity_extraction_staging table for document {old_doc_id} -> {new_doc_id}")
+        # Update kg_relationship table
+        bind.execute(
+            sa.text(
+                "UPDATE kg_relationship SET source_document = :new_id WHERE source_document = :old_id"
+            ),
+            {"new_id": new_doc_id, "old_id": old_doc_id},
+        )
+        # print(f"Successfully updated kg_relationship table for document {old_doc_id} -> {new_doc_id}")
+        # Update kg_relationship_extraction_staging table
+        bind.execute(
+            sa.text(
+                "UPDATE kg_relationship_extraction_staging SET source_document = :new_id WHERE source_document = :old_id"
+            ),
+            {"new_id": new_doc_id, "old_id": old_doc_id},
+        )
+        # print(f"Successfully updated kg_relationship_extraction_staging table for document {old_doc_id} -> {new_doc_id}")
+        # Update chunk_stats table
+        bind.execute(
+            sa.text(
+                "UPDATE chunk_stats SET document_id = :new_id WHERE document_id = :old_id"
+            ),
+            {"new_id": new_doc_id, "old_id": old_doc_id},
+        )
+        # print(f"Successfully updated chunk_stats table for document {old_doc_id} -> {new_doc_id}")
+        # Update chunk_stats ID field which includes document_id
+        bind.execute(
+            sa.text(
+                """
+                UPDATE chunk_stats
+                SET id = REPLACE(id, :old_id, :new_id)
+                WHERE id LIKE :old_id_pattern
+            """
+            ),
+            {
+                "new_id": new_doc_id,
+                "old_id": old_doc_id,
+                "old_id_pattern": f"{old_doc_id}__%",
+            },
+        )
+        # print(f"Successfully updated chunk_stats ID field for document {old_doc_id} -> {new_doc_id}")
+    except Exception as e:
+        logger.warning(f"Some KG/chunk tables may not exist or failed to update: {e}")
+
+    # Step 3: Delete the old document row (this should now be safe since all FKs point to new row)
+    bind.execute(
+        sa.text("DELETE FROM document WHERE id = :old_id"), {"old_id": old_doc_id}
+    )
+    # print(f"Successfully deleted document {old_doc_id} from database")
+
+
+def _visit_chunks(
+    *,
+    http_client: httpx.Client,
+    index_name: str,
+    selection: str,
+    continuation: str | None = None,
+) -> tuple[list[dict], str | None]:
+    """Helper that calls the /document/v1 visit API once and returns (docs, next_token)."""
+
+    # Use the same URL as the document API, but with visit-specific params
+    base_url = DOCUMENT_ID_ENDPOINT.format(index_name=index_name)
+
+    params: dict[str, str] = {
+        "selection": selection,
+        "wantedDocumentCount": "1000",
+    }
+    if continuation:
+        params["continuation"] = continuation
+
+    # print(f"Visiting chunks for selection '{selection}' with params {params}")
+    resp = http_client.get(base_url, params=params, timeout=None)
+    # print(f"Visited chunks for document {selection}")
+    resp.raise_for_status()
+
+    payload = resp.json()
+    return payload.get("documents", []), payload.get("continuation")
+
+
+def delete_document_chunks_from_vespa(index_name: str, doc_id: str) -> None:
+    """Delete all chunks for *doc_id* from Vespa using continuation-token paging (no offset)."""
+
+    total_deleted = 0
+    # Use exact match instead of contains - Document Selector Language doesn't support contains
+    selection = f'{index_name}.document_id=="{doc_id}"'
+
+    with get_vespa_http_client() as http_client:
+        continuation: str | None = None
+        while True:
+            docs, continuation = _visit_chunks(
+                http_client=http_client,
+                index_name=index_name,
+                selection=selection,
+                continuation=continuation,
+            )
+
+            if not docs:
+                break
+
+            for doc in docs:
+                vespa_full_id = doc.get("id")
+                if not vespa_full_id:
+                    continue
+
+                vespa_doc_uuid = vespa_full_id.split("::")[-1]
+                delete_url = f"{DOCUMENT_ID_ENDPOINT.format(index_name=index_name)}/{vespa_doc_uuid}"
+
+                try:
+                    resp = http_client.delete(delete_url)
+                    resp.raise_for_status()
+                    total_deleted += 1
+                except Exception as e:
+                    print(f"Failed to delete chunk {vespa_doc_uuid}: {e}")
+
+            if not continuation:
+                break
+
+
+def update_document_id_in_vespa(
+    index_name: str, old_doc_id: str, new_doc_id: str
+) -> None:
+    """Update all chunks' document_id field from *old_doc_id* to *new_doc_id* using continuation paging."""
+
+    clean_new_doc_id = replace_invalid_doc_id_characters(new_doc_id)
+
+    # Use exact match instead of contains - Document Selector Language doesn't support contains
+    selection = f'{index_name}.document_id=="{old_doc_id}"'
+
+    with get_vespa_http_client() as http_client:
+        continuation: str | None = None
+        while True:
+            # print(f"Visiting chunks for document {old_doc_id} -> {new_doc_id}")
+            docs, continuation = _visit_chunks(
+                http_client=http_client,
+                index_name=index_name,
+                selection=selection,
+                continuation=continuation,
+            )
+
+            if not docs:
+                break
+
+            for doc in docs:
+                vespa_full_id = doc.get("id")
+                if not vespa_full_id:
+                    continue
+
+                vespa_doc_uuid = vespa_full_id.split("::")[-1]
+                vespa_url = f"{DOCUMENT_ID_ENDPOINT.format(index_name=index_name)}/{vespa_doc_uuid}"
+
+                update_request = {
+                    "fields": {"document_id": {"assign": clean_new_doc_id}}
+                }
+
+                try:
+                    resp = http_client.put(vespa_url, json=update_request)
+                    resp.raise_for_status()
+                except Exception as e:
+                    print(f"Failed to update chunk {vespa_doc_uuid}: {e}")
+                    raise
+
+            if not continuation:
+                break
+
+
+def delete_document_from_db(current_doc_id: str, index_name: str) -> None:
+    # Delete all foreign key references first, then delete the document
+    try:
+        bind = op.get_bind()
+
+        # Delete from agent-related tables first (order matters due to foreign keys)
+        # Delete from agent__sub_query__search_doc first since it references search_doc
+        bind.execute(
+            sa.text(
+                """
+                DELETE FROM agent__sub_query__search_doc
+                WHERE search_doc_id IN (
+                    SELECT id FROM search_doc WHERE document_id = :doc_id
+                )
+                """
+            ),
+            {"doc_id": current_doc_id},
+        )
+
+        # Delete from chat_message__search_doc
+        bind.execute(
+            sa.text(
+                """
+                DELETE FROM chat_message__search_doc
+                WHERE search_doc_id IN (
+                    SELECT id FROM search_doc WHERE document_id = :doc_id
+                )
+                """
+            ),
+            {"doc_id": current_doc_id},
+        )
+
+        # Now we can safely delete from search_doc
+        bind.execute(
+            sa.text("DELETE FROM search_doc WHERE document_id = :doc_id"),
+            {"doc_id": current_doc_id},
+        )
+
+        # Delete from document_by_connector_credential_pair
+        bind.execute(
+            sa.text(
+                "DELETE FROM document_by_connector_credential_pair WHERE id = :doc_id"
+            ),
+            {"doc_id": current_doc_id},
+        )
+
+        # Delete from other tables that reference this document
+        bind.execute(
+            sa.text(
+                "DELETE FROM document_retrieval_feedback WHERE document_id = :doc_id"
+            ),
+            {"doc_id": current_doc_id},
+        )
+
+        bind.execute(
+            sa.text("DELETE FROM document__tag WHERE document_id = :doc_id"),
+            {"doc_id": current_doc_id},
+        )
+
+        bind.execute(
+            sa.text("DELETE FROM user_file WHERE document_id = :doc_id"),
+            {"doc_id": current_doc_id},
+        )
+
+        # Delete from KG tables if they exist
+        try:
+            bind.execute(
+                sa.text("DELETE FROM kg_entity WHERE document_id = :doc_id"),
+                {"doc_id": current_doc_id},
+            )
+
+            bind.execute(
+                sa.text(
+                    "DELETE FROM kg_entity_extraction_staging WHERE document_id = :doc_id"
+                ),
+                {"doc_id": current_doc_id},
+            )
+
+            bind.execute(
+                sa.text("DELETE FROM kg_relationship WHERE source_document = :doc_id"),
+                {"doc_id": current_doc_id},
+            )
+
+            bind.execute(
+                sa.text(
+                    "DELETE FROM kg_relationship_extraction_staging WHERE source_document = :doc_id"
+                ),
+                {"doc_id": current_doc_id},
+            )
+
+            bind.execute(
+                sa.text("DELETE FROM chunk_stats WHERE document_id = :doc_id"),
+                {"doc_id": current_doc_id},
+            )
+
+            bind.execute(
+                sa.text("DELETE FROM chunk_stats WHERE id LIKE :doc_id_pattern"),
+                {"doc_id_pattern": f"{current_doc_id}__%"},
+            )
+
+        except Exception as e:
+            logger.warning(
+                f"Some KG/chunk tables may not exist or failed to delete from: {e}"
+            )
+
+        # Finally delete the document itself
+        bind.execute(
+            sa.text("DELETE FROM document WHERE id = :doc_id"),
+            {"doc_id": current_doc_id},
+        )
+
+        # Delete chunks from vespa
+        delete_document_chunks_from_vespa(index_name, current_doc_id)
+
+    except Exception as e:
+        print(f"Failed to delete duplicate document {current_doc_id}: {e}")
+        # Continue with other documents instead of failing the entire migration
+
+
+def upgrade() -> None:
+    if SKIP_CANON_DRIVE_IDS:
+        return
+    current_search_settings, future_search_settings = active_search_settings()
+    document_index = get_default_document_index(
+        current_search_settings,
+        future_search_settings,
+    )
+
+    # Get the index name
+    if hasattr(document_index, "index_name"):
+        index_name = document_index.index_name
+    else:
+        # Default index name if we can't get it from the document_index
+        index_name = "danswer_index"
+
+    # Get all Google Drive documents from the database (this is faster and more reliable)
+    gdrive_documents = get_google_drive_documents_from_database()
+
+    if not gdrive_documents:
+        return
+
+    # Track normalized document IDs to detect duplicates
+    all_normalized_doc_ids = set()
+    updated_count = 0
+
+    for doc_info in gdrive_documents:
+        current_doc_id = doc_info["document_id"]
+        normalized_doc_id = normalize_google_drive_url(current_doc_id)
+
+        print(f"Processing document {current_doc_id} -> {normalized_doc_id}")
+        # Check for duplicates
+        if normalized_doc_id in all_normalized_doc_ids:
+            # print(f"Deleting duplicate document {current_doc_id}")
+            delete_document_from_db(current_doc_id, index_name)
+            continue
+
+        all_normalized_doc_ids.add(normalized_doc_id)
+
+        # If the document ID already doesn't have query parameters, skip it
+        if current_doc_id == normalized_doc_id:
+            # print(f"Skipping document {current_doc_id} -> {normalized_doc_id} because it already has no query parameters")
+            continue
+
+        try:
+            # Update both database and Vespa in order
+            # Database first to ensure consistency
+            update_document_id_in_database(
+                current_doc_id, normalized_doc_id, index_name
+            )
+
+            # For Vespa, we can now use the original document IDs since we're using contains matching
+            update_document_id_in_vespa(index_name, current_doc_id, normalized_doc_id)
+            updated_count += 1
+            # print(f"Finished updating document {current_doc_id} -> {normalized_doc_id}")
+        except Exception as e:
+            print(f"Failed to update document {current_doc_id}: {e}")
+
+            if isinstance(e, HTTPStatusError):
+                print(f"HTTPStatusError: {e}")
+                print(f"Response: {e.response.text}")
+                print(f"Status: {e.response.status_code}")
+                print(f"Headers: {e.response.headers}")
+                print(f"Request: {e.request.url}")
+                print(f"Request headers: {e.request.headers}")
+            # Note: Rollback is complex with copy-and-swap approach since the old document is already deleted
+            # In case of failure, manual intervention may be required
+            # Continue with other documents instead of failing the entire migration
+            continue
+
+    logger.info(f"Migration complete. Updated {updated_count} Google Drive documents")
+
+
+def downgrade() -> None:
+    # this is a one way migration, so no downgrade.
+    # It wouldn't make sense to store the extra query parameters
+    # and duplicate documents to allow a reversal.
+    pass

backend/alembic/versions/15326fcec57e_introduce_onyx_apis.py

@@ -0,0 +1,38 @@
+"""Introduce Onyx APIs
+
+Revision ID: 15326fcec57e
+Revises: 77d07dffae64
+Create Date: 2023-11-11 20:51:24.228999
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+from onyx.configs.constants import DocumentSource
+
+# revision identifiers, used by Alembic.
+revision = "15326fcec57e"
+down_revision = "77d07dffae64"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.alter_column("credential", "is_admin", new_column_name="admin_public")
+    op.add_column(
+        "document",
+        sa.Column("from_ingestion_api", sa.Boolean(), nullable=True),
+    )
+    op.alter_column(
+        "connector",
+        "source",
+        type_=sa.String(length=50),
+        existing_type=sa.Enum(DocumentSource, native_enum=False),
+        existing_nullable=False,
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("document", "from_ingestion_api")
+    op.alter_column("credential", "admin_public", new_column_name="is_admin")

backend/alembic/versions/16c37a30adf2_user_file_relationship_migration.py

@@ -0,0 +1,261 @@
+"""Migration 3: User file relationship migration
+
+Revision ID: 16c37a30adf2
+Revises: 0cd424f32b1d
+Create Date: 2025-09-22 09:47:34.175596
+
+This migration converts folder-based relationships to project-based relationships.
+It migrates persona__user_folder to persona__user_file and populates project__user_file.
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy import text
+import logging
+
+logger = logging.getLogger("alembic.runtime.migration")
+
+# revision identifiers, used by Alembic.
+revision = "16c37a30adf2"
+down_revision = "0cd424f32b1d"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    """Migrate folder-based relationships to project-based relationships."""
+
+    bind = op.get_bind()
+    inspector = sa.inspect(bind)
+
+    # === Step 1: Migrate persona__user_folder to persona__user_file ===
+    table_names = inspector.get_table_names()
+
+    if "persona__user_folder" in table_names and "user_file" in table_names:
+        user_file_columns = [col["name"] for col in inspector.get_columns("user_file")]
+        has_new_id = "new_id" in user_file_columns
+
+        if has_new_id and "folder_id" in user_file_columns:
+            logger.info(
+                "Migrating persona__user_folder relationships to persona__user_file..."
+            )
+
+            # Count relationships to migrate (asyncpg-compatible)
+            count_query = text(
+                """
+                SELECT COUNT(*)
+                FROM (
+                    SELECT DISTINCT puf.persona_id, uf.id
+                    FROM persona__user_folder puf
+                    JOIN user_file uf ON uf.folder_id = puf.user_folder_id
+                    WHERE NOT EXISTS (
+                        SELECT 1
+                        FROM persona__user_file p2
+                        WHERE p2.persona_id = puf.persona_id
+                        AND p2.user_file_id = uf.id
+                    )
+                ) AS distinct_pairs
+            """
+            )
+            to_migrate = bind.execute(count_query).scalar_one()
+
+            if to_migrate > 0:
+                logger.info(f"Creating {to_migrate} persona-file relationships...")
+
+                # Migrate in batches to avoid memory issues
+                batch_size = 10000
+                total_inserted = 0
+
+                while True:
+                    # Insert batch directly using subquery (asyncpg compatible)
+                    result = bind.execute(
+                        text(
+                            """
+                        INSERT INTO persona__user_file (persona_id, user_file_id, user_file_id_uuid)
+                        SELECT DISTINCT puf.persona_id, uf.id as file_id, uf.new_id
+                        FROM persona__user_folder puf
+                        JOIN user_file uf ON uf.folder_id = puf.user_folder_id
+                        WHERE NOT EXISTS (
+                            SELECT 1
+                            FROM persona__user_file p2
+                            WHERE p2.persona_id = puf.persona_id
+                            AND p2.user_file_id = uf.id
+                        )
+                        LIMIT :batch_size
+                    """
+                        ),
+                        {"batch_size": batch_size},
+                    )
+
+                    inserted = result.rowcount
+                    total_inserted += inserted
+
+                    if inserted < batch_size:
+                        break
+
+                    logger.info(
+                        f"  Migrated {total_inserted}/{to_migrate} relationships..."
+                    )
+
+                logger.info(
+                    f"Created {total_inserted} persona__user_file relationships"
+                )
+
+    # === Step 2: Add foreign key for chat_session.project_id ===
+    chat_session_fks = inspector.get_foreign_keys("chat_session")
+    fk_exists = any(
+        fk["name"] == "fk_chat_session_project_id" for fk in chat_session_fks
+    )
+
+    if not fk_exists:
+        logger.info("Adding foreign key constraint for chat_session.project_id...")
+        op.create_foreign_key(
+            "fk_chat_session_project_id",
+            "chat_session",
+            "user_project",
+            ["project_id"],
+            ["id"],
+        )
+        logger.info("Added foreign key constraint")
+
+    # === Step 3: Populate project__user_file from user_file.folder_id ===
+    user_file_columns = [col["name"] for col in inspector.get_columns("user_file")]
+    has_new_id = "new_id" in user_file_columns
+
+    if has_new_id and "folder_id" in user_file_columns:
+        logger.info("Populating project__user_file from folder relationships...")
+
+        # Count relationships to create
+        count_query = text(
+            """
+            SELECT COUNT(*)
+            FROM user_file uf
+            WHERE uf.folder_id IS NOT NULL
+            AND NOT EXISTS (
+                SELECT 1
+                FROM project__user_file puf
+                WHERE puf.project_id = uf.folder_id
+                AND puf.user_file_id = uf.new_id
+            )
+        """
+        )
+        to_create = bind.execute(count_query).scalar_one()
+
+        if to_create > 0:
+            logger.info(f"Creating {to_create} project-file relationships...")
+
+            # Insert in batches
+            batch_size = 10000
+            total_inserted = 0
+
+            while True:
+                result = bind.execute(
+                    text(
+                        """
+                    INSERT INTO project__user_file (project_id, user_file_id)
+                    SELECT uf.folder_id, uf.new_id
+                    FROM user_file uf
+                    WHERE uf.folder_id IS NOT NULL
+                    AND NOT EXISTS (
+                        SELECT 1
+                        FROM project__user_file puf
+                        WHERE puf.project_id = uf.folder_id
+                        AND puf.user_file_id = uf.new_id
+                    )
+                    LIMIT :batch_size
+                    ON CONFLICT (project_id, user_file_id) DO NOTHING
+                """
+                    ),
+                    {"batch_size": batch_size},
+                )
+
+                inserted = result.rowcount
+                total_inserted += inserted
+
+                if inserted < batch_size:
+                    break
+
+                logger.info(f"  Created {total_inserted}/{to_create} relationships...")
+
+            logger.info(f"Created {total_inserted} project__user_file relationships")
+
+    # === Step 4: Create index on chat_session.project_id ===
+    try:
+        indexes = [ix.get("name") for ix in inspector.get_indexes("chat_session")]
+    except Exception:
+        indexes = []
+
+    if "ix_chat_session_project_id" not in indexes:
+        logger.info("Creating index on chat_session.project_id...")
+        op.create_index(
+            "ix_chat_session_project_id", "chat_session", ["project_id"], unique=False
+        )
+        logger.info("Created index")
+
+    logger.info("Migration 3 (relationship migration) completed successfully")
+
+
+def downgrade() -> None:
+    """Remove migrated relationships and constraints."""
+
+    bind = op.get_bind()
+    inspector = sa.inspect(bind)
+
+    logger.info("Starting downgrade of relationship migration...")
+
+    # Drop index on chat_session.project_id
+    try:
+        indexes = [ix.get("name") for ix in inspector.get_indexes("chat_session")]
+        if "ix_chat_session_project_id" in indexes:
+            op.drop_index("ix_chat_session_project_id", "chat_session")
+            logger.info("Dropped index on chat_session.project_id")
+    except Exception:
+        pass
+
+    # Drop foreign key constraint
+    try:
+        chat_session_fks = inspector.get_foreign_keys("chat_session")
+        fk_exists = any(
+            fk["name"] == "fk_chat_session_project_id" for fk in chat_session_fks
+        )
+        if fk_exists:
+            op.drop_constraint(
+                "fk_chat_session_project_id", "chat_session", type_="foreignkey"
+            )
+            logger.info("Dropped foreign key constraint on chat_session.project_id")
+    except Exception:
+        pass
+
+    # Clear project__user_file relationships (but keep the table for migration 1 to handle)
+    if "project__user_file" in inspector.get_table_names():
+        result = bind.execute(text("DELETE FROM project__user_file"))
+        logger.info(f"Cleared {result.rowcount} records from project__user_file")
+
+    # Remove migrated persona__user_file relationships
+    # Only remove those that came from folder relationships
+    if all(
+        table in inspector.get_table_names()
+        for table in ["persona__user_file", "persona__user_folder", "user_file"]
+    ):
+        user_file_columns = [col["name"] for col in inspector.get_columns("user_file")]
+        if "folder_id" in user_file_columns:
+            result = bind.execute(
+                text(
+                    """
+                DELETE FROM persona__user_file puf
+                WHERE EXISTS (
+                    SELECT 1
+                    FROM user_file uf
+                    JOIN persona__user_folder puf2
+                        ON puf2.user_folder_id = uf.folder_id
+                    WHERE puf.persona_id = puf2.persona_id
+                    AND puf.user_file_id = uf.id
+                )
+            """
+                )
+            )
+            logger.info(
+                f"Removed {result.rowcount} migrated persona__user_file relationships"
+            )
+
+    logger.info("Downgrade completed successfully")

backend/alembic/versions/173cae5bba26_port_config_store.py

@@ -0,0 +1,30 @@
+"""Port Config Store
+
+Revision ID: 173cae5bba26
+Revises: e50154680a5c
+Create Date: 2024-03-19 15:30:44.425436
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.dialects import postgresql
+
+# revision identifiers, used by Alembic.
+revision = "173cae5bba26"
+down_revision = "e50154680a5c"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.create_table(
+        "key_value_store",
+        sa.Column("key", sa.String(), nullable=False),
+        sa.Column("value", postgresql.JSONB(astext_type=sa.Text()), nullable=False),
+        sa.PrimaryKeyConstraint("key"),
+    )
+
+
+def downgrade() -> None:
+    op.drop_table("key_value_store")

backend/alembic/versions/177de57c21c9_display_custom_llm_models.py

@@ -0,0 +1,60 @@
+"""display custom llm models
+
+Revision ID: 177de57c21c9
+Revises: 4ee1287bd26a
+Create Date: 2024-11-21 11:49:04.488677
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.dialects import postgresql
+from sqlalchemy import and_
+
+revision = "177de57c21c9"
+down_revision = "4ee1287bd26a"
+branch_labels = None
+depends_on = None
+depends_on = None
+
+
+def upgrade() -> None:
+    conn = op.get_bind()
+    llm_provider = sa.table(
+        "llm_provider",
+        sa.column("id", sa.Integer),
+        sa.column("provider", sa.String),
+        sa.column("model_names", postgresql.ARRAY(sa.String)),
+        sa.column("display_model_names", postgresql.ARRAY(sa.String)),
+    )
+
+    excluded_providers = ["openai", "bedrock", "anthropic", "azure"]
+
+    providers_to_update = sa.select(
+        llm_provider.c.id,
+        llm_provider.c.model_names,
+        llm_provider.c.display_model_names,
+    ).where(
+        and_(
+            ~llm_provider.c.provider.in_(excluded_providers),
+            llm_provider.c.model_names.isnot(None),
+        )
+    )
+
+    results = conn.execute(providers_to_update).fetchall()
+
+    for provider_id, model_names, display_model_names in results:
+        if display_model_names is None:
+            display_model_names = []
+
+        combined_model_names = list(set(display_model_names + model_names))
+        update_stmt = (
+            llm_provider.update()
+            .where(llm_provider.c.id == provider_id)
+            .values(display_model_names=combined_model_names)
+        )
+        conn.execute(update_stmt)
+
+
+def downgrade() -> None:
+    pass

backend/alembic/versions/1a03d2c2856b_add_indexes_to_document__tag.py

@@ -0,0 +1,28 @@
+"""Add indexes to document__tag
+
+Revision ID: 1a03d2c2856b
+Revises: 9c00a2bccb83
+Create Date: 2025-02-18 10:45:13.957807
+
+"""
+
+from alembic import op
+
+# revision identifiers, used by Alembic.
+revision = "1a03d2c2856b"
+down_revision = "9c00a2bccb83"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.create_index(
+        op.f("ix_document__tag_tag_id"),
+        "document__tag",
+        ["tag_id"],
+        unique=False,
+    )
+
+
+def downgrade() -> None:
+    op.drop_index(op.f("ix_document__tag_tag_id"), table_name="document__tag")

backend/alembic/versions/1b10e1fda030_add_additional_data_to_notifications.py

@@ -0,0 +1,27 @@
+"""add additional data to notifications
+
+Revision ID: 1b10e1fda030
+Revises: 6756efa39ada
+Create Date: 2024-10-15 19:26:44.071259
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.dialects import postgresql
+
+# revision identifiers, used by Alembic.
+revision = "1b10e1fda030"
+down_revision = "6756efa39ada"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "notification", sa.Column("additional_data", postgresql.JSONB(), nullable=True)
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("notification", "additional_data")

backend/alembic/versions/1b8206b29c5d_add_user_delete_cascades.py

@@ -0,0 +1,103 @@
+"""add_user_delete_cascades
+
+Revision ID: 1b8206b29c5d
+Revises: 35e6853a51d5
+Create Date: 2024-09-18 11:48:59.418726
+
+"""
+
+from alembic import op
+
+
+# revision identifiers, used by Alembic.
+revision = "1b8206b29c5d"
+down_revision = "35e6853a51d5"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.drop_constraint("credential_user_id_fkey", "credential", type_="foreignkey")
+    op.create_foreign_key(
+        "credential_user_id_fkey",
+        "credential",
+        "user",
+        ["user_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    op.drop_constraint("chat_session_user_id_fkey", "chat_session", type_="foreignkey")
+    op.create_foreign_key(
+        "chat_session_user_id_fkey",
+        "chat_session",
+        "user",
+        ["user_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    op.drop_constraint("chat_folder_user_id_fkey", "chat_folder", type_="foreignkey")
+    op.create_foreign_key(
+        "chat_folder_user_id_fkey",
+        "chat_folder",
+        "user",
+        ["user_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    op.drop_constraint("prompt_user_id_fkey", "prompt", type_="foreignkey")
+    op.create_foreign_key(
+        "prompt_user_id_fkey", "prompt", "user", ["user_id"], ["id"], ondelete="CASCADE"
+    )
+
+    op.drop_constraint("notification_user_id_fkey", "notification", type_="foreignkey")
+    op.create_foreign_key(
+        "notification_user_id_fkey",
+        "notification",
+        "user",
+        ["user_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    op.drop_constraint("inputprompt_user_id_fkey", "inputprompt", type_="foreignkey")
+    op.create_foreign_key(
+        "inputprompt_user_id_fkey",
+        "inputprompt",
+        "user",
+        ["user_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+
+def downgrade() -> None:
+    op.drop_constraint("credential_user_id_fkey", "credential", type_="foreignkey")
+    op.create_foreign_key(
+        "credential_user_id_fkey", "credential", "user", ["user_id"], ["id"]
+    )
+
+    op.drop_constraint("chat_session_user_id_fkey", "chat_session", type_="foreignkey")
+    op.create_foreign_key(
+        "chat_session_user_id_fkey", "chat_session", "user", ["user_id"], ["id"]
+    )
+
+    op.drop_constraint("chat_folder_user_id_fkey", "chat_folder", type_="foreignkey")
+    op.create_foreign_key(
+        "chat_folder_user_id_fkey", "chat_folder", "user", ["user_id"], ["id"]
+    )
+
+    op.drop_constraint("prompt_user_id_fkey", "prompt", type_="foreignkey")
+    op.create_foreign_key("prompt_user_id_fkey", "prompt", "user", ["user_id"], ["id"])
+
+    op.drop_constraint("notification_user_id_fkey", "notification", type_="foreignkey")
+    op.create_foreign_key(
+        "notification_user_id_fkey", "notification", "user", ["user_id"], ["id"]
+    )
+
+    op.drop_constraint("inputprompt_user_id_fkey", "inputprompt", type_="foreignkey")
+    op.create_foreign_key(
+        "inputprompt_user_id_fkey", "inputprompt", "user", ["user_id"], ["id"]
+    )

backend/alembic/versions/1f60f60c3401_embedding_model_search_settings.py

@@ -0,0 +1,135 @@
+"""embedding model -> search settings
+
+Revision ID: 1f60f60c3401
+Revises: f17bf3b0d9f1
+Create Date: 2024-08-25 12:39:51.731632
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.dialects import postgresql
+
+from onyx.configs.chat_configs import NUM_POSTPROCESSED_RESULTS
+
+# revision identifiers, used by Alembic.
+revision = "1f60f60c3401"
+down_revision = "f17bf3b0d9f1"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.drop_constraint(
+        "index_attempt__embedding_model_fk", "index_attempt", type_="foreignkey"
+    )
+    # Rename the table
+    op.rename_table("embedding_model", "search_settings")
+
+    # Add new columns
+    op.add_column(
+        "search_settings",
+        sa.Column(
+            "multipass_indexing", sa.Boolean(), nullable=False, server_default="false"
+        ),
+    )
+    op.add_column(
+        "search_settings",
+        sa.Column(
+            "multilingual_expansion",
+            postgresql.ARRAY(sa.String()),
+            nullable=False,
+            server_default="{}",
+        ),
+    )
+    op.add_column(
+        "search_settings",
+        sa.Column(
+            "disable_rerank_for_streaming",
+            sa.Boolean(),
+            nullable=False,
+            server_default="false",
+        ),
+    )
+    op.add_column(
+        "search_settings", sa.Column("rerank_model_name", sa.String(), nullable=True)
+    )
+    op.add_column(
+        "search_settings", sa.Column("rerank_provider_type", sa.String(), nullable=True)
+    )
+    op.add_column(
+        "search_settings", sa.Column("rerank_api_key", sa.String(), nullable=True)
+    )
+    op.add_column(
+        "search_settings",
+        sa.Column(
+            "num_rerank",
+            sa.Integer(),
+            nullable=False,
+            server_default=str(NUM_POSTPROCESSED_RESULTS),
+        ),
+    )
+
+    # Add the new column as nullable initially
+    op.add_column(
+        "index_attempt", sa.Column("search_settings_id", sa.Integer(), nullable=True)
+    )
+
+    # Populate the new column with data from the existing embedding_model_id
+    op.execute("UPDATE index_attempt SET search_settings_id = embedding_model_id")
+
+    # Create the foreign key constraint
+    op.create_foreign_key(
+        "fk_index_attempt_search_settings",
+        "index_attempt",
+        "search_settings",
+        ["search_settings_id"],
+        ["id"],
+    )
+
+    # Make the new column non-nullable
+    op.alter_column("index_attempt", "search_settings_id", nullable=False)
+
+    # Drop the old embedding_model_id column
+    op.drop_column("index_attempt", "embedding_model_id")
+
+
+def downgrade() -> None:
+    # Add back the embedding_model_id column
+    op.add_column(
+        "index_attempt", sa.Column("embedding_model_id", sa.Integer(), nullable=True)
+    )
+
+    # Populate the old column with data from search_settings_id
+    op.execute("UPDATE index_attempt SET embedding_model_id = search_settings_id")
+
+    # Make the old column non-nullable
+    op.alter_column("index_attempt", "embedding_model_id", nullable=False)
+
+    # Drop the foreign key constraint
+    op.drop_constraint(
+        "fk_index_attempt_search_settings", "index_attempt", type_="foreignkey"
+    )
+
+    # Drop the new search_settings_id column
+    op.drop_column("index_attempt", "search_settings_id")
+
+    # Rename the table back
+    op.rename_table("search_settings", "embedding_model")
+
+    # Remove added columns
+    op.drop_column("embedding_model", "num_rerank")
+    op.drop_column("embedding_model", "rerank_api_key")
+    op.drop_column("embedding_model", "rerank_provider_type")
+    op.drop_column("embedding_model", "rerank_model_name")
+    op.drop_column("embedding_model", "disable_rerank_for_streaming")
+    op.drop_column("embedding_model", "multilingual_expansion")
+    op.drop_column("embedding_model", "multipass_indexing")
+
+    op.create_foreign_key(
+        "index_attempt__embedding_model_fk",
+        "index_attempt",
+        "embedding_model",
+        ["embedding_model_id"],
+        ["id"],
+    )

backend/alembic/versions/213fd978c6d8_notifications.py

@@ -0,0 +1,45 @@
+"""notifications
+
+Revision ID: 213fd978c6d8
+Revises: 5fc1f54cc252
+Create Date: 2024-08-10 11:13:36.070790
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "213fd978c6d8"
+down_revision = "5fc1f54cc252"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.create_table(
+        "notification",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column(
+            "notif_type",
+            sa.String(),
+            nullable=False,
+        ),
+        sa.Column(
+            "user_id",
+            sa.UUID(),
+            nullable=True,
+        ),
+        sa.Column("dismissed", sa.Boolean(), nullable=False),
+        sa.Column("last_shown", sa.DateTime(timezone=True), nullable=False),
+        sa.Column("first_shown", sa.DateTime(timezone=True), nullable=False),
+        sa.ForeignKeyConstraint(
+            ["user_id"],
+            ["user.id"],
+        ),
+        sa.PrimaryKeyConstraint("id"),
+    )
+
+
+def downgrade() -> None:
+    op.drop_table("notification")

backend/alembic/versions/238b84885828_add_foreign_key_to_user__external_user_.py

@@ -0,0 +1,45 @@
+"""Add foreign key to user__external_user_group_id
+
+Revision ID: 238b84885828
+Revises: a7688ab35c45
+Create Date: 2025-05-19 17:15:33.424584
+
+"""
+
+from alembic import op
+
+
+# revision identifiers, used by Alembic.
+revision = "238b84885828"
+down_revision = "a7688ab35c45"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # First, clean up any entries that don't have a valid cc_pair_id
+    op.execute(
+        """
+        DELETE FROM user__external_user_group_id
+        WHERE cc_pair_id NOT IN (SELECT id FROM connector_credential_pair)
+        """
+    )
+
+    # Add foreign key constraint with cascade delete
+    op.create_foreign_key(
+        "fk_user__external_user_group_id_cc_pair_id",
+        "user__external_user_group_id",
+        "connector_credential_pair",
+        ["cc_pair_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+
+def downgrade() -> None:
+    # Drop the foreign key constraint
+    op.drop_constraint(
+        "fk_user__external_user_group_id_cc_pair_id",
+        "user__external_user_group_id",
+        type_="foreignkey",
+    )

backend/alembic/versions/23957775e5f5_remove_feedback_foreignkey_constraint.py

@@ -0,0 +1,87 @@
+"""remove-feedback-foreignkey-constraint
+
+Revision ID: 23957775e5f5
+Revises: bc9771dccadf
+Create Date: 2024-06-27 16:04:51.480437
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "23957775e5f5"
+down_revision = "bc9771dccadf"
+branch_labels = None  # type: ignore
+depends_on = None  # type: ignore
+
+
+def upgrade() -> None:
+    op.drop_constraint(
+        "chat_feedback__chat_message_fk", "chat_feedback", type_="foreignkey"
+    )
+    op.create_foreign_key(
+        "chat_feedback__chat_message_fk",
+        "chat_feedback",
+        "chat_message",
+        ["chat_message_id"],
+        ["id"],
+        ondelete="SET NULL",
+    )
+    op.alter_column(
+        "chat_feedback", "chat_message_id", existing_type=sa.Integer(), nullable=True
+    )
+    op.drop_constraint(
+        "document_retrieval_feedback__chat_message_fk",
+        "document_retrieval_feedback",
+        type_="foreignkey",
+    )
+    op.create_foreign_key(
+        "document_retrieval_feedback__chat_message_fk",
+        "document_retrieval_feedback",
+        "chat_message",
+        ["chat_message_id"],
+        ["id"],
+        ondelete="SET NULL",
+    )
+    op.alter_column(
+        "document_retrieval_feedback",
+        "chat_message_id",
+        existing_type=sa.Integer(),
+        nullable=True,
+    )
+
+
+def downgrade() -> None:
+    op.alter_column(
+        "chat_feedback", "chat_message_id", existing_type=sa.Integer(), nullable=False
+    )
+    op.drop_constraint(
+        "chat_feedback__chat_message_fk", "chat_feedback", type_="foreignkey"
+    )
+    op.create_foreign_key(
+        "chat_feedback__chat_message_fk",
+        "chat_feedback",
+        "chat_message",
+        ["chat_message_id"],
+        ["id"],
+    )
+
+    op.alter_column(
+        "document_retrieval_feedback",
+        "chat_message_id",
+        existing_type=sa.Integer(),
+        nullable=False,
+    )
+    op.drop_constraint(
+        "document_retrieval_feedback__chat_message_fk",
+        "document_retrieval_feedback",
+        type_="foreignkey",
+    )
+    op.create_foreign_key(
+        "document_retrieval_feedback__chat_message_fk",
+        "document_retrieval_feedback",
+        "chat_message",
+        ["chat_message_id"],
+        ["id"],
+    )

backend/alembic/versions/2666d766cb9b_google_oauth2.py

@@ -5,6 +5,7 @@ Revises: 6d387b3196c2
 Create Date: 2023-05-05 15:49:35.716016
 
 """
+
 import fastapi_users_db_sqlalchemy
 import sqlalchemy as sa
 from alembic import op
@@ -13,8 +14,8 @@ from alembic import op
 # revision identifiers, used by Alembic.
 revision = "2666d766cb9b"
 down_revision = "6d387b3196c2"
-branch_labels = None
-depends_on = None
+branch_labels: None = None
+depends_on: None = None
 
 
 def upgrade() -> None:

backend/alembic/versions/26b931506ecb_default_chosen_assistants_to_none.py

@@ -0,0 +1,69 @@
+"""default chosen assistants to none
+
+Revision ID: 26b931506ecb
+Revises: 2daa494a0851
+Create Date: 2024-11-12 13:23:29.858995
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.dialects import postgresql
+
+# revision identifiers, used by Alembic.
+revision = "26b931506ecb"
+down_revision = "2daa494a0851"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "user", sa.Column("chosen_assistants_new", postgresql.JSONB(), nullable=True)
+    )
+
+    op.execute(
+        """
+    UPDATE "user"
+    SET chosen_assistants_new =
+        CASE
+            WHEN chosen_assistants = '[-2, -1, 0]' THEN NULL
+            ELSE chosen_assistants
+        END
+    """
+    )
+
+    op.drop_column("user", "chosen_assistants")
+
+    op.alter_column(
+        "user", "chosen_assistants_new", new_column_name="chosen_assistants"
+    )
+
+
+def downgrade() -> None:
+    op.add_column(
+        "user",
+        sa.Column(
+            "chosen_assistants_old",
+            postgresql.JSONB(),
+            nullable=False,
+            server_default="[-2, -1, 0]",
+        ),
+    )
+
+    op.execute(
+        """
+    UPDATE "user"
+    SET chosen_assistants_old =
+        CASE
+            WHEN chosen_assistants IS NULL THEN '[-2, -1, 0]'::jsonb
+            ELSE chosen_assistants
+        END
+    """
+    )
+
+    op.drop_column("user", "chosen_assistants")
+
+    op.alter_column(
+        "user", "chosen_assistants_old", new_column_name="chosen_assistants"
+    )

backend/alembic/versions/27c6ecc08586_permission_framework.py

@@ -5,6 +5,7 @@ Revises: 2666d766cb9b
 Create Date: 2023-05-24 18:45:17.244495
 
 """
+
 import fastapi_users_db_sqlalchemy
 import sqlalchemy as sa
 from alembic import op
@@ -13,8 +14,8 @@ from sqlalchemy.dialects import postgresql
 # revision identifiers, used by Alembic.
 revision = "27c6ecc08586"
 down_revision = "2666d766cb9b"
-branch_labels = None
-depends_on = None
+branch_labels: None = None
+depends_on: None = None
 
 
 def upgrade() -> None:
@@ -143,31 +144,58 @@ def upgrade() -> None:
 
 def downgrade() -> None:
     op.execute("TRUNCATE TABLE index_attempt")
-    op.add_column(
-        "index_attempt",
-        sa.Column("input_type", sa.VARCHAR(), autoincrement=False, nullable=False),
-    )
-    op.add_column(
-        "index_attempt",
-        sa.Column("source", sa.VARCHAR(), autoincrement=False, nullable=False),
-    )
-    op.add_column(
-        "index_attempt",
-        sa.Column(
-            "connector_specific_config",
-            postgresql.JSONB(astext_type=sa.Text()),
-            autoincrement=False,
-            nullable=False,
-        ),
-    )
-    op.drop_constraint(
-        "fk_index_attempt_credential_id", "index_attempt", type_="foreignkey"
-    )
-    op.drop_constraint(
-        "fk_index_attempt_connector_id", "index_attempt", type_="foreignkey"
-    )
-    op.drop_column("index_attempt", "credential_id")
-    op.drop_column("index_attempt", "connector_id")
-    op.drop_table("connector_credential_pair")
-    op.drop_table("credential")
-    op.drop_table("connector")
+    conn = op.get_bind()
+    inspector = sa.inspect(conn)
+    existing_columns = {col["name"] for col in inspector.get_columns("index_attempt")}
+
+    if "input_type" not in existing_columns:
+        op.add_column(
+            "index_attempt",
+            sa.Column("input_type", sa.VARCHAR(), autoincrement=False, nullable=False),
+        )
+
+    if "source" not in existing_columns:
+        op.add_column(
+            "index_attempt",
+            sa.Column("source", sa.VARCHAR(), autoincrement=False, nullable=False),
+        )
+
+    if "connector_specific_config" not in existing_columns:
+        op.add_column(
+            "index_attempt",
+            sa.Column(
+                "connector_specific_config",
+                postgresql.JSONB(astext_type=sa.Text()),
+                autoincrement=False,
+                nullable=False,
+            ),
+        )
+
+    # Check if the constraint exists before dropping
+    constraints = inspector.get_foreign_keys("index_attempt")
+
+    if any(
+        constraint["name"] == "fk_index_attempt_credential_id"
+        for constraint in constraints
+    ):
+        op.drop_constraint(
+            "fk_index_attempt_credential_id", "index_attempt", type_="foreignkey"
+        )
+
+    if any(
+        constraint["name"] == "fk_index_attempt_connector_id"
+        for constraint in constraints
+    ):
+        op.drop_constraint(
+            "fk_index_attempt_connector_id", "index_attempt", type_="foreignkey"
+        )
+
+    if "credential_id" in existing_columns:
+        op.drop_column("index_attempt", "credential_id")
+
+    if "connector_id" in existing_columns:
+        op.drop_column("index_attempt", "connector_id")
+
+    op.execute("DROP TABLE IF EXISTS connector_credential_pair CASCADE")
+    op.execute("DROP TABLE IF EXISTS credential CASCADE")
+    op.execute("DROP TABLE IF EXISTS connector CASCADE")

backend/alembic/versions/2955778aa44c_add_chunk_count_to_document.py

@@ -0,0 +1,25 @@
+"""add chunk count to document
+
+Revision ID: 2955778aa44c
+Revises: c0aab6edb6dd
+Create Date: 2025-01-04 11:39:43.268612
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "2955778aa44c"
+down_revision = "c0aab6edb6dd"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column("document", sa.Column("chunk_count", sa.Integer(), nullable=True))
+
+
+def downgrade() -> None:
+    op.drop_column("document", "chunk_count")

backend/alembic/versions/2b75d0a8ffcb_user_file_schema_cleanup.py

@@ -0,0 +1,228 @@
+"""Migration 6: User file schema cleanup
+
+Revision ID: 2b75d0a8ffcb
+Revises: 3a78dba1080a
+Create Date: 2025-09-22 10:09:26.375377
+
+This migration removes legacy columns and tables after data migration is complete.
+It should only be run after verifying all data has been successfully migrated.
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy import text
+import logging
+import fastapi_users_db_sqlalchemy
+
+logger = logging.getLogger("alembic.runtime.migration")
+
+# revision identifiers, used by Alembic.
+revision = "2b75d0a8ffcb"
+down_revision = "3a78dba1080a"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    """Remove legacy columns and tables."""
+
+    bind = op.get_bind()
+    inspector = sa.inspect(bind)
+
+    logger.info("Starting schema cleanup...")
+
+    # === Step 1: Verify data migration is complete ===
+    logger.info("Verifying data migration completion...")
+
+    # Check if any chat sessions still have folder_id references
+    chat_session_columns = [
+        col["name"] for col in inspector.get_columns("chat_session")
+    ]
+    if "folder_id" in chat_session_columns:
+        orphaned_count = bind.execute(
+            text(
+                """
+            SELECT COUNT(*) FROM chat_session
+            WHERE folder_id IS NOT NULL AND project_id IS NULL
+        """
+            )
+        ).scalar_one()
+
+        if orphaned_count > 0:
+            logger.warning(
+                f"WARNING: {orphaned_count} chat_session records still have "
+                f"folder_id without project_id. Proceeding anyway."
+            )
+
+    # === Step 2: Drop chat_session.folder_id ===
+    if "folder_id" in chat_session_columns:
+        logger.info("Dropping chat_session.folder_id...")
+
+        # Drop foreign key constraint first
+        op.execute(
+            "ALTER TABLE chat_session DROP CONSTRAINT IF EXISTS chat_session_chat_folder_fk"
+        )
+        op.execute(
+            "ALTER TABLE chat_session DROP CONSTRAINT IF EXISTS chat_session_folder_fk"
+        )
+
+        # Drop the column
+        op.drop_column("chat_session", "folder_id")
+        logger.info("Dropped chat_session.folder_id")
+
+    # === Step 3: Drop persona__user_folder table ===
+    if "persona__user_folder" in inspector.get_table_names():
+        logger.info("Dropping persona__user_folder table...")
+
+        # Check for any remaining data
+        remaining = bind.execute(
+            text("SELECT COUNT(*) FROM persona__user_folder")
+        ).scalar_one()
+
+        if remaining > 0:
+            logger.warning(
+                f"WARNING: Dropping persona__user_folder with {remaining} records"
+            )
+
+        op.drop_table("persona__user_folder")
+        logger.info("Dropped persona__user_folder table")
+
+    # === Step 4: Drop chat_folder table ===
+    if "chat_folder" in inspector.get_table_names():
+        logger.info("Dropping chat_folder table...")
+
+        # Check for any remaining data
+        remaining = bind.execute(text("SELECT COUNT(*) FROM chat_folder")).scalar_one()
+
+        if remaining > 0:
+            logger.warning(f"WARNING: Dropping chat_folder with {remaining} records")
+
+        op.drop_table("chat_folder")
+        logger.info("Dropped chat_folder table")
+
+    # === Step 5: Drop user_file legacy columns ===
+    user_file_columns = [col["name"] for col in inspector.get_columns("user_file")]
+
+    # Drop folder_id
+    if "folder_id" in user_file_columns:
+        logger.info("Dropping user_file.folder_id...")
+        op.drop_column("user_file", "folder_id")
+        logger.info("Dropped user_file.folder_id")
+
+    # Drop cc_pair_id (already handled in migration 5, but be sure)
+    if "cc_pair_id" in user_file_columns:
+        logger.info("Dropping user_file.cc_pair_id...")
+
+        # Drop any remaining foreign key constraints
+        bind.execute(
+            text(
+                """
+            DO $$
+            DECLARE r RECORD;
+            BEGIN
+              FOR r IN (
+                SELECT conname
+                FROM pg_constraint c
+                JOIN pg_class t ON c.conrelid = t.oid
+                WHERE c.contype = 'f'
+                  AND t.relname = 'user_file'
+                  AND EXISTS (
+                    SELECT 1 FROM pg_attribute a
+                    WHERE a.attrelid = t.oid
+                    AND a.attname = 'cc_pair_id'
+                  )
+              ) LOOP
+                EXECUTE format('ALTER TABLE user_file DROP CONSTRAINT IF EXISTS %I', r.conname);
+              END LOOP;
+            END$$;
+        """
+            )
+        )
+
+        op.drop_column("user_file", "cc_pair_id")
+        logger.info("Dropped user_file.cc_pair_id")
+
+    # === Step 6: Clean up any remaining constraints ===
+    logger.info("Cleaning up remaining constraints...")
+
+    # Drop any unique constraints on removed columns
+    op.execute(
+        "ALTER TABLE user_file DROP CONSTRAINT IF EXISTS user_file_cc_pair_id_key"
+    )
+
+    logger.info("Migration 6 (schema cleanup) completed successfully")
+    logger.info("Legacy schema has been fully removed")
+
+
+def downgrade() -> None:
+    """Recreate dropped columns and tables (structure only, no data)."""
+
+    bind = op.get_bind()
+    inspector = sa.inspect(bind)
+
+    logger.warning("Downgrading schema cleanup - recreating structure only, no data!")
+
+    # Recreate user_file columns
+    if "user_file" in inspector.get_table_names():
+        columns = [col["name"] for col in inspector.get_columns("user_file")]
+
+        if "cc_pair_id" not in columns:
+            op.add_column(
+                "user_file", sa.Column("cc_pair_id", sa.Integer(), nullable=True)
+            )
+
+        if "folder_id" not in columns:
+            op.add_column(
+                "user_file", sa.Column("folder_id", sa.Integer(), nullable=True)
+            )
+
+    # Recreate persona__user_folder table
+    if "persona__user_folder" not in inspector.get_table_names():
+        op.create_table(
+            "persona__user_folder",
+            sa.Column("persona_id", sa.Integer(), nullable=False),
+            sa.Column("user_folder_id", sa.Integer(), nullable=False),
+            sa.PrimaryKeyConstraint("persona_id", "user_folder_id"),
+            sa.ForeignKeyConstraint(["persona_id"], ["persona.id"]),
+            sa.ForeignKeyConstraint(["user_folder_id"], ["user_project.id"]),
+        )
+
+    # Recreate chat_folder table and related structures
+    if "chat_folder" not in inspector.get_table_names():
+        op.create_table(
+            "chat_folder",
+            sa.Column("id", sa.Integer(), nullable=False),
+            sa.Column(
+                "user_id",
+                fastapi_users_db_sqlalchemy.generics.GUID(),
+                nullable=True,
+            ),
+            sa.Column("name", sa.String(), nullable=True),
+            sa.Column("display_priority", sa.Integer(), nullable=False),
+            sa.ForeignKeyConstraint(
+                ["user_id"],
+                ["user.id"],
+                name="chat_folder_user_id_fkey",
+            ),
+            sa.PrimaryKeyConstraint("id"),
+        )
+
+    # Add folder_id back to chat_session
+    if "chat_session" in inspector.get_table_names():
+        columns = [col["name"] for col in inspector.get_columns("chat_session")]
+        if "folder_id" not in columns:
+            op.add_column(
+                "chat_session", sa.Column("folder_id", sa.Integer(), nullable=True)
+            )
+
+            # Add foreign key if chat_folder exists
+            if "chat_folder" in inspector.get_table_names():
+                op.create_foreign_key(
+                    "chat_session_chat_folder_fk",
+                    "chat_session",
+                    "chat_folder",
+                    ["folder_id"],
+                    ["id"],
+                )
+
+    logger.info("Downgrade completed - structure recreated but data is lost")

backend/alembic/versions/2cdeff6d8c93_set_built_in_to_default.py

@@ -0,0 +1,33 @@
+"""set built in to default
+
+Revision ID: 2cdeff6d8c93
+Revises: f5437cc136c5
+Create Date: 2025-02-11 14:57:51.308775
+
+"""
+
+from alembic import op
+
+
+# revision identifiers, used by Alembic.
+revision = "2cdeff6d8c93"
+down_revision = "f5437cc136c5"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # Prior to this migration / point in the codebase history,
+    # built in personas were implicitly treated as default personas (with no option to change this)
+    # This migration makes that explicit
+    op.execute(
+        """
+        UPDATE persona
+        SET is_default_persona = TRUE
+        WHERE builtin_persona = TRUE
+    """
+    )
+
+
+def downgrade() -> None:
+    pass

backend/alembic/versions/2d2304e27d8c_add_above_below_to_persona.py

@@ -0,0 +1,33 @@
+"""Add Above Below to Persona
+
+Revision ID: 2d2304e27d8c
+Revises: 4b08d97e175a
+Create Date: 2024-08-21 19:15:15.762948
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "2d2304e27d8c"
+down_revision = "4b08d97e175a"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.add_column("persona", sa.Column("chunks_above", sa.Integer(), nullable=True))
+    op.add_column("persona", sa.Column("chunks_below", sa.Integer(), nullable=True))
+
+    op.execute(
+        "UPDATE persona SET chunks_above = 1, chunks_below = 1 WHERE chunks_above IS NULL AND chunks_below IS NULL"
+    )
+
+    op.alter_column("persona", "chunks_above", nullable=False)
+    op.alter_column("persona", "chunks_below", nullable=False)
+
+
+def downgrade() -> None:
+    op.drop_column("persona", "chunks_below")
+    op.drop_column("persona", "chunks_above")

backend/alembic/versions/2daa494a0851_add_group_sync_time.py

@@ -0,0 +1,31 @@
+"""add-group-sync-time
+
+Revision ID: 2daa494a0851
+Revises: c0fd6e4da83a
+Create Date: 2024-11-11 10:57:22.991157
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "2daa494a0851"
+down_revision = "c0fd6e4da83a"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "connector_credential_pair",
+        sa.Column(
+            "last_time_external_group_sync",
+            sa.DateTime(timezone=True),
+            nullable=True,
+        ),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("connector_credential_pair", "last_time_external_group_sync")

backend/alembic/versions/2f80c6a2550f_add_chat_session_specific_temperature_.py

@@ -0,0 +1,37 @@
+"""add chat session specific temperature override
+
+Revision ID: 2f80c6a2550f
+Revises: 33ea50e88f24
+Create Date: 2025-01-31 10:30:27.289646
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "2f80c6a2550f"
+down_revision = "33ea50e88f24"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "chat_session", sa.Column("temperature_override", sa.Float(), nullable=True)
+    )
+    op.add_column(
+        "user",
+        sa.Column(
+            "temperature_override_enabled",
+            sa.Boolean(),
+            nullable=False,
+            server_default=sa.false(),
+        ),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("chat_session", "temperature_override")
+    op.drop_column("user", "temperature_override_enabled")

backend/alembic/versions/2f95e36923e6_add_indexing_coordination.py

@@ -0,0 +1,115 @@
+"""add_indexing_coordination
+
+Revision ID: 2f95e36923e6
+Revises: 0816326d83aa
+Create Date: 2025-07-10 16:17:57.762182
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "2f95e36923e6"
+down_revision = "0816326d83aa"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # Add database-based coordination fields (replacing Redis fencing)
+    op.add_column(
+        "index_attempt", sa.Column("celery_task_id", sa.String(), nullable=True)
+    )
+    op.add_column(
+        "index_attempt",
+        sa.Column(
+            "cancellation_requested",
+            sa.Boolean(),
+            nullable=False,
+            server_default="false",
+        ),
+    )
+
+    # Add batch coordination fields (replacing FileStore state)
+    op.add_column(
+        "index_attempt", sa.Column("total_batches", sa.Integer(), nullable=True)
+    )
+    op.add_column(
+        "index_attempt",
+        sa.Column(
+            "completed_batches", sa.Integer(), nullable=False, server_default="0"
+        ),
+    )
+    op.add_column(
+        "index_attempt",
+        sa.Column(
+            "total_failures_batch_level",
+            sa.Integer(),
+            nullable=False,
+            server_default="0",
+        ),
+    )
+    op.add_column(
+        "index_attempt",
+        sa.Column("total_chunks", sa.Integer(), nullable=False, server_default="0"),
+    )
+
+    # Progress tracking for stall detection
+    op.add_column(
+        "index_attempt",
+        sa.Column("last_progress_time", sa.DateTime(timezone=True), nullable=True),
+    )
+    op.add_column(
+        "index_attempt",
+        sa.Column(
+            "last_batches_completed_count",
+            sa.Integer(),
+            nullable=False,
+            server_default="0",
+        ),
+    )
+
+    # Heartbeat tracking for worker liveness detection
+    op.add_column(
+        "index_attempt",
+        sa.Column(
+            "heartbeat_counter", sa.Integer(), nullable=False, server_default="0"
+        ),
+    )
+    op.add_column(
+        "index_attempt",
+        sa.Column(
+            "last_heartbeat_value", sa.Integer(), nullable=False, server_default="0"
+        ),
+    )
+    op.add_column(
+        "index_attempt",
+        sa.Column("last_heartbeat_time", sa.DateTime(timezone=True), nullable=True),
+    )
+
+    # Add index for coordination queries
+    op.create_index(
+        "ix_index_attempt_active_coordination",
+        "index_attempt",
+        ["connector_credential_pair_id", "search_settings_id", "status"],
+    )
+
+
+def downgrade() -> None:
+    # Remove the new index
+    op.drop_index("ix_index_attempt_active_coordination", table_name="index_attempt")
+
+    # Remove the new columns
+    op.drop_column("index_attempt", "last_batches_completed_count")
+    op.drop_column("index_attempt", "last_progress_time")
+    op.drop_column("index_attempt", "last_heartbeat_time")
+    op.drop_column("index_attempt", "last_heartbeat_value")
+    op.drop_column("index_attempt", "heartbeat_counter")
+    op.drop_column("index_attempt", "total_chunks")
+    op.drop_column("index_attempt", "total_failures_batch_level")
+    op.drop_column("index_attempt", "completed_batches")
+    op.drop_column("index_attempt", "total_batches")
+    op.drop_column("index_attempt", "cancellation_requested")
+    op.drop_column("index_attempt", "celery_task_id")

backend/alembic/versions/30c1d5744104_persona_datetime_aware.py

@@ -0,0 +1,38 @@
+"""Persona Datetime Aware
+
+Revision ID: 30c1d5744104
+Revises: 7f99be1cb9f5
+Create Date: 2023-10-16 23:21:01.283424
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "30c1d5744104"
+down_revision = "7f99be1cb9f5"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.add_column("persona", sa.Column("datetime_aware", sa.Boolean(), nullable=True))
+    op.execute("UPDATE persona SET datetime_aware = TRUE")
+    op.alter_column("persona", "datetime_aware", nullable=False)
+    op.create_index(
+        "_default_persona_name_idx",
+        "persona",
+        ["name"],
+        unique=True,
+        postgresql_where=sa.text("default_persona = true"),
+    )
+
+
+def downgrade() -> None:
+    op.drop_index(
+        "_default_persona_name_idx",
+        table_name="persona",
+        postgresql_where=sa.text("default_persona = true"),
+    )
+    op.drop_column("persona", "datetime_aware")

backend/alembic/versions/325975216eb3_add_icon_color_and_icon_shape_to_persona.py

@@ -0,0 +1,71 @@
+"""Add icon_color and icon_shape to Persona
+
+Revision ID: 325975216eb3
+Revises: 91ffac7e65b3
+Create Date: 2024-07-24 21:29:31.784562
+
+"""
+
+import random
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.sql import table, column, select
+
+# revision identifiers, used by Alembic.
+revision = "325975216eb3"
+down_revision = "91ffac7e65b3"
+branch_labels: None = None
+depends_on: None = None
+
+
+colorOptions = [
+    "#FF6FBF",
+    "#6FB1FF",
+    "#B76FFF",
+    "#FFB56F",
+    "#6FFF8D",
+    "#FF6F6F",
+    "#6FFFFF",
+]
+
+
+# Function to generate a random shape ensuring at least 3 of the middle 4 squares are filled
+def generate_random_shape() -> int:
+    center_squares = [12, 10, 6, 14, 13, 11, 7, 15]
+    center_fill = random.choice(center_squares)
+    remaining_squares = [i for i in range(16) if not (center_fill & (1 << i))]
+    random.shuffle(remaining_squares)
+    for i in range(10 - bin(center_fill).count("1")):
+        center_fill |= 1 << remaining_squares[i]
+    return center_fill
+
+
+def upgrade() -> None:
+    op.add_column("persona", sa.Column("icon_color", sa.String(), nullable=True))
+    op.add_column("persona", sa.Column("icon_shape", sa.Integer(), nullable=True))
+    op.add_column("persona", sa.Column("uploaded_image_id", sa.String(), nullable=True))
+
+    persona = table(
+        "persona",
+        column("id", sa.Integer),
+        column("icon_color", sa.String),
+        column("icon_shape", sa.Integer),
+    )
+
+    conn = op.get_bind()
+    personas = conn.execute(select(persona.c.id))
+
+    for persona_id in personas:
+        random_color = random.choice(colorOptions)
+        random_shape = generate_random_shape()
+        conn.execute(
+            persona.update()
+            .where(persona.c.id == persona_id[0])
+            .values(icon_color=random_color, icon_shape=random_shape)
+        )
+
+
+def downgrade() -> None:
+    op.drop_column("persona", "icon_shape")
+    op.drop_column("persona", "uploaded_image_id")
+    op.drop_column("persona", "icon_color")

backend/alembic/versions/33cb72ea4d80_single_tool_call_per_message.py

@@ -0,0 +1,51 @@
+"""single tool call per message
+
+Revision ID: 33cb72ea4d80
+Revises: 5b29123cd710
+Create Date: 2024-11-01 12:51:01.535003
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "33cb72ea4d80"
+down_revision = "5b29123cd710"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # Step 1: Delete extraneous ToolCall entries
+    # Keep only the ToolCall with the smallest 'id' for each 'message_id'
+    op.execute(
+        sa.text(
+            """
+            DELETE FROM tool_call
+            WHERE id NOT IN (
+                SELECT MIN(id)
+                FROM tool_call
+                WHERE message_id IS NOT NULL
+                GROUP BY message_id
+            );
+        """
+        )
+    )
+
+    # Step 2: Add a unique constraint on message_id
+    op.create_unique_constraint(
+        constraint_name="uq_tool_call_message_id",
+        table_name="tool_call",
+        columns=["message_id"],
+    )
+
+
+def downgrade() -> None:
+    # Step 1: Drop the unique constraint on message_id
+    op.drop_constraint(
+        constraint_name="uq_tool_call_message_id",
+        table_name="tool_call",
+        type_="unique",
+    )

backend/alembic/versions/33ea50e88f24_foreign_key_input_prompts.py

@@ -0,0 +1,81 @@
+"""foreign key input prompts
+
+Revision ID: 33ea50e88f24
+Revises: a6df6b88ef81
+Create Date: 2025-01-29 10:54:22.141765
+
+"""
+
+from alembic import op
+
+
+# revision identifiers, used by Alembic.
+revision = "33ea50e88f24"
+down_revision = "a6df6b88ef81"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # Safely drop constraints if exists
+    op.execute(
+        """
+        ALTER TABLE inputprompt__user
+        DROP CONSTRAINT IF EXISTS inputprompt__user_input_prompt_id_fkey
+        """
+    )
+    op.execute(
+        """
+        ALTER TABLE inputprompt__user
+        DROP CONSTRAINT IF EXISTS inputprompt__user_user_id_fkey
+        """
+    )
+
+    # Recreate with ON DELETE CASCADE
+    op.create_foreign_key(
+        "inputprompt__user_input_prompt_id_fkey",
+        "inputprompt__user",
+        "inputprompt",
+        ["input_prompt_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    op.create_foreign_key(
+        "inputprompt__user_user_id_fkey",
+        "inputprompt__user",
+        "user",
+        ["user_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+
+def downgrade() -> None:
+    # Drop the new FKs with ondelete
+    op.drop_constraint(
+        "inputprompt__user_input_prompt_id_fkey",
+        "inputprompt__user",
+        type_="foreignkey",
+    )
+    op.drop_constraint(
+        "inputprompt__user_user_id_fkey",
+        "inputprompt__user",
+        type_="foreignkey",
+    )
+
+    # Recreate them without cascading
+    op.create_foreign_key(
+        "inputprompt__user_input_prompt_id_fkey",
+        "inputprompt__user",
+        "inputprompt",
+        ["input_prompt_id"],
+        ["id"],
+    )
+    op.create_foreign_key(
+        "inputprompt__user_user_id_fkey",
+        "inputprompt__user",
+        "user",
+        ["user_id"],
+        ["id"],
+    )

backend/alembic/versions/351faebd379d_add_curator_fields.py

@@ -0,0 +1,91 @@
+"""Add curator fields
+
+Revision ID: 351faebd379d
+Revises: ee3f4b47fad5
+Create Date: 2024-08-15 22:37:08.397052
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "351faebd379d"
+down_revision = "ee3f4b47fad5"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    # Add is_curator column to User__UserGroup table
+    op.add_column(
+        "user__user_group",
+        sa.Column("is_curator", sa.Boolean(), nullable=False, server_default="false"),
+    )
+
+    # Use batch mode to modify the enum type
+    with op.batch_alter_table("user", schema=None) as batch_op:
+        batch_op.alter_column(  # type: ignore[attr-defined]
+            "role",
+            type_=sa.Enum(
+                "BASIC",
+                "ADMIN",
+                "CURATOR",
+                "GLOBAL_CURATOR",
+                name="userrole",
+                native_enum=False,
+            ),
+            existing_type=sa.Enum("BASIC", "ADMIN", name="userrole", native_enum=False),
+            existing_nullable=False,
+        )
+    # Create the association table
+    op.create_table(
+        "credential__user_group",
+        sa.Column("credential_id", sa.Integer(), nullable=False),
+        sa.Column("user_group_id", sa.Integer(), nullable=False),
+        sa.ForeignKeyConstraint(
+            ["credential_id"],
+            ["credential.id"],
+        ),
+        sa.ForeignKeyConstraint(
+            ["user_group_id"],
+            ["user_group.id"],
+        ),
+        sa.PrimaryKeyConstraint("credential_id", "user_group_id"),
+    )
+    op.add_column(
+        "credential",
+        sa.Column(
+            "curator_public", sa.Boolean(), nullable=False, server_default="false"
+        ),
+    )
+
+
+def downgrade() -> None:
+    # Update existing records to ensure they fit within the BASIC/ADMIN roles
+    op.execute(
+        "UPDATE \"user\" SET role = 'ADMIN' WHERE role IN ('CURATOR', 'GLOBAL_CURATOR')"
+    )
+
+    # Remove is_curator column from User__UserGroup table
+    op.drop_column("user__user_group", "is_curator")
+
+    with op.batch_alter_table("user", schema=None) as batch_op:
+        batch_op.alter_column(  # type: ignore[attr-defined]
+            "role",
+            type_=sa.Enum(
+                "BASIC", "ADMIN", name="userrole", native_enum=False, length=20
+            ),
+            existing_type=sa.Enum(
+                "BASIC",
+                "ADMIN",
+                "CURATOR",
+                "GLOBAL_CURATOR",
+                name="userrole",
+                native_enum=False,
+            ),
+            existing_nullable=False,
+        )
+    # Drop the association table
+    op.drop_table("credential__user_group")
+    op.drop_column("credential", "curator_public")

backend/alembic/versions/35e518e0ddf4_properly_cascade.py

@@ -0,0 +1,122 @@
+"""properly_cascade
+
+Revision ID: 35e518e0ddf4
+Revises: 91a0a4d62b14
+Create Date: 2024-09-20 21:24:04.891018
+
+"""
+
+from alembic import op
+
+
+# revision identifiers, used by Alembic.
+revision = "35e518e0ddf4"
+down_revision = "91a0a4d62b14"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # Update chat_message foreign key constraint
+    op.drop_constraint(
+        "chat_message_chat_session_id_fkey", "chat_message", type_="foreignkey"
+    )
+    op.create_foreign_key(
+        "chat_message_chat_session_id_fkey",
+        "chat_message",
+        "chat_session",
+        ["chat_session_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    # Update chat_message__search_doc foreign key constraints
+    op.drop_constraint(
+        "chat_message__search_doc_chat_message_id_fkey",
+        "chat_message__search_doc",
+        type_="foreignkey",
+    )
+    op.drop_constraint(
+        "chat_message__search_doc_search_doc_id_fkey",
+        "chat_message__search_doc",
+        type_="foreignkey",
+    )
+
+    op.create_foreign_key(
+        "chat_message__search_doc_chat_message_id_fkey",
+        "chat_message__search_doc",
+        "chat_message",
+        ["chat_message_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+    op.create_foreign_key(
+        "chat_message__search_doc_search_doc_id_fkey",
+        "chat_message__search_doc",
+        "search_doc",
+        ["search_doc_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    # Add CASCADE delete for tool_call foreign key
+    op.drop_constraint("tool_call_message_id_fkey", "tool_call", type_="foreignkey")
+    op.create_foreign_key(
+        "tool_call_message_id_fkey",
+        "tool_call",
+        "chat_message",
+        ["message_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+
+def downgrade() -> None:
+    # Revert chat_message foreign key constraint
+    op.drop_constraint(
+        "chat_message_chat_session_id_fkey", "chat_message", type_="foreignkey"
+    )
+    op.create_foreign_key(
+        "chat_message_chat_session_id_fkey",
+        "chat_message",
+        "chat_session",
+        ["chat_session_id"],
+        ["id"],
+    )
+
+    # Revert chat_message__search_doc foreign key constraints
+    op.drop_constraint(
+        "chat_message__search_doc_chat_message_id_fkey",
+        "chat_message__search_doc",
+        type_="foreignkey",
+    )
+    op.drop_constraint(
+        "chat_message__search_doc_search_doc_id_fkey",
+        "chat_message__search_doc",
+        type_="foreignkey",
+    )
+
+    op.create_foreign_key(
+        "chat_message__search_doc_chat_message_id_fkey",
+        "chat_message__search_doc",
+        "chat_message",
+        ["chat_message_id"],
+        ["id"],
+    )
+    op.create_foreign_key(
+        "chat_message__search_doc_search_doc_id_fkey",
+        "chat_message__search_doc",
+        "search_doc",
+        ["search_doc_id"],
+        ["id"],
+    )
+
+    # Revert tool_call foreign key constraint
+    op.drop_constraint("tool_call_message_id_fkey", "tool_call", type_="foreignkey")
+    op.create_foreign_key(
+        "tool_call_message_id_fkey",
+        "tool_call",
+        "chat_message",
+        ["message_id"],
+        ["id"],
+    )

backend/alembic/versions/35e6853a51d5_server_default_chosen_assistants.py

@@ -0,0 +1,65 @@
+"""server default chosen assistants
+
+Revision ID: 35e6853a51d5
+Revises: c99d76fcd298
+Create Date: 2024-09-13 13:20:32.885317
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.dialects import postgresql
+
+# revision identifiers, used by Alembic.
+revision = "35e6853a51d5"
+down_revision = "c99d76fcd298"
+branch_labels = None
+depends_on = None
+
+DEFAULT_ASSISTANTS = [-2, -1, 0]
+
+
+def upgrade() -> None:
+    # Step 1: Update any NULL values to the default value
+    # This upgrades existing users without ordered assistant
+    # to have default assistants set to visible assistants which are
+    # accessible by them.
+    op.execute(
+        """
+        UPDATE "user" u
+        SET chosen_assistants = (
+            SELECT jsonb_agg(
+                p.id ORDER BY
+                    COALESCE(p.display_priority, 2147483647) ASC,
+                    p.id ASC
+            )
+            FROM persona p
+            LEFT JOIN persona__user pu ON p.id = pu.persona_id AND pu.user_id = u.id
+            WHERE p.is_visible = true
+            AND (p.is_public = true OR pu.user_id IS NOT NULL)
+        )
+        WHERE chosen_assistants IS NULL
+        OR chosen_assistants = 'null'
+        OR jsonb_typeof(chosen_assistants) = 'null'
+        OR (jsonb_typeof(chosen_assistants) = 'string' AND chosen_assistants = '"null"')
+    """
+    )
+
+    # Step 2: Alter the column to make it non-nullable
+    op.alter_column(
+        "user",
+        "chosen_assistants",
+        type_=postgresql.JSONB(astext_type=sa.Text()),
+        nullable=False,
+        server_default=sa.text(f"'{DEFAULT_ASSISTANTS}'::jsonb"),
+    )
+
+
+def downgrade() -> None:
+    op.alter_column(
+        "user",
+        "chosen_assistants",
+        type_=postgresql.JSONB(astext_type=sa.Text()),
+        nullable=True,
+        server_default=None,
+    )

backend/alembic/versions/369644546676_add_composite_index_for_index_attempt_.py

@@ -0,0 +1,36 @@
+"""add composite index for index attempt time updated
+
+Revision ID: 369644546676
+Revises: 2955778aa44c
+Create Date: 2025-01-08 15:38:17.224380
+
+"""
+
+from alembic import op
+from sqlalchemy import text
+
+# revision identifiers, used by Alembic.
+revision = "369644546676"
+down_revision = "2955778aa44c"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.create_index(
+        "ix_index_attempt_ccpair_search_settings_time_updated",
+        "index_attempt",
+        [
+            "connector_credential_pair_id",
+            "search_settings_id",
+            text("time_updated DESC"),
+        ],
+        unique=False,
+    )
+
+
+def downgrade() -> None:
+    op.drop_index(
+        "ix_index_attempt_ccpair_search_settings_time_updated",
+        table_name="index_attempt",
+    )

backend/alembic/versions/36e9220ab794_update_kg_trigger_functions.py

@@ -0,0 +1,136 @@
+"""update_kg_trigger_functions
+
+Revision ID: 36e9220ab794
+Revises: c9e2cd766c29
+Create Date: 2025-06-22 17:33:25.833733
+
+"""
+
+from alembic import op
+from sqlalchemy.orm import Session
+from sqlalchemy import text
+from shared_configs.configs import POSTGRES_DEFAULT_SCHEMA
+
+# revision identifiers, used by Alembic.
+revision = "36e9220ab794"
+down_revision = "c9e2cd766c29"
+branch_labels = None
+depends_on = None
+
+
+def _get_tenant_contextvar(session: Session) -> str:
+    """Get the current schema for the migration"""
+    current_tenant = session.execute(text("SELECT current_schema()")).scalar()
+    if isinstance(current_tenant, str):
+        return current_tenant
+    else:
+        raise ValueError("Current tenant is not a string")
+
+
+def upgrade() -> None:
+
+    bind = op.get_bind()
+    session = Session(bind=bind)
+
+    # Create kg_entity trigger to update kg_entity.name and its trigrams
+    tenant_id = _get_tenant_contextvar(session)
+    alphanum_pattern = r"[^a-z0-9]+"
+    truncate_length = 1000
+    function = "update_kg_entity_name"
+    op.execute(
+        text(
+            f"""
+            CREATE OR REPLACE FUNCTION "{tenant_id}".{function}()
+            RETURNS TRIGGER AS $$
+            DECLARE
+                name text;
+                cleaned_name text;
+            BEGIN
+                -- Set name to semantic_id if document_id is not NULL
+                IF NEW.document_id IS NOT NULL THEN
+                    SELECT lower(semantic_id) INTO name
+                    FROM "{tenant_id}".document
+                    WHERE id = NEW.document_id;
+                ELSE
+                    name = lower(NEW.name);
+                END IF;
+
+                -- Clean name and truncate if too long
+                cleaned_name = regexp_replace(
+                    name,
+                    '{alphanum_pattern}', '', 'g'
+                );
+                IF length(cleaned_name) > {truncate_length} THEN
+                    cleaned_name = left(cleaned_name, {truncate_length});
+                END IF;
+
+                -- Set name and name trigrams
+                NEW.name = name;
+                NEW.name_trigrams = {POSTGRES_DEFAULT_SCHEMA}.show_trgm(cleaned_name);
+                RETURN NEW;
+            END;
+            $$ LANGUAGE plpgsql;
+            """
+        )
+    )
+    trigger = f"{function}_trigger"
+    op.execute(f'DROP TRIGGER IF EXISTS {trigger} ON "{tenant_id}".kg_entity')
+    op.execute(
+        f"""
+        CREATE TRIGGER {trigger}
+            BEFORE INSERT OR UPDATE OF name
+            ON "{tenant_id}".kg_entity
+            FOR EACH ROW
+            EXECUTE FUNCTION "{tenant_id}".{function}();
+        """
+    )
+
+    # Create kg_entity trigger to update kg_entity.name and its trigrams
+    function = "update_kg_entity_name_from_doc"
+    op.execute(
+        text(
+            f"""
+            CREATE OR REPLACE FUNCTION "{tenant_id}".{function}()
+            RETURNS TRIGGER AS $$
+            DECLARE
+                doc_name text;
+                cleaned_name text;
+            BEGIN
+                doc_name = lower(NEW.semantic_id);
+
+                -- Clean name and truncate if too long
+                cleaned_name = regexp_replace(
+                    doc_name,
+                    '{alphanum_pattern}', '', 'g'
+                );
+                IF length(cleaned_name) > {truncate_length} THEN
+                    cleaned_name = left(cleaned_name, {truncate_length});
+                END IF;
+
+                -- Set name and name trigrams for all entities referencing this document
+                UPDATE "{tenant_id}".kg_entity
+                SET
+                    name = doc_name,
+                    name_trigrams = {POSTGRES_DEFAULT_SCHEMA}.show_trgm(cleaned_name)
+                WHERE document_id = NEW.id;
+                RETURN NEW;
+            END;
+            $$ LANGUAGE plpgsql;
+            """
+        )
+    )
+    trigger = f"{function}_trigger"
+    op.execute(f'DROP TRIGGER IF EXISTS {trigger} ON "{tenant_id}".document')
+    op.execute(
+        f"""
+        CREATE TRIGGER {trigger}
+            AFTER UPDATE OF semantic_id
+            ON "{tenant_id}".document
+            FOR EACH ROW
+            EXECUTE FUNCTION "{tenant_id}".{function}();
+        """
+    )
+
+
+def downgrade() -> None:
+    pass

backend/alembic/versions/3781a5eb12cb_add_chunk_stats_table.py

@@ -0,0 +1,52 @@
+"""add chunk stats table
+
+Revision ID: 3781a5eb12cb
+Revises: df46c75b714e
+Create Date: 2025-03-10 10:02:30.586666
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "3781a5eb12cb"
+down_revision = "df46c75b714e"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.create_table(
+        "chunk_stats",
+        sa.Column("id", sa.String(), primary_key=True, index=True),
+        sa.Column(
+            "document_id",
+            sa.String(),
+            sa.ForeignKey("document.id"),
+            nullable=False,
+            index=True,
+        ),
+        sa.Column("chunk_in_doc_id", sa.Integer(), nullable=False),
+        sa.Column("information_content_boost", sa.Float(), nullable=True),
+        sa.Column(
+            "last_modified",
+            sa.DateTime(timezone=True),
+            nullable=False,
+            index=True,
+            server_default=sa.func.now(),
+        ),
+        sa.Column("last_synced", sa.DateTime(timezone=True), nullable=True, index=True),
+        sa.UniqueConstraint(
+            "document_id", "chunk_in_doc_id", name="uq_chunk_stats_doc_chunk"
+        ),
+    )
+
+    op.create_index(
+        "ix_chunk_sync_status", "chunk_stats", ["last_modified", "last_synced"]
+    )
+
+
+def downgrade() -> None:
+    op.drop_index("ix_chunk_sync_status", table_name="chunk_stats")
+    op.drop_table("chunk_stats")

backend/alembic/versions/3879338f8ba1_add_tool_table.py

@@ -0,0 +1,46 @@
+"""Add tool table
+
+Revision ID: 3879338f8ba1
+Revises: f1c6478c3fd8
+Create Date: 2024-05-11 16:11:23.718084
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "3879338f8ba1"
+down_revision = "f1c6478c3fd8"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.create_table(
+        "tool",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column("name", sa.String(), nullable=False),
+        sa.Column("description", sa.Text(), nullable=True),
+        sa.Column("in_code_tool_id", sa.String(), nullable=True),
+        sa.PrimaryKeyConstraint("id"),
+    )
+    op.create_table(
+        "persona__tool",
+        sa.Column("persona_id", sa.Integer(), nullable=False),
+        sa.Column("tool_id", sa.Integer(), nullable=False),
+        sa.ForeignKeyConstraint(
+            ["persona_id"],
+            ["persona.id"],
+        ),
+        sa.ForeignKeyConstraint(
+            ["tool_id"],
+            ["tool.id"],
+        ),
+        sa.PrimaryKeyConstraint("persona_id", "tool_id"),
+    )
+
+
+def downgrade() -> None:
+    op.drop_table("persona__tool")
+    op.drop_table("tool")

backend/alembic/versions/38eda64af7fe_add_chat_session_sharing.py

@@ -0,0 +1,42 @@
+"""Add chat session sharing
+
+Revision ID: 38eda64af7fe
+Revises: 776b3bbe9092
+Create Date: 2024-03-27 19:41:29.073594
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "38eda64af7fe"
+down_revision = "776b3bbe9092"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "chat_session",
+        sa.Column(
+            "shared_status",
+            sa.Enum(
+                "PUBLIC",
+                "PRIVATE",
+                name="chatsessionsharedstatus",
+                native_enum=False,
+            ),
+            nullable=True,
+        ),
+    )
+    op.execute("UPDATE chat_session SET shared_status='PRIVATE'")
+    op.alter_column(
+        "chat_session",
+        "shared_status",
+        nullable=False,
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("chat_session", "shared_status")