fix: Clean up DocumentsSidebar (#6805)

Co-authored-by: Yuhong Sun <yuhongsun96@gmail.com>

.github/dependabot.yml

@@ -5,7 +5,7 @@ updates:
     schedule:
       interval: "weekly"
     cooldown:
-      default-days: 4
+      default-days: 7
     open-pull-requests-limit: 3
     assignees:
       - "jmelahman"
@@ -16,7 +16,7 @@ updates:
     schedule:
       interval: "weekly"
     cooldown:
-      default-days: 4
+      default-days: 7
     open-pull-requests-limit: 3
     assignees:
       - "jmelahman"

.github/workflows/check-lazy-imports.yml

@@ -1,33 +0,0 @@
-name: Check Lazy Imports
-concurrency:
-  group: Check-Lazy-Imports-${{ github.workflow }}-${{ github.head_ref || github.event.workflow_run.head_branch || github.run_id }}
-  cancel-in-progress: true
-
-on:
-  merge_group:
-  pull_request:
-    branches:
-      - main
-      - 'release/**'
-
-permissions:
-  contents: read
-
-jobs:
-  check-lazy-imports:
-    runs-on: ubuntu-latest
-    timeout-minutes: 45
-
-    steps:
-    - name: Checkout code
-      uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
-      with:
-        persist-credentials: false
-
-    - name: Set up Python
-      uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # ratchet:actions/setup-python@v6
-      with:
-        python-version: '3.11'
-
-    - name: Check lazy imports
-      run: python3 backend/scripts/check_lazy_imports.py

.github/workflows/deployment.yml

@@ -83,6 +83,47 @@ jobs:
             echo "sanitized-tag=$SANITIZED_TAG"
           } >> "$GITHUB_OUTPUT"
 
+  check-version-tag:
+    runs-on: ubuntu-slim
+    timeout-minutes: 10
+    if: ${{ !startsWith(github.ref_name, 'nightly-latest') && github.event_name != 'workflow_dispatch' }}
+    steps:
+      - name: Checkout
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
+        with:
+          persist-credentials: false
+          fetch-depth: 0
+
+      - name: Setup uv
+        uses: astral-sh/setup-uv@1e862dfacbd1d6d858c55d9b792c756523627244 # ratchet:astral-sh/setup-uv@v7.1.4
+        with:
+          # NOTE: This isn't caching much and zizmor suggests this could be poisoned, so disable.
+          enable-cache: false
+
+      - name: Validate tag is versioned correctly
+        run: |
+          uv run --no-sync --with release-tag tag --check
+
+  notify-slack-on-tag-check-failure:
+    needs:
+      - check-version-tag
+    if: always() && needs.check-version-tag.result == 'failure' && github.event_name != 'workflow_dispatch'
+    runs-on: ubuntu-slim
+    timeout-minutes: 10
+    steps:
+      - name: Checkout
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
+        with:
+          persist-credentials: false
+
+      - name: Send Slack notification
+        uses: ./.github/actions/slack-notify
+        with:
+          webhook-url: ${{ secrets.MONITOR_DEPLOYMENTS_WEBHOOK }}
+          failed-jobs: "• check-version-tag"
+          title: "🚨 Version Tag Check Failed"
+          ref-name: ${{ github.ref_name }}
+
   build-web-amd64:
     needs: determine-builds
     if: needs.determine-builds.outputs.build-web == 'true'
@@ -100,7 +141,7 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -158,7 +199,7 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -266,7 +307,7 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -332,7 +373,7 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -445,7 +486,7 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -502,7 +543,7 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -610,7 +651,7 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -674,7 +715,7 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -867,7 +908,7 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -957,7 +998,7 @@ jobs:
     timeout-minutes: 90
     steps:
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 

.github/workflows/helm-chart-releases.yml

@@ -15,7 +15,7 @@ jobs:
     timeout-minutes: 45
     steps:
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           fetch-depth: 0
           persist-credentials: false

.github/workflows/nightly-scan-licenses.yml

@@ -28,12 +28,12 @@ jobs:
 
     steps:
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Set up Python
-        uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # ratchet:actions/setup-python@v6
+        uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # ratchet:actions/setup-python@v6
         with:
           python-version: '3.11'
           cache: 'pip'

.github/workflows/pr-external-dependency-unit-tests.yml

@@ -7,6 +7,9 @@ on:
   merge_group:
   pull_request:
     branches: [main]
+  push:
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
@@ -29,6 +32,9 @@ env:
   CONFLUENCE_ACCESS_TOKEN: ${{ secrets.CONFLUENCE_ACCESS_TOKEN }}
   CONFLUENCE_ACCESS_TOKEN_SCOPED: ${{ secrets.CONFLUENCE_ACCESS_TOKEN_SCOPED }}
 
+  # Jira
+  JIRA_ADMIN_API_TOKEN: ${{ secrets.JIRA_ADMIN_API_TOKEN }}
+
   # LLMs
   OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
   ANTHROPIC_API_KEY: ${{ secrets.ANTHROPIC_API_KEY }}
@@ -46,7 +52,7 @@ jobs:
       test-dirs: ${{ steps.set-matrix.outputs.test-dirs }}
     steps:
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -74,12 +80,13 @@ jobs:
     env:
       PYTHONPATH: ./backend
       MODEL_SERVER_HOST: "disabled"
+      DISABLE_TELEMETRY: "true"
 
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -107,6 +114,7 @@ jobs:
         run: |
           cat <<EOF > deployment/docker_compose/.env
           CODE_INTERPRETER_BETA_ENABLED=true
+          DISABLE_TELEMETRY=true
           EOF
 
       - name: Set up Standard Dependencies
@@ -162,7 +170,7 @@ jobs:
 
       - name: Upload Docker logs
         if: failure()
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@330a01c490aca151604b8cf639adc76d48f6c5d4 # ratchet:actions/upload-artifact@v5
         with:
           name: docker-logs-${{ matrix.test-dir }}
           path: docker-logs/

.github/workflows/pr-helm-chart-testing.yml

@@ -7,6 +7,9 @@ on:
   merge_group:
   pull_request:
     branches: [ main ]
+  push:
+    tags:
+      - "v*.*.*"
   workflow_dispatch:  # Allows manual triggering
 
 permissions:
@@ -21,7 +24,7 @@ jobs:
     # fetch-depth 0 is required for helm/chart-testing-action
     steps:
     - name: Checkout code
-      uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+      uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
       with:
         fetch-depth: 0
         persist-credentials: false

.github/workflows/pr-integration-tests.yml

@@ -9,6 +9,9 @@ on:
     branches:
       - main
       - "release/**"
+  push:
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
@@ -40,7 +43,7 @@ jobs:
       test-dirs: ${{ steps.set-matrix.outputs.test-dirs }}
     steps:
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -71,10 +74,24 @@ jobs:
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -95,9 +112,13 @@ jobs:
           push: true
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:integration-test-backend-test-${{ github.run_id }}
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache
             type=registry,ref=onyxdotapp/onyx-backend:latest
           cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache,mode=max
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
@@ -108,10 +129,24 @@ jobs:
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -132,9 +167,14 @@ jobs:
           push: true
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:integration-test-model-server-test-${{ github.run_id }}
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache
             type=registry,ref=onyxdotapp/onyx-model-server:latest
-          cache-to: type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache,mode=max
+          cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache,mode=max
 
 
   build-integration-image:
@@ -143,7 +183,7 @@ jobs:
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -159,16 +199,40 @@ jobs:
           username: ${{ secrets.DOCKER_USERNAME }}
           password: ${{ secrets.DOCKER_TOKEN }}
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Build and push integration test image with Docker Bake
         env:
           INTEGRATION_REPOSITORY: ${{ env.RUNS_ON_ECR_CACHE }}
           TAG: integration-test-${{ github.run_id }}
+          CACHE_SUFFIX: ${{ steps.format-branch.outputs.cache-suffix }}
+          HEAD_SHA: ${{ github.event.pull_request.head.sha || github.sha }}
         run: |
           cd backend && docker buildx bake --push \
+            --set backend.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${HEAD_SHA} \
+            --set backend.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${CACHE_SUFFIX} \
             --set backend.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache \
             --set backend.cache-from=type=registry,ref=onyxdotapp/onyx-backend:latest \
+            --set backend.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${HEAD_SHA},mode=max \
+            --set backend.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${CACHE_SUFFIX},mode=max \
             --set backend.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache,mode=max \
+            --set integration.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${HEAD_SHA} \
+            --set integration.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${CACHE_SUFFIX} \
             --set integration.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache \
+            --set integration.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${HEAD_SHA},mode=max \
+            --set integration.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${CACHE_SUFFIX},mode=max \
             --set integration.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache,mode=max \
             integration
 
@@ -195,7 +259,7 @@ jobs:
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -210,23 +274,28 @@ jobs:
 
       # NOTE: Use pre-ping/null pool to reduce flakiness due to dropped connections
       # NOTE: don't need web server for integration tests
-      - name: Start Docker containers
+      - name: Create .env file for Docker Compose
         env:
           ECR_CACHE: ${{ env.RUNS_ON_ECR_CACHE }}
           RUN_ID: ${{ github.run_id }}
+        run: |
+          cat <<EOF > deployment/docker_compose/.env
+          ENABLE_PAID_ENTERPRISE_EDITION_FEATURES=true
+          AUTH_TYPE=basic
+          POSTGRES_POOL_PRE_PING=true
+          POSTGRES_USE_NULL_POOL=true
+          REQUIRE_EMAIL_VERIFICATION=false
+          DISABLE_TELEMETRY=true
+          ONYX_BACKEND_IMAGE=${ECR_CACHE}:integration-test-backend-test-${RUN_ID}
+          ONYX_MODEL_SERVER_IMAGE=${ECR_CACHE}:integration-test-model-server-test-${RUN_ID}
+          INTEGRATION_TESTS_MODE=true
+          CHECK_TTL_MANAGEMENT_TASK_FREQUENCY_IN_HOURS=0.001
+          MCP_SERVER_ENABLED=true
+          EOF
+
+      - name: Start Docker containers
         run: |
           cd deployment/docker_compose
-          ENABLE_PAID_ENTERPRISE_EDITION_FEATURES=true \
-          AUTH_TYPE=basic \
-          POSTGRES_POOL_PRE_PING=true \
-          POSTGRES_USE_NULL_POOL=true \
-          REQUIRE_EMAIL_VERIFICATION=false \
-          DISABLE_TELEMETRY=true \
-          ONYX_BACKEND_IMAGE=${ECR_CACHE}:integration-test-backend-test-${RUN_ID} \
-          ONYX_MODEL_SERVER_IMAGE=${ECR_CACHE}:integration-test-model-server-test-${RUN_ID} \
-          INTEGRATION_TESTS_MODE=true \
-          CHECK_TTL_MANAGEMENT_TASK_FREQUENCY_IN_HOURS=0.001 \
-          MCP_SERVER_ENABLED=true \
           docker compose -f docker-compose.yml -f docker-compose.dev.yml up \
             relational_db \
             index \
@@ -372,7 +441,7 @@ jobs:
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 

.github/workflows/pr-jest-tests.yml

@@ -3,7 +3,8 @@ concurrency:
   group: Run-Jest-Tests-${{ github.workflow }}-${{ github.head_ref || github.event.workflow_run.head_branch || github.run_id }}
   cancel-in-progress: true
 
-on: push
+on:
+  push:
 
 permissions:
   contents: read
@@ -15,15 +16,15 @@ jobs:
     timeout-minutes: 45
     steps:
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Setup node
-        uses: actions/setup-node@2028fbc5c25fe9cf00d9f06a71cc4710d4507903 # ratchet:actions/setup-node@v4
+        uses: actions/setup-node@395ad3262231945c25e8478fd5baf05154b1d79f # ratchet:actions/setup-node@v4
         with:
           node-version: 22
-          cache: 'npm'
+          cache: "npm"
           cache-dependency-path: ./web/package-lock.json
 
       - name: Install node dependencies

.github/workflows/pr-mit-integration-tests.yml

@@ -6,6 +6,9 @@ concurrency:
 on:
   merge_group:
     types: [checks_requested]
+  push:
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
@@ -37,7 +40,7 @@ jobs:
       test-dirs: ${{ steps.set-matrix.outputs.test-dirs }}
     steps:
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -67,10 +70,24 @@ jobs:
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -91,9 +108,14 @@ jobs:
           push: true
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:integration-test-backend-test-${{ github.run_id }}
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache
             type=registry,ref=onyxdotapp/onyx-backend:latest
-          cache-to: type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache,mode=max
+          cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache,mode=max
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   build-model-server-image:
@@ -102,10 +124,24 @@ jobs:
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -126,9 +162,14 @@ jobs:
           push: true
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:integration-test-model-server-test-${{ github.run_id }}
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache
             type=registry,ref=onyxdotapp/onyx-model-server:latest
-          cache-to: type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache,mode=max
+          cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache,mode=max
 
   build-integration-image:
     runs-on: [runs-on, runner=2cpu-linux-arm64, "run-id=${{ github.run_id }}-build-integration-image", "extras=ecr-cache"]
@@ -136,10 +177,24 @@ jobs:
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -156,12 +211,22 @@ jobs:
         env:
           INTEGRATION_REPOSITORY: ${{ env.RUNS_ON_ECR_CACHE }}
           TAG: integration-test-${{ github.run_id }}
+          CACHE_SUFFIX: ${{ steps.format-branch.outputs.cache-suffix }}
+          HEAD_SHA: ${{ github.event.pull_request.head.sha || github.sha }}
         run: |
           cd backend && docker buildx bake --push \
+            --set backend.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${HEAD_SHA} \
+            --set backend.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${CACHE_SUFFIX} \
             --set backend.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache \
             --set backend.cache-from=type=registry,ref=onyxdotapp/onyx-backend:latest \
+            --set backend.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${HEAD_SHA},mode=max \
+            --set backend.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${CACHE_SUFFIX},mode=max \
             --set backend.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache,mode=max \
+            --set integration.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${HEAD_SHA} \
+            --set integration.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${CACHE_SUFFIX} \
             --set integration.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache \
+            --set integration.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${HEAD_SHA},mode=max \
+            --set integration.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${CACHE_SUFFIX},mode=max \
             --set integration.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache,mode=max \
             integration
 
@@ -188,7 +253,7 @@ jobs:
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -203,21 +268,26 @@ jobs:
 
       # NOTE: Use pre-ping/null pool to reduce flakiness due to dropped connections
       # NOTE: don't need web server for integration tests
-      - name: Start Docker containers
+      - name: Create .env file for Docker Compose
         env:
           ECR_CACHE: ${{ env.RUNS_ON_ECR_CACHE }}
           RUN_ID: ${{ github.run_id }}
+        run: |
+          cat <<EOF > deployment/docker_compose/.env
+          AUTH_TYPE=basic
+          POSTGRES_POOL_PRE_PING=true
+          POSTGRES_USE_NULL_POOL=true
+          REQUIRE_EMAIL_VERIFICATION=false
+          DISABLE_TELEMETRY=true
+          ONYX_BACKEND_IMAGE=${ECR_CACHE}:integration-test-backend-test-${RUN_ID}
+          ONYX_MODEL_SERVER_IMAGE=${ECR_CACHE}:integration-test-model-server-test-${RUN_ID}
+          INTEGRATION_TESTS_MODE=true
+          MCP_SERVER_ENABLED=true
+          EOF
+
+      - name: Start Docker containers
         run: |
           cd deployment/docker_compose
-          AUTH_TYPE=basic \
-          POSTGRES_POOL_PRE_PING=true \
-          POSTGRES_USE_NULL_POOL=true \
-          REQUIRE_EMAIL_VERIFICATION=false \
-          DISABLE_TELEMETRY=true \
-          ONYX_BACKEND_IMAGE=${ECR_CACHE}:integration-test-backend-test-${RUN_ID} \
-          ONYX_MODEL_SERVER_IMAGE=${ECR_CACHE}:integration-test-model-server-test-${RUN_ID} \
-          INTEGRATION_TESTS_MODE=true \
-          MCP_SERVER_ENABLED=true \
           docker compose -f docker-compose.yml -f docker-compose.dev.yml up \
             relational_db \
             index \

.github/workflows/pr-playwright-tests.yml

@@ -3,7 +3,8 @@ concurrency:
   group: Run-Playwright-Tests-${{ github.workflow }}-${{ github.head_ref || github.event.workflow_run.head_branch || github.run_id }}
   cancel-in-progress: true
 
-on: push
+on:
+  push:
 
 permissions:
   contents: read
@@ -52,10 +53,24 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -76,9 +91,14 @@ jobs:
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:playwright-test-web-${{ github.run_id }}
           push: true
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache
             type=registry,ref=onyxdotapp/onyx-web-server:latest
-          cache-to: type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache,mode=max
+          cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache,mode=max
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   build-backend-image:
@@ -88,10 +108,24 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -112,9 +146,13 @@ jobs:
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:playwright-test-backend-${{ github.run_id }}
           push: true
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache
             type=registry,ref=onyxdotapp/onyx-backend:latest
           cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache,mode=max
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
@@ -125,10 +163,24 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -149,9 +201,14 @@ jobs:
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:playwright-test-model-server-${{ github.run_id }}
           push: true
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache
             type=registry,ref=onyxdotapp/onyx-model-server:latest
-          cache-to: type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache,mode=max
+          cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache,mode=max
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   playwright-tests:
@@ -172,13 +229,13 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           fetch-depth: 0
           persist-credentials: false
 
       - name: Setup node
-        uses: actions/setup-node@2028fbc5c25fe9cf00d9f06a71cc4710d4507903 # ratchet:actions/setup-node@v4
+        uses: actions/setup-node@395ad3262231945c25e8478fd5baf05154b1d79f # ratchet:actions/setup-node@v4
         with:
           node-version: 22
           cache: 'npm'
@@ -408,12 +465,12 @@ jobs:
 #     ]
 #   steps:
 #     - name: Checkout code
-#       uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+#       uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
 #       with:
 #         fetch-depth: 0
 
 #     - name: Setup node
-#       uses: actions/setup-node@2028fbc5c25fe9cf00d9f06a71cc4710d4507903 # ratchet:actions/setup-node@v4
+#       uses: actions/setup-node@395ad3262231945c25e8478fd5baf05154b1d79f # ratchet:actions/setup-node@v4
 #       with:
 #         node-version: 22
 

.github/workflows/pr-python-checks.yml

@@ -9,29 +9,14 @@ on:
     branches:
       - main
       - 'release/**'
+  push:
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
 
 jobs:
-  validate-requirements:
-    runs-on: ubuntu-slim
-    timeout-minutes: 45
-    steps:
-      - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
-        with:
-          persist-credentials: false
-
-      - name: Setup uv
-        uses: astral-sh/setup-uv@caf0cab7a618c569241d31dcd442f54681755d39 # ratchet:astral-sh/setup-uv@v3
-        # TODO: Enable caching once there is a uv.lock file checked in.
-        # with:
-        #   enable-cache: true
-
-      - name: Validate requirements lock files
-        run: ./backend/scripts/compile_requirements.py --check
-
   mypy-check:
     # See https://runs-on.com/runners/linux/
     # Note: Mypy seems quite optimized for x64 compared to arm64.
@@ -42,7 +27,7 @@ jobs:
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -55,35 +40,10 @@ jobs:
             backend/requirements/model_server.txt
             backend/requirements/ee.txt
 
-      - name: Generate OpenAPI schema
-        shell: bash
-        working-directory: backend
-        env:
-          PYTHONPATH: "."
-        run: |
-          python scripts/onyx_openapi_schema.py --filename generated/openapi.json
-
-      # needed for pulling openapitools/openapi-generator-cli
-      # otherwise, we hit the "Unauthenticated users" limit
-      # https://docs.docker.com/docker-hub/usage/
-      - name: Login to Docker Hub
-        uses: docker/login-action@5e57cd118135c172c3672efd75eb46360885c0ef # ratchet:docker/login-action@v3
-        with:
-          username: ${{ secrets.DOCKER_USERNAME }}
-          password: ${{ secrets.DOCKER_TOKEN }}
-
-      - name: Generate OpenAPI Python client
+      - name: Generate OpenAPI schema and Python client
         shell: bash
         run: |
-          docker run --rm \
-            -v "${{ github.workspace }}/backend/generated:/local" \
-            openapitools/openapi-generator-cli generate \
-            -i /local/openapi.json \
-            -g python \
-            -o /local/onyx_openapi_client \
-            --package-name onyx_openapi_client \
-            --skip-validate-spec \
-            --openapi-normalizer "SIMPLIFY_ONEOF_ANYOF=true,SET_OAS3_NULLABLE=true"
+          ods openapi all
 
       - name: Cache mypy cache
         if: ${{ vars.DISABLE_MYPY_CACHE != 'true' }}
@@ -101,11 +61,8 @@ jobs:
           TERM: xterm-256color
         run: mypy .
 
-      - name: Check import order with reorder-python-imports
-        working-directory: ./backend
-        run: |
-          find ./onyx -name "*.py" | xargs reorder-python-imports --py311-plus
-
-      - name: Check code formatting with Black
-        working-directory: ./backend
-        run: black --check .
+      - name: Run MyPy (tools/)
+        env:
+          MYPY_FORCE_COLOR: 1
+          TERM: xterm-256color
+        run: mypy tools/

.github/workflows/pr-python-connector-tests.yml

@@ -7,6 +7,9 @@ on:
   merge_group:
   pull_request:
     branches: [main]
+  push:
+    tags:
+      - "v*.*.*"
   schedule:
     # This cron expression runs the job daily at 16:00 UTC (9am PT)
     - cron: "0 16 * * *"
@@ -130,12 +133,13 @@ jobs:
 
     env:
       PYTHONPATH: ./backend
+      DISABLE_TELEMETRY: "true"
 
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -157,16 +161,20 @@ jobs:
             hubspot:
               - 'backend/onyx/connectors/hubspot/**'
               - 'backend/tests/daily/connectors/hubspot/**'
+              - 'uv.lock'
             salesforce:
               - 'backend/onyx/connectors/salesforce/**'
               - 'backend/tests/daily/connectors/salesforce/**'
+              - 'uv.lock'
             github:
               - 'backend/onyx/connectors/github/**'
               - 'backend/tests/daily/connectors/github/**'
+              - 'uv.lock'
             file_processing:
               - 'backend/onyx/file_processing/**'
+              - 'uv.lock'
 
-      - name: Run Tests (excluding HubSpot, Salesforce, and GitHub)
+      - name: Run Tests (excluding HubSpot, Salesforce, GitHub, and Coda)
         shell: script -q -e -c "bash --noprofile --norc -eo pipefail {0}"
         run: |
           py.test \
@@ -179,7 +187,8 @@ jobs:
             backend/tests/daily/connectors \
             --ignore backend/tests/daily/connectors/hubspot \
             --ignore backend/tests/daily/connectors/salesforce \
-            --ignore backend/tests/daily/connectors/github
+            --ignore backend/tests/daily/connectors/github \
+            --ignore backend/tests/daily/connectors/coda
 
       - name: Run HubSpot Connector Tests
         if: ${{ github.event_name == 'schedule' || steps.changes.outputs.hubspot == 'true' || steps.changes.outputs.file_processing == 'true' }}

.github/workflows/pr-python-model-tests.yml

@@ -39,7 +39,7 @@ jobs:
 
     steps:
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -61,7 +61,7 @@ jobs:
           docker tag onyxdotapp/onyx-model-server:latest onyxdotapp/onyx-model-server:test
 
       - name: Set up Python
-        uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # ratchet:actions/setup-python@v6
+        uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # ratchet:actions/setup-python@v6
         with:
           python-version: "3.11"
           cache: "pip"

.github/workflows/pr-python-tests.yml

@@ -9,6 +9,9 @@ on:
     branches:
       - main
       - 'release/**'
+  push:
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
@@ -23,15 +26,13 @@ jobs:
     env:
       PYTHONPATH: ./backend
       REDIS_CLOUD_PYTEST_PASSWORD: ${{ secrets.REDIS_CLOUD_PYTEST_PASSWORD }}
-      SF_USERNAME: ${{ secrets.SF_USERNAME }}
-      SF_PASSWORD: ${{ secrets.SF_PASSWORD }}
-      SF_SECURITY_TOKEN: ${{ secrets.SF_SECURITY_TOKEN }}
+      DISABLE_TELEMETRY: "true"
 
     steps:
     - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
     - name: Checkout code
-      uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+      uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
       with:
         persist-credentials: false
 

.github/workflows/pr-quality-checks.yml

@@ -6,32 +6,42 @@ concurrency:
 on:
   merge_group:
   pull_request: null
+  push:
+    branches:
+      - main
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
 
 jobs:
   quality-checks:
-    # See https://runs-on.com/runners/linux/
-    runs-on: [runs-on, runner=1cpu-linux-arm64, "run-id=${{ github.run_id }}-quality-checks"]
+    runs-on: ubuntu-latest
     timeout-minutes: 45
     steps:
-      - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
-      - uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+      - uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           fetch-depth: 0
           persist-credentials: false
-      - uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # ratchet:actions/setup-python@v6
+      - uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # ratchet:actions/setup-python@v6
         with:
           python-version: "3.11"
       - name: Setup Terraform
         uses: hashicorp/setup-terraform@b9cd54a3c349d3f38e8881555d616ced269862dd # ratchet:hashicorp/setup-terraform@v3
-      - uses: pre-commit/action@2c7b3805fd2a0fd8c1884dcaebf91fc102a13ecd # ratchet:pre-commit/action@v3.0.1
-        env:
-          # uv-run is mypy's id and mypy is covered by the Python Checks which caches dependencies better.
-          SKIP: uv-run
+      - name: Setup node
+        uses: actions/setup-node@395ad3262231945c25e8478fd5baf05154b1d79f # ratchet:actions/setup-node@v6
+        with: # zizmor: ignore[cache-poisoning]
+          node-version: 22
+          cache: "npm"
+          cache-dependency-path: ./web/package-lock.json
+      - name: Install node dependencies
+        working-directory: ./web
+        run: npm ci
+      - uses: j178/prek-action@91fd7d7cf70ae1dee9f4f44e7dfa5d1073fe6623 # ratchet:j178/prek-action@v1
         with:
-          extra_args: ${{ github.event_name == 'pull_request' && format('--from-ref {0} --to-ref {1}', github.event.pull_request.base.sha, github.event.pull_request.head.sha) || '' }}
+          prek-version: '0.2.21'
+          extra-args: ${{ github.event_name == 'pull_request' && format('--from-ref {0} --to-ref {1}', github.event.pull_request.base.sha, github.event.pull_request.head.sha) || github.event_name == 'merge_group' && format('--from-ref {0} --to-ref {1}', github.event.merge_group.base_sha, github.event.merge_group.head_sha) || github.ref_name == 'main' && '--all-files' || '' }}
       - name: Check Actions
         uses: giner/check-actions@28d366c7cbbe235f9624a88aa31a628167eee28c # ratchet:giner/check-actions@v1.0.1
         with:

.github/workflows/release-devtools.yml

@@ -0,0 +1,40 @@
+name: Release Devtools
+
+on:
+  push:
+    tags:
+      - "ods/v*.*.*"
+
+jobs:
+  pypi:
+    runs-on: ubuntu-latest
+    environment:
+      name: release-devtools
+    permissions:
+      id-token: write
+    timeout-minutes: 10
+    strategy:
+      matrix:
+        os-arch:
+          - {goos: "linux", goarch: "amd64"}
+          - {goos: "linux", goarch: "arm64"}
+          - {goos: "windows", goarch: "amd64"}
+          - {goos: "windows", goarch: "arm64"}
+          - {goos: "darwin", goarch: "amd64"}
+          - {goos: "darwin", goarch: "arm64"}
+          - {goos: "", goarch: ""}
+    steps:
+      - uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
+        with:
+          persist-credentials: false
+          fetch-depth: 0
+      - uses: astral-sh/setup-uv@1e862dfacbd1d6d858c55d9b792c756523627244 # ratchet:astral-sh/setup-uv@v7
+        with:
+          enable-cache: false
+      - run: |
+          GOOS="${{ matrix.os-arch.goos }}" \
+          GOARCH="${{ matrix.os-arch.goarch }}" \
+          uv build --wheel
+        working-directory: tools/ods
+      - run: uv publish
+        working-directory: tools/ods

.github/workflows/sync_foss.yml

@@ -14,7 +14,7 @@ jobs:
       contents: read
     steps:
       - name: Checkout main Onyx repo
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           fetch-depth: 0
           persist-credentials: false

.github/workflows/tag-nightly.yml

@@ -18,7 +18,7 @@ jobs:
       # see https://github.com/orgs/community/discussions/27028#discussioncomment-3254367 for the workaround we
       # implement here which needs an actual user's deploy key
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           ssh-key: "${{ secrets.DEPLOY_KEY }}"
           persist-credentials: true

.github/workflows/zizmor.yml

@@ -17,15 +17,17 @@ jobs:
       security-events: write # needed for SARIF uploads
     steps:
       - name: Checkout repository
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6.0.0
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6.0.1
         with:
           persist-credentials: false
 
       - name: Install the latest version of uv
-        uses: astral-sh/setup-uv@5a7eac68fb9809dea845d802897dc5c723910fa3 # ratchet:astral-sh/setup-uv@v7.1.3
+        uses: astral-sh/setup-uv@1e862dfacbd1d6d858c55d9b792c756523627244 # ratchet:astral-sh/setup-uv@v7.1.4
+        with:
+          enable-cache: false
 
       - name: Run zizmor
-        run: uvx zizmor==1.16.3 --format=sarif . > results.sarif
+        run: uv run --no-sync --with zizmor zizmor --format=sarif . > results.sarif
         env:
           GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
 

.gitignore

@@ -49,5 +49,10 @@ CLAUDE.md
 # Local .terraform.lock.hcl file
 .terraform.lock.hcl
 
+node_modules
+
 # MCP configs
 .playwright-mcp
+
+# plans
+plans/

.pre-commit-config.yaml

@@ -5,36 +5,60 @@ default_install_hook_types:
   - post-rewrite
 repos:
   - repo: https://github.com/astral-sh/uv-pre-commit
-    # This revision is from https://github.com/astral-sh/uv-pre-commit/pull/53
+    # From: https://github.com/astral-sh/uv-pre-commit/pull/53/commits/d30b4298e4fb63ce8609e29acdbcf4c9018a483c
     rev: d30b4298e4fb63ce8609e29acdbcf4c9018a483c
     hooks:
-      - id: uv-sync
       - id: uv-run
-        name: mypy
-        args: ["mypy"]
-        pass_filenames: true
-        files: ^backend/.*\.py$
+        name: Check lazy imports
+        args: ["--with=onyx-devtools", "ods", "check-lazy-imports"]
+        files: ^backend/(?!\.venv/).*\.py$
+      - id: uv-sync
+        args: ["--locked", "--all-extras"]
+      - id: uv-lock
+        files: ^pyproject\.toml$
+      - id: uv-export
+        name: uv-export default.txt
+        args: ["--no-emit-project", "--no-default-groups", "--no-hashes", "--extra", "backend", "-o", "backend/requirements/default.txt"]
+        files: ^(pyproject\.toml|uv\.lock|backend/requirements/.*\.txt)$
+      - id: uv-export
+        name: uv-export dev.txt
+        args: ["--no-emit-project", "--no-default-groups", "--no-hashes", "--extra", "dev", "-o", "backend/requirements/dev.txt"]
+        files: ^(pyproject\.toml|uv\.lock|backend/requirements/.*\.txt)$
+      - id: uv-export
+        name: uv-export ee.txt
+        args: ["--no-emit-project", "--no-default-groups", "--no-hashes", "--extra", "ee", "-o", "backend/requirements/ee.txt"]
+        files: ^(pyproject\.toml|uv\.lock|backend/requirements/.*\.txt)$
+      - id: uv-export
+        name: uv-export model_server.txt
+        args: ["--no-emit-project", "--no-default-groups", "--no-hashes", "--extra", "model_server", "-o", "backend/requirements/model_server.txt"]
+        files: ^(pyproject\.toml|uv\.lock|backend/requirements/.*\.txt)$
+      # NOTE: This takes ~6s on a single, large module which is prohibitively slow.
+      # - id: uv-run
+      #   name: mypy
+      #   args: ["--all-extras", "mypy"]
+      #   pass_filenames: true
+      #   files: ^backend/.*\.py$
 
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: 3e8a8703264a2f4a69428a0aa4dcb512790b2c8c  # frozen: v6.0.0
     hooks:
       - id: check-yaml
         files: ^.github/
 
   - repo: https://github.com/rhysd/actionlint
-    rev: v1.7.8
+    rev: a443f344ff32813837fa49f7aa6cbc478d770e62  # frozen: v1.7.9
     hooks:
       - id: actionlint
 
   - repo: https://github.com/psf/black
-    rev: 25.1.0
+    rev: 8a737e727ac5ab2f1d4cf5876720ed276dc8dc4b # frozen: 25.1.0
     hooks:
     - id: black
       language_version: python3.11
 
   # this is a fork which keeps compatibility with black
   - repo: https://github.com/wimglenn/reorder-python-imports-black
-    rev: v3.14.0
+    rev: f55cd27f90f0cf0ee775002c2383ce1c7820013d  # frozen: v3.14.0
     hooks:
     - id: reorder-python-imports
       args: ['--py311-plus', '--application-directories=backend/']
@@ -46,26 +70,32 @@ repos:
   # These settings will remove unused imports with side effects
   # Note: The repo currently does not and should not have imports with side effects
   - repo: https://github.com/PyCQA/autoflake
-    rev: v2.3.1
+    rev: 0544741e2b4a22b472d9d93e37d4ea9153820bb1  # frozen: v2.3.1
     hooks:
       - id: autoflake
         args: [ '--remove-all-unused-imports', '--remove-unused-variables', '--in-place' , '--recursive']
 
+  - repo: https://github.com/golangci/golangci-lint
+    rev: 9f61b0f53f80672872fced07b6874397c3ed197b  # frozen: v2.7.2
+    hooks:
+      - id: golangci-lint
+        entry: bash -c "find tools/ -name go.mod -print0 | xargs -0 -I{} bash -c 'cd \"$(dirname {})\" && golangci-lint run ./...'"
+
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.11.4
+    rev: 971923581912ef60a6b70dbf0c3e9a39563c9d47  # frozen: v0.11.4
     hooks:
       - id: ruff
 
   - repo: https://github.com/pre-commit/mirrors-prettier
-    rev: v3.1.0
+    rev: ffb6a759a979008c0e6dff86e39f4745a2d9eac4  # frozen: v3.1.0
     hooks:
     - id: prettier
       types_or: [html, css, javascript, ts, tsx]
       language_version: system
 
   - repo: https://github.com/sirwart/ripsecrets
-    rev: v0.1.11
+    rev: 7d94620933e79b8acaa0cd9e60e9864b07673d86  # frozen: v0.1.11
     hooks:
       - id: ripsecrets
         args:
@@ -82,8 +112,9 @@ repos:
         pass_filenames: false
         files: \.tf$
 
-      - id: check-lazy-imports
-        name: Check lazy imports
-        entry: python3 backend/scripts/check_lazy_imports.py
+      - id: typescript-check
+        name: TypeScript type check
+        entry: bash -c 'cd web && npm run types:check'
         language: system
-        files: ^backend/(?!\.venv/).*\.py$
+        pass_filenames: false
+        files: ^web/.*\.(ts|tsx)$

.vscode/env_template.txt

@@ -5,11 +5,8 @@
 # For local dev, often user Authentication is not needed
 AUTH_TYPE=disabled
 
-# Skip warm up for dev
-SKIP_WARM_UP=True
-
 # Always keep these on for Dev
-# Logs all model prompts to stdout
+# Logs model prompts, reasoning, and answer to stdout
 LOG_ONYX_MODEL_INTERACTIONS=True
 # More verbose logging
 LOG_LEVEL=debug
@@ -37,31 +34,16 @@ OPENAI_API_KEY=<REPLACE THIS>
 GEN_AI_MODEL_VERSION=gpt-4o
 FAST_GEN_AI_MODEL_VERSION=gpt-4o
 
-# For Onyx Slack Bot, overrides the UI values so no need to set this up via UI every time
-# Only needed if using OnyxBot
-#ONYX_BOT_SLACK_APP_TOKEN=<REPLACE THIS>
-#ONYX_BOT_SLACK_BOT_TOKEN=<REPLACE THIS>
-
 
 # Python stuff
 PYTHONPATH=../backend
 PYTHONUNBUFFERED=1
 
 
-# Internet Search
-EXA_API_KEY=<REPLACE THIS>
-
-
 # Enable the full set of Danswer Enterprise Edition features
 # NOTE: DO NOT ENABLE THIS UNLESS YOU HAVE A PAID ENTERPRISE LICENSE (or if you are using this for local testing/development)
 ENABLE_PAID_ENTERPRISE_EDITION_FEATURES=False
 
-# Agent Search configs  # TODO: Remove give proper namings
-AGENT_RETRIEVAL_STATS=False   # Note: This setting will incur substantial re-ranking effort
-AGENT_RERANKING_STATS=True
-AGENT_MAX_QUERY_RETRIEVAL_RESULTS=20
-AGENT_RERANKING_MAX_QUERY_RETRIEVAL_RESULTS=20
-
 # S3 File Store Configuration (MinIO for local development)
 S3_ENDPOINT_URL=http://localhost:9004
 S3_FILE_STORE_BUCKET_NAME=onyx-file-store-bucket

.vscode/launch.template.jsonc

@@ -133,8 +133,6 @@
       },
       "consoleTitle": "API Server Console"
     },
-    // For the listener to access the Slack API,
-    // ONYX_BOT_SLACK_APP_TOKEN & ONYX_BOT_SLACK_BOT_TOKEN need to be set in .env file located in the root of the project
     {
       "name": "Slack Bot",
       "consoleName": "Slack Bot",
@@ -510,7 +508,6 @@
       ],
       "cwd": "${workspaceFolder}",
       "console": "integratedTerminal",
-      "stopOnEntry": true,
       "presentation": {
         "group": "3"
       }
@@ -556,10 +553,10 @@
       "name": "Install Python Requirements",
       "type": "node",
       "request": "launch",
-      "runtimeExecutable": "bash",
+      "runtimeExecutable": "uv",
       "runtimeArgs": [
-        "-c",
-        "pip install -r backend/requirements/default.txt && pip install -r backend/requirements/dev.txt && pip install -r backend/requirements/ee.txt && pip install -r backend/requirements/model_server.txt"
+        "sync",
+        "--all-extras"
       ],
       "cwd": "${workspaceFolder}",
       "console": "integratedTerminal",
@@ -572,14 +569,14 @@
       "name": "Onyx OpenAPI Schema Generator",
       "type": "debugpy",
       "request": "launch",
-      "program": "scripts/onyx_openapi_schema.py",
-      "cwd": "${workspaceFolder}/backend",
+      "program": "backend/scripts/onyx_openapi_schema.py",
+      "cwd": "${workspaceFolder}",
       "envFile": "${workspaceFolder}/.env",
       "env": {
         "PYTHONUNBUFFERED": "1",
-        "PYTHONPATH": "."
+        "PYTHONPATH": "backend"
       },
-      "args": ["--filename", "generated/openapi.json"]
+      "args": ["--filename", "backend/generated/openapi.json", "--generate-python-client"]
     },
     {
       // script to debug multi tenant db issues

CLAUDE.md.template

@@ -4,7 +4,7 @@ This file provides guidance to Claude Code (claude.ai/code) when working with co
 
 ## KEY NOTES
 
-- If you run into any missing python dependency errors, try running your command with `source backend/.venv/bin/activate` \
+- If you run into any missing python dependency errors, try running your command with `source .venv/bin/activate` \
 to assume the python venv.
 - To make tests work, check the `.env` file at the root of the project to find an OpenAI key.
 - If using `playwright` to explore the frontend, you can usually log in with username `a@test.com` and password

CONTRIBUTING.md

@@ -71,12 +71,12 @@ If using a higher version, sometimes some libraries will not be available (i.e.
 
 #### Backend: Python requirements
 
-Currently, we use pip and recommend creating a virtual environment.
+Currently, we use [uv](https://docs.astral.sh/uv/) and recommend creating a [virtual environment](https://docs.astral.sh/uv/pip/environments/#using-a-virtual-environment).
 
 For convenience here's a command for it:
 
 ```bash
-python -m venv .venv
+uv venv .venv --python 3.11
 source .venv/bin/activate
 ```
 
@@ -95,33 +95,15 @@ If using PowerShell, the command slightly differs:
 Install the required python dependencies:
 
 ```bash
-pip install -r backend/requirements/combined.txt
+uv sync --all-extras
 ```
 
-or
+Install Playwright for Python (headless browser required by the Web Connector):
 
 ```bash
-pip install -r backend/requirements/default.txt
-pip install -r backend/requirements/dev.txt
-pip install -r backend/requirements/ee.txt
-pip install -r backend/requirements/model_server.txt
+uv run playwright install
 ```
 
-Fix vscode/cursor auto-imports:
-```bash
-pip install -e .
-```
-
-Install Playwright for Python (headless browser required by the Web Connector)
-
-In the activated Python virtualenv, install Playwright for Python by running:
-
-```bash
-playwright install
-```
-
-You may have to deactivate and reactivate your virtualenv for `playwright` to appear on your path.
-
 #### Frontend: Node dependencies
 
 Onyx uses Node v22.20.0. We highly recommend you use [Node Version Manager (nvm)](https://github.com/nvm-sh/nvm)
@@ -130,7 +112,7 @@ to manage your Node installations. Once installed, you can run
 ```bash
 nvm install 22 && nvm use 22
 node -v # verify your active version
-``` 
+```
 
 Navigate to `onyx/web` and run:
 
@@ -144,21 +126,15 @@ npm i
 
 For the backend, you'll need to setup pre-commit hooks (black / reorder-python-imports).
 
-With the virtual environment active, install the pre-commit library with:
+Then run:
 
 ```bash
-pip install pre-commit
-```
-
-Then, from the `onyx/backend` directory, run:
-
-```bash
-pre-commit install
+uv run pre-commit install
 ```
 
 Additionally, we use `mypy` for static type checking.
 Onyx is fully type-annotated, and we want to keep it that way!
-To run the mypy checks manually, run `python -m mypy .` from the `onyx/backend` directory.
+To run the mypy checks manually, run `uv run mypy .` from the `onyx/backend` directory.
 
 ### Web
 

backend/alembic/README.md

@@ -7,8 +7,12 @@ Onyx migrations use a generic single-database configuration with an async dbapi.
 
 ## To generate new migrations:
 
-run from onyx/backend:
-`alembic revision --autogenerate -m <DESCRIPTION_OF_MIGRATION>`
+From onyx/backend, run:
+`alembic revision -m <DESCRIPTION_OF_MIGRATION>`
+
+Note: you cannot use the `--autogenerate` flag as the automatic schema parsing does not work.
+
+Manually populate the upgrade and downgrade in your new migration.
 
 More info can be found here: https://alembic.sqlalchemy.org/en/latest/autogenerate.html
 

backend/alembic/versions/18b5b2524446_add_is_clarification_to_chat_message.py

@@ -0,0 +1,29 @@
+"""add is_clarification to chat_message
+
+Revision ID: 18b5b2524446
+Revises: 87c52ec39f84
+Create Date: 2025-01-16
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "18b5b2524446"
+down_revision = "87c52ec39f84"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "chat_message",
+        sa.Column(
+            "is_clarification", sa.Boolean(), nullable=False, server_default="false"
+        ),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("chat_message", "is_clarification")

backend/alembic/versions/4f8a2b3c1d9e_add_open_url_tool.py

@@ -0,0 +1,104 @@
+"""add_open_url_tool
+
+Revision ID: 4f8a2b3c1d9e
+Revises: a852cbe15577
+Create Date: 2025-11-24 12:00:00.000000
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "4f8a2b3c1d9e"
+down_revision = "a852cbe15577"
+branch_labels = None
+depends_on = None
+
+
+OPEN_URL_TOOL = {
+    "name": "OpenURLTool",
+    "display_name": "Open URL",
+    "description": (
+        "The Open URL Action allows the agent to fetch and read contents of web pages."
+    ),
+    "in_code_tool_id": "OpenURLTool",
+    "enabled": True,
+}
+
+
+def upgrade() -> None:
+    conn = op.get_bind()
+
+    # Check if tool already exists
+    existing = conn.execute(
+        sa.text("SELECT id FROM tool WHERE in_code_tool_id = :in_code_tool_id"),
+        {"in_code_tool_id": OPEN_URL_TOOL["in_code_tool_id"]},
+    ).fetchone()
+
+    if existing:
+        tool_id = existing[0]
+        # Update existing tool
+        conn.execute(
+            sa.text(
+                """
+                UPDATE tool
+                SET name = :name,
+                    display_name = :display_name,
+                    description = :description
+                WHERE in_code_tool_id = :in_code_tool_id
+                """
+            ),
+            OPEN_URL_TOOL,
+        )
+    else:
+        # Insert new tool
+        conn.execute(
+            sa.text(
+                """
+                INSERT INTO tool (name, display_name, description, in_code_tool_id, enabled)
+                VALUES (:name, :display_name, :description, :in_code_tool_id, :enabled)
+                """
+            ),
+            OPEN_URL_TOOL,
+        )
+        # Get the newly inserted tool's id
+        result = conn.execute(
+            sa.text("SELECT id FROM tool WHERE in_code_tool_id = :in_code_tool_id"),
+            {"in_code_tool_id": OPEN_URL_TOOL["in_code_tool_id"]},
+        ).fetchone()
+        tool_id = result[0]  # type: ignore
+
+    # Associate the tool with all existing personas
+    # Get all persona IDs
+    persona_ids = conn.execute(sa.text("SELECT id FROM persona")).fetchall()
+
+    for (persona_id,) in persona_ids:
+        # Check if association already exists
+        exists = conn.execute(
+            sa.text(
+                """
+                SELECT 1 FROM persona__tool
+                WHERE persona_id = :persona_id AND tool_id = :tool_id
+                """
+            ),
+            {"persona_id": persona_id, "tool_id": tool_id},
+        ).fetchone()
+
+        if not exists:
+            conn.execute(
+                sa.text(
+                    """
+                    INSERT INTO persona__tool (persona_id, tool_id)
+                    VALUES (:persona_id, :tool_id)
+                    """
+                ),
+                {"persona_id": persona_id, "tool_id": tool_id},
+            )
+
+
+def downgrade() -> None:
+    # We don't remove the tool on downgrade since it's fine to have it around.
+    # If we upgrade again, it will be a no-op.
+    pass

backend/alembic/versions/5e6f7a8b9c0d_update_default_persona_prompt.py

@@ -0,0 +1,55 @@
+"""update_default_persona_prompt
+
+Revision ID: 5e6f7a8b9c0d
+Revises: 4f8a2b3c1d9e
+Create Date: 2025-11-30 12:00:00.000000
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "5e6f7a8b9c0d"
+down_revision = "4f8a2b3c1d9e"
+branch_labels = None
+depends_on = None
+
+
+DEFAULT_PERSONA_ID = 0
+
+# ruff: noqa: E501, W605 start
+DEFAULT_SYSTEM_PROMPT = """
+You are a highly capable, thoughtful, and precise assistant. Your goal is to deeply understand the user's intent, ask clarifying questions when needed, think step-by-step through complex problems, provide clear and accurate answers, and proactively anticipate helpful follow-up information. Always prioritize being truthful, nuanced, insightful, and efficient.
+
+The current date is [[CURRENT_DATETIME]].{citation_reminder_or_empty}
+
+# Response Style
+You use different text styles, bolding, emojis (sparingly), block quotes, and other formatting to make your responses more readable and engaging.
+You use proper Markdown and LaTeX to format your responses for math, scientific, and chemical formulas, symbols, etc.: '$$\\n[expression]\\n$$' for standalone cases and '\\( [expression] \\)' when inline.
+For code you prefer to use Markdown and specify the language.
+You can use horizontal rules (---) to separate sections of your responses.
+You can use Markdown tables to format your responses for data, lists, and other structured information.
+""".lstrip()
+# ruff: noqa: E501, W605 end
+
+
+def upgrade() -> None:
+    conn = op.get_bind()
+    conn.execute(
+        sa.text(
+            """
+            UPDATE persona
+            SET system_prompt = :system_prompt
+            WHERE id = :persona_id
+            """
+        ),
+        {"system_prompt": DEFAULT_SYSTEM_PROMPT, "persona_id": DEFAULT_PERSONA_ID},
+    )
+
+
+def downgrade() -> None:
+    # We don't revert the system prompt on downgrade since we don't know
+    # what the previous value was. The new prompt is a reasonable default.
+    pass

backend/alembic/versions/7bd55f264e1b_add_display_name_to_model_configuration.py

@@ -0,0 +1,27 @@
+"""Add display_name to model_configuration
+
+Revision ID: 7bd55f264e1b
+Revises: e8f0d2a38171
+Create Date: 2025-12-04
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "7bd55f264e1b"
+down_revision = "e8f0d2a38171"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "model_configuration",
+        sa.Column("display_name", sa.String(), nullable=True),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("model_configuration", "display_name")

backend/alembic/versions/87c52ec39f84_update_default_system_prompt.py

@@ -0,0 +1,55 @@
+"""update_default_system_prompt
+
+Revision ID: 87c52ec39f84
+Revises: 7bd55f264e1b
+Create Date: 2025-12-05 15:54:06.002452
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "87c52ec39f84"
+down_revision = "7bd55f264e1b"
+branch_labels = None
+depends_on = None
+
+
+DEFAULT_PERSONA_ID = 0
+
+# ruff: noqa: E501, W605 start
+DEFAULT_SYSTEM_PROMPT = """
+You are a highly capable, thoughtful, and precise assistant. Your goal is to deeply understand the user's intent, ask clarifying questions when needed, think step-by-step through complex problems, provide clear and accurate answers, and proactively anticipate helpful follow-up information. Always prioritize being truthful, nuanced, insightful, and efficient.
+
+The current date is [[CURRENT_DATETIME]].[[CITATION_GUIDANCE]]
+
+# Response Style
+You use different text styles, bolding, emojis (sparingly), block quotes, and other formatting to make your responses more readable and engaging.
+You use proper Markdown and LaTeX to format your responses for math, scientific, and chemical formulas, symbols, etc.: '$$\\n[expression]\\n$$' for standalone cases and '\\( [expression] \\)' when inline.
+For code you prefer to use Markdown and specify the language.
+You can use horizontal rules (---) to separate sections of your responses.
+You can use Markdown tables to format your responses for data, lists, and other structured information.
+""".lstrip()
+# ruff: noqa: E501, W605 end
+
+
+def upgrade() -> None:
+    conn = op.get_bind()
+    conn.execute(
+        sa.text(
+            """
+            UPDATE persona
+            SET system_prompt = :system_prompt
+            WHERE id = :persona_id
+            """
+        ),
+        {"system_prompt": DEFAULT_SYSTEM_PROMPT, "persona_id": DEFAULT_PERSONA_ID},
+    )
+
+
+def downgrade() -> None:
+    # We don't revert the system prompt on downgrade since we don't know
+    # what the previous value was. The new prompt is a reasonable default.
+    pass

backend/alembic/versions/a852cbe15577_new_chat_history.py

@@ -0,0 +1,417 @@
+"""New Chat History
+
+Revision ID: a852cbe15577
+Revises: 6436661d5b65
+Create Date: 2025-11-08 15:16:37.781308
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.dialects import postgresql
+
+# revision identifiers, used by Alembic.
+revision = "a852cbe15577"
+down_revision = "6436661d5b65"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # 1. Drop old research/agent tables (CASCADE handles dependencies)
+    op.execute("DROP TABLE IF EXISTS research_agent_iteration_sub_step CASCADE")
+    op.execute("DROP TABLE IF EXISTS research_agent_iteration CASCADE")
+    op.execute("DROP TABLE IF EXISTS agent__sub_query__search_doc CASCADE")
+    op.execute("DROP TABLE IF EXISTS agent__sub_query CASCADE")
+    op.execute("DROP TABLE IF EXISTS agent__sub_question CASCADE")
+
+    # 2. ChatMessage table changes
+    # Rename columns and add FKs
+    op.alter_column(
+        "chat_message", "parent_message", new_column_name="parent_message_id"
+    )
+    op.create_foreign_key(
+        "fk_chat_message_parent_message_id",
+        "chat_message",
+        "chat_message",
+        ["parent_message_id"],
+        ["id"],
+    )
+    op.alter_column(
+        "chat_message",
+        "latest_child_message",
+        new_column_name="latest_child_message_id",
+    )
+    op.create_foreign_key(
+        "fk_chat_message_latest_child_message_id",
+        "chat_message",
+        "chat_message",
+        ["latest_child_message_id"],
+        ["id"],
+    )
+
+    # Add new column
+    op.add_column(
+        "chat_message", sa.Column("reasoning_tokens", sa.Text(), nullable=True)
+    )
+
+    # Drop old columns
+    op.drop_column("chat_message", "rephrased_query")
+    op.drop_column("chat_message", "alternate_assistant_id")
+    op.drop_column("chat_message", "overridden_model")
+    op.drop_column("chat_message", "is_agentic")
+    op.drop_column("chat_message", "refined_answer_improvement")
+    op.drop_column("chat_message", "research_type")
+    op.drop_column("chat_message", "research_plan")
+    op.drop_column("chat_message", "research_answer_purpose")
+
+    # 3. ToolCall table changes
+    # Drop the unique constraint first
+    op.drop_constraint("uq_tool_call_message_id", "tool_call", type_="unique")
+
+    # Delete orphaned tool_call rows (those without valid chat_message)
+    op.execute(
+        "DELETE FROM tool_call WHERE message_id NOT IN (SELECT id FROM chat_message)"
+    )
+
+    # Add chat_session_id as nullable first, populate, then make NOT NULL
+    op.add_column(
+        "tool_call",
+        sa.Column("chat_session_id", postgresql.UUID(as_uuid=True), nullable=True),
+    )
+
+    # Populate chat_session_id from the related chat_message
+    op.execute(
+        """
+        UPDATE tool_call
+        SET chat_session_id = chat_message.chat_session_id
+        FROM chat_message
+        WHERE tool_call.message_id = chat_message.id
+    """
+    )
+
+    # Now make it NOT NULL and add FK
+    op.alter_column("tool_call", "chat_session_id", nullable=False)
+    op.create_foreign_key(
+        "fk_tool_call_chat_session_id",
+        "tool_call",
+        "chat_session",
+        ["chat_session_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    # Rename message_id and make nullable, recreate FK with CASCADE
+    op.drop_constraint("tool_call_message_id_fkey", "tool_call", type_="foreignkey")
+    op.alter_column(
+        "tool_call",
+        "message_id",
+        new_column_name="parent_chat_message_id",
+        nullable=True,
+    )
+    op.create_foreign_key(
+        "fk_tool_call_parent_chat_message_id",
+        "tool_call",
+        "chat_message",
+        ["parent_chat_message_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    # Add parent_tool_call_id with FK
+    op.add_column(
+        "tool_call", sa.Column("parent_tool_call_id", sa.Integer(), nullable=True)
+    )
+    op.create_foreign_key(
+        "fk_tool_call_parent_tool_call_id",
+        "tool_call",
+        "tool_call",
+        ["parent_tool_call_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    # Add other new columns
+    op.add_column(
+        "tool_call",
+        sa.Column("turn_number", sa.Integer(), nullable=False, server_default="0"),
+    )
+    op.add_column(
+        "tool_call",
+        sa.Column("tool_call_id", sa.String(), nullable=False, server_default=""),
+    )
+    op.add_column("tool_call", sa.Column("reasoning_tokens", sa.Text(), nullable=True))
+    op.add_column(
+        "tool_call",
+        sa.Column("tool_call_tokens", sa.Integer(), nullable=False, server_default="0"),
+    )
+    op.add_column(
+        "tool_call",
+        sa.Column("generated_images", postgresql.JSONB(), nullable=True),
+    )
+
+    # Rename columns
+    op.alter_column(
+        "tool_call", "tool_arguments", new_column_name="tool_call_arguments"
+    )
+    op.alter_column("tool_call", "tool_result", new_column_name="tool_call_response")
+
+    # Change tool_call_response type from JSONB to Text
+    op.execute(
+        """
+        ALTER TABLE tool_call
+        ALTER COLUMN tool_call_response TYPE TEXT
+        USING tool_call_response::text
+    """
+    )
+
+    # Drop old columns
+    op.drop_column("tool_call", "tool_name")
+
+    # 4. Create new association table
+    op.create_table(
+        "tool_call__search_doc",
+        sa.Column("tool_call_id", sa.Integer(), nullable=False),
+        sa.Column("search_doc_id", sa.Integer(), nullable=False),
+        sa.ForeignKeyConstraint(["tool_call_id"], ["tool_call.id"], ondelete="CASCADE"),
+        sa.ForeignKeyConstraint(
+            ["search_doc_id"], ["search_doc.id"], ondelete="CASCADE"
+        ),
+        sa.PrimaryKeyConstraint("tool_call_id", "search_doc_id"),
+    )
+
+    # 5. Persona table change
+    op.add_column(
+        "persona",
+        sa.Column(
+            "replace_base_system_prompt",
+            sa.Boolean(),
+            nullable=False,
+            server_default="false",
+        ),
+    )
+
+
+def downgrade() -> None:
+    # Reverse persona changes
+    op.drop_column("persona", "replace_base_system_prompt")
+
+    # Drop new association table
+    op.drop_table("tool_call__search_doc")
+
+    # Reverse ToolCall changes
+    op.add_column(
+        "tool_call",
+        sa.Column("tool_name", sa.String(), nullable=False, server_default=""),
+    )
+
+    # Change tool_call_response back to JSONB
+    op.execute(
+        """
+        ALTER TABLE tool_call
+        ALTER COLUMN tool_call_response TYPE JSONB
+        USING tool_call_response::jsonb
+    """
+    )
+
+    op.alter_column("tool_call", "tool_call_response", new_column_name="tool_result")
+    op.alter_column(
+        "tool_call", "tool_call_arguments", new_column_name="tool_arguments"
+    )
+
+    op.drop_column("tool_call", "generated_images")
+    op.drop_column("tool_call", "tool_call_tokens")
+    op.drop_column("tool_call", "reasoning_tokens")
+    op.drop_column("tool_call", "tool_call_id")
+    op.drop_column("tool_call", "turn_number")
+
+    op.drop_constraint(
+        "fk_tool_call_parent_tool_call_id", "tool_call", type_="foreignkey"
+    )
+    op.drop_column("tool_call", "parent_tool_call_id")
+
+    op.drop_constraint(
+        "fk_tool_call_parent_chat_message_id", "tool_call", type_="foreignkey"
+    )
+    op.alter_column(
+        "tool_call",
+        "parent_chat_message_id",
+        new_column_name="message_id",
+        nullable=False,
+    )
+    op.create_foreign_key(
+        "tool_call_message_id_fkey",
+        "tool_call",
+        "chat_message",
+        ["message_id"],
+        ["id"],
+    )
+
+    op.drop_constraint("fk_tool_call_chat_session_id", "tool_call", type_="foreignkey")
+    op.drop_column("tool_call", "chat_session_id")
+
+    op.create_unique_constraint("uq_tool_call_message_id", "tool_call", ["message_id"])
+
+    # Reverse ChatMessage changes
+    # Note: research_answer_purpose and research_type were originally String columns,
+    # not Enum types (see migrations 5ae8240accb3 and f8a9b2c3d4e5)
+    op.add_column(
+        "chat_message",
+        sa.Column("research_answer_purpose", sa.String(), nullable=True),
+    )
+    op.add_column(
+        "chat_message", sa.Column("research_plan", postgresql.JSONB(), nullable=True)
+    )
+    op.add_column(
+        "chat_message",
+        sa.Column("research_type", sa.String(), nullable=True),
+    )
+    op.add_column(
+        "chat_message",
+        sa.Column("refined_answer_improvement", sa.Boolean(), nullable=True),
+    )
+    op.add_column(
+        "chat_message",
+        sa.Column("is_agentic", sa.Boolean(), nullable=False, server_default="false"),
+    )
+    op.add_column(
+        "chat_message", sa.Column("overridden_model", sa.String(), nullable=True)
+    )
+    op.add_column(
+        "chat_message", sa.Column("alternate_assistant_id", sa.Integer(), nullable=True)
+    )
+    op.add_column(
+        "chat_message", sa.Column("rephrased_query", sa.Text(), nullable=True)
+    )
+
+    op.drop_column("chat_message", "reasoning_tokens")
+
+    op.drop_constraint(
+        "fk_chat_message_latest_child_message_id", "chat_message", type_="foreignkey"
+    )
+    op.alter_column(
+        "chat_message",
+        "latest_child_message_id",
+        new_column_name="latest_child_message",
+    )
+
+    op.drop_constraint(
+        "fk_chat_message_parent_message_id", "chat_message", type_="foreignkey"
+    )
+    op.alter_column(
+        "chat_message", "parent_message_id", new_column_name="parent_message"
+    )
+
+    # Recreate agent sub question and sub query tables
+    op.create_table(
+        "agent__sub_question",
+        sa.Column("id", sa.Integer(), primary_key=True),
+        sa.Column("primary_question_id", sa.Integer(), nullable=False),
+        sa.Column("chat_session_id", postgresql.UUID(as_uuid=True), nullable=False),
+        sa.Column("sub_question", sa.Text(), nullable=False),
+        sa.Column("level", sa.Integer(), nullable=False),
+        sa.Column("level_question_num", sa.Integer(), nullable=False),
+        sa.Column(
+            "time_created",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.Column("sub_answer", sa.Text(), nullable=False),
+        sa.Column("sub_question_doc_results", postgresql.JSONB(), nullable=False),
+        sa.ForeignKeyConstraint(
+            ["primary_question_id"], ["chat_message.id"], ondelete="CASCADE"
+        ),
+        sa.ForeignKeyConstraint(["chat_session_id"], ["chat_session.id"]),
+        sa.PrimaryKeyConstraint("id"),
+    )
+
+    op.create_table(
+        "agent__sub_query",
+        sa.Column("id", sa.Integer(), primary_key=True),
+        sa.Column("parent_question_id", sa.Integer(), nullable=False),
+        sa.Column("chat_session_id", postgresql.UUID(as_uuid=True), nullable=False),
+        sa.Column("sub_query", sa.Text(), nullable=False),
+        sa.Column(
+            "time_created",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.ForeignKeyConstraint(
+            ["parent_question_id"], ["agent__sub_question.id"], ondelete="CASCADE"
+        ),
+        sa.ForeignKeyConstraint(["chat_session_id"], ["chat_session.id"]),
+        sa.PrimaryKeyConstraint("id"),
+    )
+
+    op.create_table(
+        "agent__sub_query__search_doc",
+        sa.Column("sub_query_id", sa.Integer(), nullable=False),
+        sa.Column("search_doc_id", sa.Integer(), nullable=False),
+        sa.ForeignKeyConstraint(
+            ["sub_query_id"], ["agent__sub_query.id"], ondelete="CASCADE"
+        ),
+        sa.ForeignKeyConstraint(["search_doc_id"], ["search_doc.id"]),
+        sa.PrimaryKeyConstraint("sub_query_id", "search_doc_id"),
+    )
+
+    # Recreate research agent tables
+    op.create_table(
+        "research_agent_iteration",
+        sa.Column("id", sa.Integer(), autoincrement=True, nullable=False),
+        sa.Column("primary_question_id", sa.Integer(), nullable=False),
+        sa.Column("iteration_nr", sa.Integer(), nullable=False),
+        sa.Column(
+            "created_at",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.Column("purpose", sa.String(), nullable=True),
+        sa.Column("reasoning", sa.String(), nullable=True),
+        sa.ForeignKeyConstraint(
+            ["primary_question_id"], ["chat_message.id"], ondelete="CASCADE"
+        ),
+        sa.PrimaryKeyConstraint("id"),
+        sa.UniqueConstraint(
+            "primary_question_id",
+            "iteration_nr",
+            name="_research_agent_iteration_unique_constraint",
+        ),
+    )
+
+    op.create_table(
+        "research_agent_iteration_sub_step",
+        sa.Column("id", sa.Integer(), autoincrement=True, nullable=False),
+        sa.Column("primary_question_id", sa.Integer(), nullable=False),
+        sa.Column("iteration_nr", sa.Integer(), nullable=False),
+        sa.Column("iteration_sub_step_nr", sa.Integer(), nullable=False),
+        sa.Column(
+            "created_at",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.Column("sub_step_instructions", sa.String(), nullable=True),
+        sa.Column("sub_step_tool_id", sa.Integer(), nullable=True),
+        sa.Column("reasoning", sa.String(), nullable=True),
+        sa.Column("sub_answer", sa.String(), nullable=True),
+        sa.Column("cited_doc_results", postgresql.JSONB(), nullable=False),
+        sa.Column("claims", postgresql.JSONB(), nullable=True),
+        sa.Column("is_web_fetch", sa.Boolean(), nullable=True),
+        sa.Column("queries", postgresql.JSONB(), nullable=True),
+        sa.Column("generated_images", postgresql.JSONB(), nullable=True),
+        sa.Column("additional_data", postgresql.JSONB(), nullable=True),
+        sa.Column("file_ids", postgresql.JSONB(), nullable=True),
+        sa.ForeignKeyConstraint(
+            ["primary_question_id", "iteration_nr"],
+            [
+                "research_agent_iteration.primary_question_id",
+                "research_agent_iteration.iteration_nr",
+            ],
+            ondelete="CASCADE",
+        ),
+        sa.ForeignKeyConstraint(["sub_step_tool_id"], ["tool.id"], ondelete="SET NULL"),
+        sa.PrimaryKeyConstraint("id"),
+    )

backend/alembic/versions/e8f0d2a38171_add_status_to_mcp_server_and_make_auth_.py

@@ -0,0 +1,115 @@
+"""add status to mcp server and make auth fields nullable
+
+Revision ID: e8f0d2a38171
+Revises: ed9e44312505
+Create Date: 2025-11-28 11:15:37.667340
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from onyx.db.enums import (  # type: ignore[import-untyped]
+    MCPTransport,
+    MCPAuthenticationType,
+    MCPAuthenticationPerformer,
+    MCPServerStatus,
+)
+
+# revision identifiers, used by Alembic.
+revision = "e8f0d2a38171"
+down_revision = "ed9e44312505"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # Make auth fields nullable
+    op.alter_column(
+        "mcp_server",
+        "transport",
+        existing_type=sa.Enum(MCPTransport, name="mcp_transport", native_enum=False),
+        nullable=True,
+    )
+
+    op.alter_column(
+        "mcp_server",
+        "auth_type",
+        existing_type=sa.Enum(
+            MCPAuthenticationType, name="mcp_authentication_type", native_enum=False
+        ),
+        nullable=True,
+    )
+
+    op.alter_column(
+        "mcp_server",
+        "auth_performer",
+        existing_type=sa.Enum(
+            MCPAuthenticationPerformer,
+            name="mcp_authentication_performer",
+            native_enum=False,
+        ),
+        nullable=True,
+    )
+
+    # Add status column with default
+    op.add_column(
+        "mcp_server",
+        sa.Column(
+            "status",
+            sa.Enum(MCPServerStatus, name="mcp_server_status", native_enum=False),
+            nullable=False,
+            server_default="CREATED",
+        ),
+    )
+
+    # For existing records, mark status as CONNECTED
+    bind = op.get_bind()
+    bind.execute(
+        sa.text(
+            """
+        UPDATE mcp_server
+        SET status = 'CONNECTED'
+        WHERE status != 'CONNECTED'
+        and admin_connection_config_id IS NOT NULL
+        """
+        )
+    )
+
+
+def downgrade() -> None:
+    # Remove status column
+    op.drop_column("mcp_server", "status")
+
+    # Make auth fields non-nullable (set defaults first)
+    op.execute(
+        "UPDATE mcp_server SET transport = 'STREAMABLE_HTTP' WHERE transport IS NULL"
+    )
+    op.execute("UPDATE mcp_server SET auth_type = 'NONE' WHERE auth_type IS NULL")
+    op.execute(
+        "UPDATE mcp_server SET auth_performer = 'ADMIN' WHERE auth_performer IS NULL"
+    )
+
+    op.alter_column(
+        "mcp_server",
+        "transport",
+        existing_type=sa.Enum(MCPTransport, name="mcp_transport", native_enum=False),
+        nullable=False,
+    )
+    op.alter_column(
+        "mcp_server",
+        "auth_type",
+        existing_type=sa.Enum(
+            MCPAuthenticationType, name="mcp_authentication_type", native_enum=False
+        ),
+        nullable=False,
+    )
+    op.alter_column(
+        "mcp_server",
+        "auth_performer",
+        existing_type=sa.Enum(
+            MCPAuthenticationPerformer,
+            name="mcp_authentication_performer",
+            native_enum=False,
+        ),
+        nullable=False,
+    )

backend/alembic/versions/ed9e44312505_add_icon_name_field.py

@@ -0,0 +1,34 @@
+"""Add icon_name field
+
+Revision ID: ed9e44312505
+Revises: 5e6f7a8b9c0d
+Create Date: 2025-12-03 16:35:07.828393
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "ed9e44312505"
+down_revision = "5e6f7a8b9c0d"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # Add icon_name column
+    op.add_column("persona", sa.Column("icon_name", sa.String(), nullable=True))
+
+    # Remove old icon columns
+    op.drop_column("persona", "icon_shape")
+    op.drop_column("persona", "icon_color")
+
+
+def downgrade() -> None:
+    # Re-add old icon columns
+    op.add_column("persona", sa.Column("icon_color", sa.String(), nullable=True))
+    op.add_column("persona", sa.Column("icon_shape", sa.Integer(), nullable=True))
+
+    # Remove icon_name column
+    op.drop_column("persona", "icon_name")

backend/ee/onyx/configs/app_configs.py

@@ -41,6 +41,10 @@ CONFLUENCE_ANONYMOUS_ACCESS_IS_PUBLIC = (
 JIRA_PERMISSION_DOC_SYNC_FREQUENCY = int(
     os.environ.get("JIRA_PERMISSION_DOC_SYNC_FREQUENCY") or 30 * 60
 )
+# In seconds, default is 30 minutes
+JIRA_PERMISSION_GROUP_SYNC_FREQUENCY = int(
+    os.environ.get("JIRA_PERMISSION_GROUP_SYNC_FREQUENCY") or 30 * 60
+)
 
 
 #####

backend/ee/onyx/db/analytics.py

@@ -199,10 +199,7 @@ def fetch_persona_message_analytics(
             ChatMessage.chat_session_id == ChatSession.id,
         )
         .where(
-            or_(
-                ChatMessage.alternate_assistant_id == persona_id,
-                ChatSession.persona_id == persona_id,
-            ),
+            ChatSession.persona_id == persona_id,
             ChatMessage.time_sent >= start,
             ChatMessage.time_sent <= end,
             ChatMessage.message_type == MessageType.ASSISTANT,
@@ -231,10 +228,7 @@ def fetch_persona_unique_users(
             ChatMessage.chat_session_id == ChatSession.id,
         )
         .where(
-            or_(
-                ChatMessage.alternate_assistant_id == persona_id,
-                ChatSession.persona_id == persona_id,
-            ),
+            ChatSession.persona_id == persona_id,
             ChatMessage.time_sent >= start,
             ChatMessage.time_sent <= end,
             ChatMessage.message_type == MessageType.ASSISTANT,
@@ -265,10 +259,7 @@ def fetch_assistant_message_analytics(
             ChatMessage.chat_session_id == ChatSession.id,
         )
         .where(
-            or_(
-                ChatMessage.alternate_assistant_id == assistant_id,
-                ChatSession.persona_id == assistant_id,
-            ),
+            ChatSession.persona_id == assistant_id,
             ChatMessage.time_sent >= start,
             ChatMessage.time_sent <= end,
             ChatMessage.message_type == MessageType.ASSISTANT,
@@ -299,10 +290,7 @@ def fetch_assistant_unique_users(
             ChatMessage.chat_session_id == ChatSession.id,
         )
         .where(
-            or_(
-                ChatMessage.alternate_assistant_id == assistant_id,
-                ChatSession.persona_id == assistant_id,
-            ),
+            ChatSession.persona_id == assistant_id,
             ChatMessage.time_sent >= start,
             ChatMessage.time_sent <= end,
             ChatMessage.message_type == MessageType.ASSISTANT,
@@ -332,10 +320,7 @@ def fetch_assistant_unique_users_total(
             ChatMessage.chat_session_id == ChatSession.id,
         )
         .where(
-            or_(
-                ChatMessage.alternate_assistant_id == assistant_id,
-                ChatSession.persona_id == assistant_id,
-            ),
+            ChatSession.persona_id == assistant_id,
             ChatMessage.time_sent >= start,
             ChatMessage.time_sent <= end,
             ChatMessage.message_type == MessageType.ASSISTANT,

backend/ee/onyx/db/usage_export.py

@@ -55,18 +55,7 @@ def get_empty_chat_messages_entries__paginated(
 
             # Get assistant name (from session persona, or alternate if specified)
             assistant_name = None
-            if message.alternate_assistant_id:
-                # If there's an alternate assistant, we need to fetch it
-                from onyx.db.models import Persona
-
-                alternate_persona = (
-                    db_session.query(Persona)
-                    .filter(Persona.id == message.alternate_assistant_id)
-                    .first()
-                )
-                if alternate_persona:
-                    assistant_name = alternate_persona.name
-            elif chat_session.persona:
+            if chat_session.persona:
                 assistant_name = chat_session.persona.name
 
             message_skeletons.append(

backend/ee/onyx/db/user_group.py

@@ -8,6 +8,7 @@ from sqlalchemy import func
 from sqlalchemy import Select
 from sqlalchemy import select
 from sqlalchemy import update
+from sqlalchemy.dialects.postgresql import insert
 from sqlalchemy.orm import Session
 
 from ee.onyx.server.user_group.models import SetCuratorRequest
@@ -362,14 +363,29 @@ def _check_user_group_is_modifiable(user_group: UserGroup) -> None:
 
 def _add_user__user_group_relationships__no_commit(
     db_session: Session, user_group_id: int, user_ids: list[UUID]
-) -> list[User__UserGroup]:
-    """NOTE: does not commit the transaction."""
-    relationships = [
-        User__UserGroup(user_id=user_id, user_group_id=user_group_id)
-        for user_id in user_ids
-    ]
-    db_session.add_all(relationships)
-    return relationships
+) -> None:
+    """NOTE: does not commit the transaction.
+
+    This function is idempotent - it will skip users who are already in the group
+    to avoid duplicate key violations during concurrent operations or re-syncs.
+    Uses ON CONFLICT DO NOTHING to keep inserts atomic under concurrency.
+    """
+    if not user_ids:
+        return
+
+    insert_stmt = (
+        insert(User__UserGroup)
+        .values(
+            [
+                {"user_id": user_id, "user_group_id": user_group_id}
+                for user_id in user_ids
+            ]
+        )
+        .on_conflict_do_nothing(
+            index_elements=[User__UserGroup.user_group_id, User__UserGroup.user_id]
+        )
+    )
+    db_session.execute(insert_stmt)
 
 
 def _add_user_group__cc_pair_relationships__no_commit(

backend/ee/onyx/external_permissions/confluence/group_sync.py

@@ -3,12 +3,15 @@ from collections.abc import Generator
 from ee.onyx.db.external_perm import ExternalUserGroup
 from ee.onyx.external_permissions.confluence.constants import ALL_CONF_EMAILS_GROUP_NAME
 from onyx.background.error_logging import emit_background_error
+from onyx.configs.app_configs import CONFLUENCE_USE_ONYX_USERS_FOR_GROUP_SYNC
 from onyx.connectors.confluence.onyx_confluence import (
     get_user_email_from_username__server,
 )
 from onyx.connectors.confluence.onyx_confluence import OnyxConfluence
 from onyx.connectors.credentials_provider import OnyxDBCredentialsProvider
+from onyx.db.engine.sql_engine import get_session_with_current_tenant
 from onyx.db.models import ConnectorCredentialPair
+from onyx.db.users import get_all_users
 from onyx.utils.logger import setup_logger
 
 logger = setup_logger()
@@ -19,7 +22,7 @@ def _build_group_member_email_map(
 ) -> dict[str, set[str]]:
     group_member_emails: dict[str, set[str]] = {}
     for user in confluence_client.paginated_cql_user_retrieval():
-        logger.debug(f"Processing groups for user: {user}")
+        logger.info(f"Processing groups for user: {user}")
 
         email = user.email
         if not email:
@@ -31,6 +34,8 @@ def _build_group_member_email_map(
                     confluence_client=confluence_client,
                     user_name=user_name,
                 )
+            else:
+                logger.error(f"user result missing username field: {user}")
 
         if not email:
             # If we still don't have an email, skip this user
@@ -64,6 +69,92 @@ def _build_group_member_email_map(
     return group_member_emails
 
 
+def _build_group_member_email_map_from_onyx_users(
+    confluence_client: OnyxConfluence,
+) -> dict[str, set[str]]:
+    """Hacky, but it's the only way to do this as long as the
+    Confluence APIs are broken.
+
+    This is fixed in Confluence Data Center 10.1.0, so first choice
+    is to tell users to upgrade to 10.1.0.
+    https://jira.atlassian.com/browse/CONFSERVER-95999
+    """
+    with get_session_with_current_tenant() as db_session:
+        # don't include external since they are handled by the "through confluence"
+        # user fetching mechanism
+        user_emails = [
+            user.email for user in get_all_users(db_session, include_external=False)
+        ]
+
+    def _infer_username_from_email(email: str) -> str:
+        return email.split("@")[0]
+
+    group_member_emails: dict[str, set[str]] = {}
+    for email in user_emails:
+        logger.info(f"Processing groups for user with email: {email}")
+        try:
+            user_name = _infer_username_from_email(email)
+            response = confluence_client.get_user_details_by_username(user_name)
+            user_key = response.get("userKey")
+            if not user_key:
+                logger.error(f"User key not found for user with email {email}")
+                continue
+
+            all_users_groups: set[str] = set()
+            for group in confluence_client.paginated_groups_by_user_retrieval(user_key):
+                # group name uniqueness is enforced by Confluence, so we can use it as a group ID
+                group_id = group["name"]
+                group_member_emails.setdefault(group_id, set()).add(email)
+                all_users_groups.add(group_id)
+
+            if not all_users_groups:
+                msg = f"No groups found for user with email: {email}"
+                logger.error(msg)
+            else:
+                logger.info(
+                    f"Found groups {all_users_groups} for user with email {email}"
+                )
+        except Exception:
+            logger.exception(f"Error getting user details for user with email {email}")
+
+    return group_member_emails
+
+
+def _build_final_group_to_member_email_map(
+    confluence_client: OnyxConfluence,
+    cc_pair_id: int,
+    # if set, will infer confluence usernames from onyx users in addition to using the
+    # confluence users API. This is a hacky workaround for the fact that the Confluence
+    # users API is broken before Confluence Data Center 10.1.0.
+    use_onyx_users: bool = CONFLUENCE_USE_ONYX_USERS_FOR_GROUP_SYNC,
+) -> dict[str, set[str]]:
+    group_to_member_email_map = _build_group_member_email_map(
+        confluence_client=confluence_client,
+        cc_pair_id=cc_pair_id,
+    )
+    group_to_member_email_map_from_onyx_users = (
+        (
+            _build_group_member_email_map_from_onyx_users(
+                confluence_client=confluence_client,
+            )
+        )
+        if use_onyx_users
+        else {}
+    )
+
+    all_group_ids = set(group_to_member_email_map.keys()) | set(
+        group_to_member_email_map_from_onyx_users.keys()
+    )
+    final_group_to_member_email_map = {}
+    for group_id in all_group_ids:
+        group_member_emails = group_to_member_email_map.get(
+            group_id, set()
+        ) | group_to_member_email_map_from_onyx_users.get(group_id, set())
+        final_group_to_member_email_map[group_id] = group_member_emails
+
+    return final_group_to_member_email_map
+
+
 def confluence_group_sync(
     tenant_id: str,
     cc_pair: ConnectorCredentialPair,
@@ -87,13 +178,12 @@ def confluence_group_sync(
     confluence_client._probe_connection(**probe_kwargs)
     confluence_client._initialize_connection(**final_kwargs)
 
-    group_member_email_map = _build_group_member_email_map(
-        confluence_client=confluence_client,
-        cc_pair_id=cc_pair.id,
+    group_to_member_email_map = _build_final_group_to_member_email_map(
+        confluence_client, cc_pair.id
     )
 
     all_found_emails = set()
-    for group_id, group_member_emails in group_member_email_map.items():
+    for group_id, group_member_emails in group_to_member_email_map.items():
         yield (
             ExternalUserGroup(
                 id=group_id,

backend/ee/onyx/external_permissions/jira/group_sync.py

@@ -0,0 +1,136 @@
+from collections.abc import Generator
+
+from jira import JIRA
+
+from ee.onyx.db.external_perm import ExternalUserGroup
+from onyx.connectors.jira.utils import build_jira_client
+from onyx.db.models import ConnectorCredentialPair
+from onyx.utils.logger import setup_logger
+
+logger = setup_logger()
+
+
+def _get_jira_group_members_email(
+    jira_client: JIRA,
+    group_name: str,
+) -> list[str]:
+    """Get all member emails for a Jira group.
+
+    Filters out app accounts (bots, integrations) and only returns real user emails.
+    """
+    emails: list[str] = []
+
+    try:
+        # group_members returns an OrderedDict of account_id -> member_info
+        members = jira_client.group_members(group=group_name)
+
+        if not members:
+            logger.warning(f"No members found for group {group_name}")
+            return emails
+
+        for account_id, member_info in members.items():
+            # member_info is a dict with keys like 'fullname', 'email', 'active'
+            email = member_info.get("email")
+
+            # Skip "hidden" emails - these are typically app accounts
+            if email and email != "hidden":
+                emails.append(email)
+            else:
+                # For cloud, we might need to fetch user details separately
+                try:
+                    user = jira_client.user(id=account_id)
+
+                    # Skip app accounts (bots, integrations, etc.)
+                    if hasattr(user, "accountType") and user.accountType == "app":
+                        logger.info(
+                            f"Skipping app account {account_id} for group {group_name}"
+                        )
+                        continue
+
+                    if hasattr(user, "emailAddress") and user.emailAddress:
+                        emails.append(user.emailAddress)
+                    else:
+                        logger.warning(f"User {account_id} has no email address")
+                except Exception as e:
+                    logger.warning(
+                        f"Could not fetch email for user {account_id} in group {group_name}: {e}"
+                    )
+
+    except Exception as e:
+        logger.error(f"Error fetching members for group {group_name}: {e}")
+
+    return emails
+
+
+def _build_group_member_email_map(
+    jira_client: JIRA,
+) -> dict[str, set[str]]:
+    """Build a map of group names to member emails."""
+    group_member_emails: dict[str, set[str]] = {}
+
+    try:
+        # Get all groups from Jira - returns a list of group name strings
+        group_names = jira_client.groups()
+
+        if not group_names:
+            logger.warning("No groups found in Jira")
+            return group_member_emails
+
+        logger.info(f"Found {len(group_names)} groups in Jira")
+
+        for group_name in group_names:
+            if not group_name:
+                continue
+
+            member_emails = _get_jira_group_members_email(
+                jira_client=jira_client,
+                group_name=group_name,
+            )
+
+            if member_emails:
+                group_member_emails[group_name] = set(member_emails)
+                logger.debug(
+                    f"Found {len(member_emails)} members for group {group_name}"
+                )
+            else:
+                logger.debug(f"No members found for group {group_name}")
+
+    except Exception as e:
+        logger.error(f"Error building group member email map: {e}")
+
+    return group_member_emails
+
+
+def jira_group_sync(
+    tenant_id: str,
+    cc_pair: ConnectorCredentialPair,
+) -> Generator[ExternalUserGroup, None, None]:
+    """
+    Sync Jira groups and their members.
+
+    This function fetches all groups from Jira and yields ExternalUserGroup
+    objects containing the group ID and member emails.
+    """
+    jira_base_url = cc_pair.connector.connector_specific_config.get("jira_base_url", "")
+    scoped_token = cc_pair.connector.connector_specific_config.get(
+        "scoped_token", False
+    )
+
+    if not jira_base_url:
+        raise ValueError("No jira_base_url found in connector config")
+
+    jira_client = build_jira_client(
+        credentials=cc_pair.credential.credential_json,
+        jira_base=jira_base_url,
+        scoped_token=scoped_token,
+    )
+
+    group_member_email_map = _build_group_member_email_map(jira_client=jira_client)
+    if not group_member_email_map:
+        raise ValueError(f"No groups with members found for cc_pair_id={cc_pair.id}")
+
+    for group_id, group_member_emails in group_member_email_map.items():
+        yield ExternalUserGroup(
+            id=group_id,
+            user_emails=list(group_member_emails),
+        )

backend/ee/onyx/external_permissions/jira/page_access.py

@@ -16,6 +16,10 @@ HolderMap = dict[str, list[Holder]]
 logger = setup_logger()
 
 
+def _get_role_id(holder: Holder) -> str | None:
+    return holder.get("value") or holder.get("parameter")
+
+
 def _build_holder_map(permissions: list[dict]) -> dict[str, list[Holder]]:
     """
     A "Holder" in JIRA is a person / entity who "holds" the corresponding permission.
@@ -110,80 +114,137 @@ def _get_user_emails(user_holders: list[Holder]) -> list[str]:
     return emails
 
 
-def _get_user_emails_from_project_roles(
+def _get_user_emails_and_groups_from_project_roles(
     jira_client: JIRA,
     jira_project: str,
     project_role_holders: list[Holder],
-) -> list[str]:
-    # NOTE (@raunakab) a `parallel_yield` may be helpful here...?
+) -> tuple[list[str], list[str]]:
+    """
+    Get user emails and group names from project roles.
+    Returns a tuple of (emails, group_names).
+    """
+    # Get role IDs - Cloud uses "value", Data Center uses "parameter"
+    role_ids = []
+    for holder in project_role_holders:
+        role_id = _get_role_id(holder)
+        if role_id:
+            role_ids.append(role_id)
+        else:
+            logger.warning(f"No value or parameter in projectRole holder: {holder}")
+
     roles = [
-        jira_client.project_role(project=jira_project, id=project_role_holder["value"])
-        for project_role_holder in project_role_holders
-        if "value" in project_role_holder
+        jira_client.project_role(project=jira_project, id=role_id)
+        for role_id in role_ids
     ]
 
     emails = []
+    groups = []
 
     for role in roles:
         if not hasattr(role, "actors"):
+            logger.warning(f"Project role {role} has no actors attribute")
             continue
 
         for actor in role.actors:
-            if not hasattr(actor, "actorUser") or not hasattr(
-                actor.actorUser, "accountId"
-            ):
+            # Handle group actors
+            if hasattr(actor, "actorGroup"):
+                group_name = getattr(actor.actorGroup, "name", None) or getattr(
+                    actor.actorGroup, "displayName", None
+                )
+                if group_name:
+                    groups.append(group_name)
                 continue
 
-            user = jira_client.user(id=actor.actorUser.accountId)
-            if not hasattr(user, "accountType") or user.accountType != "atlassian":
+            # Handle user actors
+            if hasattr(actor, "actorUser"):
+                account_id = getattr(actor.actorUser, "accountId", None)
+                if not account_id:
+                    logger.error(f"No accountId in actorUser: {actor.actorUser}")
+                    continue
+
+                user = jira_client.user(id=account_id)
+                if not hasattr(user, "accountType") or user.accountType != "atlassian":
+                    logger.info(
+                        f"Skipping user {account_id} because it is not an atlassian user"
+                    )
+                    continue
+
+                if not hasattr(user, "emailAddress"):
+                    msg = f"User's email address was not able to be retrieved;  {actor.actorUser.accountId=}"
+                    if hasattr(user, "displayName"):
+                        msg += f" {actor.displayName=}"
+                    logger.warning(msg)
+                    continue
+
+                emails.append(user.emailAddress)
                 continue
 
-            if not hasattr(user, "emailAddress"):
-                msg = f"User's email address was not able to be retrieved;  {actor.actorUser.accountId=}"
-                if hasattr(user, "displayName"):
-                    msg += f" {actor.displayName=}"
-                logger.warn(msg)
-                continue
+            logger.debug(f"Skipping actor type: {actor}")
 
-            emails.append(user.emailAddress)
-
-    return emails
+    return emails, groups
 
 
 def _build_external_access_from_holder_map(
     jira_client: JIRA, jira_project: str, holder_map: HolderMap
 ) -> ExternalAccess:
     """
-    # Note:
-        If the `holder_map` contains an instance of "anyone", then this is a public JIRA project.
-        Otherwise, we fetch the "projectRole"s (i.e., the user-groups in JIRA speak), and the user emails.
-    """
+    Build ExternalAccess from the holder map.
 
+    Holder types handled:
+        - "anyone": Public project, anyone can access
+        - "applicationRole": All users with a Jira license can access (treated as public)
+        - "user": Specific users with access
+        - "projectRole": Project roles containing users and/or groups
+        - "group": Groups directly assigned in the permission scheme
+    """
+    # Public access - anyone can view
     if "anyone" in holder_map:
         return ExternalAccess(
             external_user_emails=set(), external_user_group_ids=set(), is_public=True
         )
 
+    # applicationRole means all users with a Jira license can access - treat as public
+    if "applicationRole" in holder_map:
+        return ExternalAccess(
+            external_user_emails=set(), external_user_group_ids=set(), is_public=True
+        )
+
+    # Get emails from explicit user holders
     user_emails = (
         _get_user_emails(user_holders=holder_map["user"])
         if "user" in holder_map
         else []
     )
-    project_role_user_emails = (
-        _get_user_emails_from_project_roles(
-            jira_client=jira_client,
-            jira_project=jira_project,
-            project_role_holders=holder_map["projectRole"],
+
+    # Get emails and groups from project roles
+    project_role_user_emails: list[str] = []
+    project_role_groups: list[str] = []
+    if "projectRole" in holder_map:
+        project_role_user_emails, project_role_groups = (
+            _get_user_emails_and_groups_from_project_roles(
+                jira_client=jira_client,
+                jira_project=jira_project,
+                project_role_holders=holder_map["projectRole"],
+            )
         )
-        if "projectRole" in holder_map
-        else []
-    )
+
+    # Get groups directly assigned in permission scheme (common in Data Center)
+    # Format: {'type': 'group', 'parameter': 'group-name', 'expand': 'group'}
+    direct_groups: list[str] = []
+    if "group" in holder_map:
+        for group_holder in holder_map["group"]:
+            group_name = _get_role_id(group_holder)
+            if group_name:
+                direct_groups.append(group_name)
+            else:
+                logger.error(f"No parameter/value in group holder: {group_holder}")
 
     external_user_emails = set(user_emails + project_role_user_emails)
+    external_user_group_ids = set(project_role_groups + direct_groups)
 
     return ExternalAccess(
         external_user_emails=external_user_emails,
-        external_user_group_ids=set(),
+        external_user_group_ids=external_user_group_ids,
         is_public=False,
     )
 
@@ -197,9 +258,11 @@ def get_project_permissions(
     )
 
     if not hasattr(project_permissions, "permissions"):
+        logger.error(f"Project {jira_project} has no permissions attribute")
         return None
 
     if not isinstance(project_permissions.permissions, list):
+        logger.error(f"Project {jira_project} permissions is not a list")
         return None
 
     holder_map = _build_holder_map(permissions=project_permissions.permissions)

backend/ee/onyx/external_permissions/sharepoint/permission_utils.py

@@ -15,6 +15,7 @@ from ee.onyx.db.external_perm import ExternalUserGroup
 from onyx.access.models import ExternalAccess
 from onyx.access.utils import build_ext_group_name_for_onyx
 from onyx.configs.constants import DocumentSource
+from onyx.connectors.sharepoint.connector import SHARED_DOCUMENTS_MAP_REVERSE
 from onyx.connectors.sharepoint.connector import sleep_and_retry
 from onyx.utils.logger import setup_logger
 
@@ -511,8 +512,8 @@ def get_external_access_from_sharepoint(
                 f"Failed to get SharePoint list item ID for item {drive_item.id}"
             )
 
-        if drive_name == "Shared Documents":
-            drive_name = "Documents"
+        if drive_name in SHARED_DOCUMENTS_MAP_REVERSE:
+            drive_name = SHARED_DOCUMENTS_MAP_REVERSE[drive_name]
 
         item = client_context.web.lists.get_by_title(drive_name).items.get_by_id(
             item_id

backend/ee/onyx/external_permissions/sync_params.py

@@ -11,6 +11,7 @@ from ee.onyx.configs.app_configs import GITHUB_PERMISSION_DOC_SYNC_FREQUENCY
 from ee.onyx.configs.app_configs import GITHUB_PERMISSION_GROUP_SYNC_FREQUENCY
 from ee.onyx.configs.app_configs import GOOGLE_DRIVE_PERMISSION_GROUP_SYNC_FREQUENCY
 from ee.onyx.configs.app_configs import JIRA_PERMISSION_DOC_SYNC_FREQUENCY
+from ee.onyx.configs.app_configs import JIRA_PERMISSION_GROUP_SYNC_FREQUENCY
 from ee.onyx.configs.app_configs import SHAREPOINT_PERMISSION_DOC_SYNC_FREQUENCY
 from ee.onyx.configs.app_configs import SHAREPOINT_PERMISSION_GROUP_SYNC_FREQUENCY
 from ee.onyx.configs.app_configs import SLACK_PERMISSION_DOC_SYNC_FREQUENCY
@@ -23,6 +24,7 @@ from ee.onyx.external_permissions.gmail.doc_sync import gmail_doc_sync
 from ee.onyx.external_permissions.google_drive.doc_sync import gdrive_doc_sync
 from ee.onyx.external_permissions.google_drive.group_sync import gdrive_group_sync
 from ee.onyx.external_permissions.jira.doc_sync import jira_doc_sync
+from ee.onyx.external_permissions.jira.group_sync import jira_group_sync
 from ee.onyx.external_permissions.perm_sync_types import CensoringFuncType
 from ee.onyx.external_permissions.perm_sync_types import DocSyncFuncType
 from ee.onyx.external_permissions.perm_sync_types import FetchAllDocumentsFunction
@@ -110,6 +112,11 @@ _SOURCE_TO_SYNC_CONFIG: dict[DocumentSource, SyncConfig] = {
             doc_sync_func=jira_doc_sync,
             initial_index_should_sync=True,
         ),
+        group_sync_config=GroupSyncConfig(
+            group_sync_frequency=JIRA_PERMISSION_GROUP_SYNC_FREQUENCY,
+            group_sync_func=jira_group_sync,
+            group_sync_is_cc_pair_agnostic=True,
+        ),
     ),
     # Groups are not needed for Slack.
     # All channel access is done at the individual user level.

backend/ee/onyx/server/query_and_chat/chat_backend.py

@@ -8,12 +8,10 @@ from ee.onyx.server.query_and_chat.models import (
     BasicCreateChatMessageWithHistoryRequest,
 )
 from onyx.auth.users import current_user
-from onyx.chat.chat_utils import combine_message_thread
-from onyx.chat.chat_utils import create_chat_chain
+from onyx.chat.chat_utils import create_chat_history_chain
 from onyx.chat.models import ChatBasicResponse
 from onyx.chat.process_message import gather_stream
 from onyx.chat.process_message import stream_chat_message_objects
-from onyx.configs.chat_configs import CHAT_TARGET_CHUNK_PERCENTAGE
 from onyx.configs.constants import MessageType
 from onyx.context.search.models import OptionalSearchSetting
 from onyx.context.search.models import RetrievalDetails
@@ -24,7 +22,6 @@ from onyx.db.engine.sql_engine import get_session
 from onyx.db.models import User
 from onyx.llm.factory import get_llms_for_persona
 from onyx.natural_language_processing.utils import get_tokenizer
-from onyx.secondary_llm_flows.query_expansion import thread_based_query_rephrase
 from onyx.server.query_and_chat.models import CreateChatMessageRequest
 from onyx.utils.logger import setup_logger
 
@@ -69,9 +66,9 @@ def handle_simplified_chat_message(
         chat_session_id = chat_message_req.chat_session_id
 
     try:
-        parent_message, _ = create_chat_chain(
+        parent_message = create_chat_history_chain(
             chat_session_id=chat_session_id, db_session=db_session
-        )
+        )[-1]
     except Exception:
         parent_message = get_or_create_root_message(
             chat_session_id=chat_session_id, db_session=db_session
@@ -168,8 +165,6 @@ def handle_send_message_simple_with_history(
         provider_type=llm.config.model_provider,
     )
 
-    max_history_tokens = int(llm.config.max_input_tokens * CHAT_TARGET_CHUNK_PERCENTAGE)
-
     # Every chat Session begins with an empty root message
     root_message = get_or_create_root_message(
         chat_session_id=chat_session.id, db_session=db_session
@@ -188,17 +183,6 @@ def handle_send_message_simple_with_history(
         )
     db_session.commit()
 
-    history_str = combine_message_thread(
-        messages=msg_history,
-        max_tokens=max_history_tokens,
-        llm_tokenizer=llm_tokenizer,
-    )
-
-    rephrased_query = req.query_override or thread_based_query_rephrase(
-        user_query=query,
-        history_str=history_str,
-    )
-
     if req.retrieval_options is None and req.search_doc_ids is None:
         retrieval_options: RetrievalDetails | None = RetrievalDetails(
             run_search=OptionalSearchSetting.ALWAYS,
@@ -216,7 +200,7 @@ def handle_send_message_simple_with_history(
         retrieval_options=retrieval_options,
         # Simple API does not support reranking, hide complexity from user
         rerank_settings=None,
-        query_override=rephrased_query,
+        query_override=None,
         chunks_above=0,
         chunks_below=0,
         full_doc=req.full_doc,

backend/ee/onyx/server/query_and_chat/models.py

@@ -8,10 +8,29 @@ from pydantic import model_validator
 
 from onyx.chat.models import ThreadMessage
 from onyx.configs.constants import DocumentSource
+from onyx.context.search.models import BaseFilters
+from onyx.context.search.models import BasicChunkRequest
 from onyx.context.search.models import ChunkContext
+from onyx.context.search.models import InferenceChunk
 from onyx.context.search.models import RetrievalDetails
 from onyx.server.manage.models import StandardAnswer
-from onyx.server.query_and_chat.streaming_models import SubQuestionIdentifier
+
+
+class StandardAnswerRequest(BaseModel):
+    message: str
+    slack_bot_categories: list[str]
+
+
+class StandardAnswerResponse(BaseModel):
+    standard_answers: list[StandardAnswer] = Field(default_factory=list)
+
+
+class DocumentSearchRequest(BasicChunkRequest):
+    user_selected_filters: BaseFilters | None = None
+
+
+class DocumentSearchResponse(BaseModel):
+    top_documents: list[InferenceChunk]
 
 
 class BasicCreateChatMessageRequest(ChunkContext):
@@ -71,17 +90,17 @@ class SimpleDoc(BaseModel):
     metadata: dict | None
 
 
-class AgentSubQuestion(SubQuestionIdentifier):
+class AgentSubQuestion(BaseModel):
     sub_question: str
     document_ids: list[str]
 
 
-class AgentAnswer(SubQuestionIdentifier):
+class AgentAnswer(BaseModel):
     answer: str
     answer_type: Literal["agent_sub_answer", "agent_level_answer"]
 
 
-class AgentSubQuery(SubQuestionIdentifier):
+class AgentSubQuery(BaseModel):
     sub_query: str
     query_id: int
 
@@ -127,12 +146,3 @@ class AgentSubQuery(SubQuestionIdentifier):
             sorted(level_question_dict.items(), key=lambda x: (x is None, x))
         )
         return sorted_dict
-
-
-class StandardAnswerRequest(BaseModel):
-    message: str
-    slack_bot_categories: list[str]
-
-
-class StandardAnswerResponse(BaseModel):
-    standard_answers: list[StandardAnswer] = Field(default_factory=list)

backend/ee/onyx/server/query_history/api.py

@@ -24,7 +24,7 @@ from onyx.auth.users import current_admin_user
 from onyx.auth.users import get_display_email
 from onyx.background.celery.versioned_apps.client import app as client_app
 from onyx.background.task_utils import construct_query_history_report_name
-from onyx.chat.chat_utils import create_chat_chain
+from onyx.chat.chat_utils import create_chat_history_chain
 from onyx.configs.app_configs import ONYX_QUERY_HISTORY_TYPE
 from onyx.configs.constants import FileOrigin
 from onyx.configs.constants import FileType
@@ -123,10 +123,9 @@ def snapshot_from_chat_session(
 ) -> ChatSessionSnapshot | None:
     try:
         # Older chats may not have the right structure
-        last_message, messages = create_chat_chain(
+        messages = create_chat_history_chain(
             chat_session_id=chat_session.id, db_session=db_session
         )
-        messages.append(last_message)
     except RuntimeError:
         return None
 

backend/ee/onyx/server/tenants/provisioning.py

@@ -38,10 +38,8 @@ from onyx.db.models import IndexModelStatus
 from onyx.db.models import SearchSettings
 from onyx.db.models import UserTenantMapping
 from onyx.llm.llm_provider_options import ANTHROPIC_PROVIDER_NAME
-from onyx.llm.llm_provider_options import ANTHROPIC_VISIBLE_MODEL_NAMES
 from onyx.llm.llm_provider_options import get_anthropic_model_names
-from onyx.llm.llm_provider_options import OPEN_AI_MODEL_NAMES
-from onyx.llm.llm_provider_options import OPEN_AI_VISIBLE_MODEL_NAMES
+from onyx.llm.llm_provider_options import get_openai_model_names
 from onyx.llm.llm_provider_options import OPENAI_PROVIDER_NAME
 from onyx.server.manage.embedding.models import CloudEmbeddingProviderCreationRequest
 from onyx.server.manage.llm.models import LLMProviderUpsertRequest
@@ -275,7 +273,7 @@ def configure_default_api_keys(db_session: Session) -> None:
             model_configurations=[
                 ModelConfigurationUpsertRequest(
                     name=name,
-                    is_visible=name in ANTHROPIC_VISIBLE_MODEL_NAMES,
+                    is_visible=False,
                     max_input_tokens=None,
                 )
                 for name in get_anthropic_model_names()
@@ -302,10 +300,10 @@ def configure_default_api_keys(db_session: Session) -> None:
             model_configurations=[
                 ModelConfigurationUpsertRequest(
                     name=model_name,
-                    is_visible=model_name in OPEN_AI_VISIBLE_MODEL_NAMES,
+                    is_visible=False,
                     max_input_tokens=None,
                 )
-                for model_name in OPEN_AI_MODEL_NAMES
+                for model_name in get_openai_model_names()
             ],
             api_key_changed=True,
         )

backend/onyx/agents/agent_framework/message_format.py

@@ -1,73 +0,0 @@
-import json
-from collections.abc import Sequence
-from typing import cast
-
-from langchain_core.messages import AIMessage
-from langchain_core.messages import BaseMessage
-from langchain_core.messages import FunctionMessage
-
-from onyx.llm.message_types import AssistantMessage
-from onyx.llm.message_types import ChatCompletionMessage
-from onyx.llm.message_types import FunctionCall
-from onyx.llm.message_types import SystemMessage
-from onyx.llm.message_types import ToolCall
-from onyx.llm.message_types import ToolMessage
-from onyx.llm.message_types import UserMessageWithText
-
-
-HUMAN = "human"
-SYSTEM = "system"
-AI = "ai"
-FUNCTION = "function"
-
-
-def base_messages_to_chat_completion_msgs(
-    msgs: Sequence[BaseMessage],
-) -> list[ChatCompletionMessage]:
-    return [_base_message_to_chat_completion_msg(msg) for msg in msgs]
-
-
-def _base_message_to_chat_completion_msg(
-    msg: BaseMessage,
-) -> ChatCompletionMessage:
-    if msg.type == HUMAN:
-        content = msg.content if isinstance(msg.content, str) else str(msg.content)
-        user_msg: UserMessageWithText = {"role": "user", "content": content}
-        return user_msg
-    if msg.type == SYSTEM:
-        content = msg.content if isinstance(msg.content, str) else str(msg.content)
-        system_msg: SystemMessage = {"role": "system", "content": content}
-        return system_msg
-    if msg.type == AI:
-        content = msg.content if isinstance(msg.content, str) else str(msg.content)
-        assistant_msg: AssistantMessage = {
-            "role": "assistant",
-            "content": content,
-        }
-        if isinstance(msg, AIMessage) and msg.tool_calls:
-            assistant_msg["tool_calls"] = [
-                ToolCall(
-                    id=tool_call.get("id") or "",
-                    type="function",
-                    function=FunctionCall(
-                        name=tool_call["name"],
-                        arguments=json.dumps(tool_call["args"]),
-                    ),
-                )
-                for tool_call in msg.tool_calls
-            ]
-        return assistant_msg
-    if msg.type == FUNCTION:
-        function_message = cast(FunctionMessage, msg)
-        content = (
-            function_message.content
-            if isinstance(function_message.content, str)
-            else str(function_message.content)
-        )
-        tool_msg: ToolMessage = {
-            "role": "tool",
-            "content": content,
-            "tool_call_id": function_message.name or "",
-        }
-        return tool_msg
-    raise ValueError(f"Unexpected message type: {msg.type}")

backend/onyx/agents/agent_framework/models.py

@@ -1,47 +0,0 @@
-from typing import Any
-from typing import Literal
-from typing import TypeAlias
-
-from pydantic import BaseModel
-
-from onyx.llm.model_response import ModelResponseStream
-
-
-class ToolCallStreamItem(BaseModel):
-    call_id: str | None = None
-
-    id: str | None = None
-
-    name: str | None = None
-
-    arguments: str | None = None
-
-    type: Literal["function_call"] = "function_call"
-
-    index: int | None = None
-
-
-class ToolCallOutputStreamItem(BaseModel):
-    call_id: str | None = None
-
-    output: Any
-
-    type: Literal["function_call_output"] = "function_call_output"
-
-
-RunItemStreamEventDetails: TypeAlias = ToolCallStreamItem | ToolCallOutputStreamItem
-
-
-class RunItemStreamEvent(BaseModel):
-    type: Literal[
-        "message_start",
-        "message_done",
-        "reasoning_start",
-        "reasoning_done",
-        "tool_call",
-        "tool_call_output",
-    ]
-    details: RunItemStreamEventDetails | None = None
-
-
-StreamEvent: TypeAlias = ModelResponseStream | RunItemStreamEvent

backend/onyx/agents/agent_framework/query.py

@@ -1,365 +0,0 @@
-import json
-from collections.abc import Callable
-from collections.abc import Iterator
-from collections.abc import Sequence
-from dataclasses import dataclass
-from typing import Any
-
-import onyx.tracing.framework._error_tracing as _error_tracing
-from onyx.agents.agent_framework.models import RunItemStreamEvent
-from onyx.agents.agent_framework.models import StreamEvent
-from onyx.agents.agent_framework.models import ToolCallOutputStreamItem
-from onyx.agents.agent_framework.models import ToolCallStreamItem
-from onyx.llm.interfaces import LanguageModelInput
-from onyx.llm.interfaces import LLM
-from onyx.llm.interfaces import ToolChoiceOptions
-from onyx.llm.message_types import ChatCompletionMessage
-from onyx.llm.message_types import ToolCall
-from onyx.llm.model_response import ModelResponseStream
-from onyx.tools.tool import RunContextWrapper
-from onyx.tools.tool import Tool
-from onyx.tracing.framework.create import agent_span
-from onyx.tracing.framework.create import function_span
-from onyx.tracing.framework.create import generation_span
-from onyx.tracing.framework.spans import SpanError
-
-
-@dataclass
-class QueryResult:
-    stream: Iterator[StreamEvent]
-    new_messages_stateful: list[ChatCompletionMessage]
-
-
-def _serialize_tool_output(output: Any) -> str:
-    if isinstance(output, str):
-        return output
-    try:
-        return json.dumps(output)
-    except TypeError:
-        return str(output)
-
-
-def _parse_tool_calls_from_message_content(
-    content: str,
-) -> list[dict[str, Any]]:
-    """Parse JSON content that represents tool call instructions."""
-    try:
-        parsed_content = json.loads(content)
-    except json.JSONDecodeError:
-        return []
-
-    if isinstance(parsed_content, dict):
-        candidates = [parsed_content]
-    elif isinstance(parsed_content, list):
-        candidates = [item for item in parsed_content if isinstance(item, dict)]
-    else:
-        return []
-
-    tool_calls: list[dict[str, Any]] = []
-
-    for candidate in candidates:
-        name = candidate.get("name")
-        arguments = candidate.get("arguments")
-
-        if not isinstance(name, str) or arguments is None:
-            continue
-
-        if not isinstance(arguments, dict):
-            continue
-
-        call_id = candidate.get("id")
-        arguments_str = json.dumps(arguments)
-        tool_calls.append(
-            {
-                "id": call_id,
-                "name": name,
-                "arguments": arguments_str,
-            }
-        )
-
-    return tool_calls
-
-
-def _try_convert_content_to_tool_calls_for_non_tool_calling_llms(
-    tool_calls_in_progress: dict[int, dict[str, Any]],
-    content_parts: list[str],
-    structured_response_format: dict | None,
-    next_synthetic_tool_call_id: Callable[[], str],
-) -> None:
-    """Populate tool_calls_in_progress when a non-tool-calling LLM returns JSON content describing tool calls."""
-    if tool_calls_in_progress or not content_parts or structured_response_format:
-        return
-
-    tool_calls_from_content = _parse_tool_calls_from_message_content(
-        "".join(content_parts)
-    )
-
-    if not tool_calls_from_content:
-        return
-
-    content_parts.clear()
-
-    for index, tool_call_data in enumerate(tool_calls_from_content):
-        call_id = tool_call_data["id"] or next_synthetic_tool_call_id()
-        tool_calls_in_progress[index] = {
-            "id": call_id,
-            "name": tool_call_data["name"],
-            "arguments": tool_call_data["arguments"],
-        }
-
-
-def _update_tool_call_with_delta(
-    tool_calls_in_progress: dict[int, dict[str, Any]],
-    tool_call_delta: Any,
-) -> None:
-    index = tool_call_delta.index
-
-    if index not in tool_calls_in_progress:
-        tool_calls_in_progress[index] = {
-            "id": None,
-            "name": None,
-            "arguments": "",
-        }
-
-    if tool_call_delta.id:
-        tool_calls_in_progress[index]["id"] = tool_call_delta.id
-
-    if tool_call_delta.function:
-        if tool_call_delta.function.name:
-            tool_calls_in_progress[index]["name"] = tool_call_delta.function.name
-
-        if tool_call_delta.function.arguments:
-            tool_calls_in_progress[index][
-                "arguments"
-            ] += tool_call_delta.function.arguments
-
-
-def query(
-    llm_with_default_settings: LLM,
-    messages: LanguageModelInput,
-    tools: Sequence[Tool],
-    context: Any,
-    tool_choice: ToolChoiceOptions | None = None,
-    structured_response_format: dict | None = None,
-) -> QueryResult:
-    tool_definitions = [tool.tool_definition() for tool in tools]
-    tools_by_name = {tool.name: tool for tool in tools}
-
-    new_messages_stateful: list[ChatCompletionMessage] = []
-
-    current_span = agent_span(
-        name="agent_framework_query",
-        output_type="dict" if structured_response_format else "str",
-    )
-    current_span.start(mark_as_current=True)
-    current_span.span_data.tools = [t.name for t in tools]
-
-    def stream_generator() -> Iterator[StreamEvent]:
-        message_started = False
-        reasoning_started = False
-
-        tool_calls_in_progress: dict[int, dict[str, Any]] = {}
-
-        content_parts: list[str] = []
-
-        synthetic_tool_call_counter = 0
-
-        def _next_synthetic_tool_call_id() -> str:
-            nonlocal synthetic_tool_call_counter
-            call_id = f"synthetic_tool_call_{synthetic_tool_call_counter}"
-            synthetic_tool_call_counter += 1
-            return call_id
-
-        with generation_span(  # type: ignore[misc]
-            model=llm_with_default_settings.config.model_name,
-            model_config={
-                "base_url": str(llm_with_default_settings.config.api_base or ""),
-                "model_impl": "litellm",
-            },
-        ) as span_generation:
-            # Only set input if messages is a sequence (not a string)
-            # ChatCompletionMessage TypedDicts are compatible with Mapping[str, Any] at runtime
-            if isinstance(messages, Sequence) and not isinstance(messages, str):
-                # Convert ChatCompletionMessage sequence to Sequence[Mapping[str, Any]]
-                span_generation.span_data.input = [dict(msg) for msg in messages]  # type: ignore[assignment]
-            for chunk in llm_with_default_settings.stream(
-                prompt=messages,
-                tools=tool_definitions,
-                tool_choice=tool_choice,
-                structured_response_format=structured_response_format,
-            ):
-                assert isinstance(chunk, ModelResponseStream)
-                usage = getattr(chunk, "usage", None)
-                if usage:
-                    span_generation.span_data.usage = {
-                        "input_tokens": usage.prompt_tokens,
-                        "output_tokens": usage.completion_tokens,
-                        "cache_read_input_tokens": usage.cache_read_input_tokens,
-                        "cache_creation_input_tokens": usage.cache_creation_input_tokens,
-                    }
-
-                delta = chunk.choice.delta
-                finish_reason = chunk.choice.finish_reason
-
-                if delta.reasoning_content:
-                    if not reasoning_started:
-                        yield RunItemStreamEvent(type="reasoning_start")
-                        reasoning_started = True
-
-                if delta.content:
-                    if reasoning_started:
-                        yield RunItemStreamEvent(type="reasoning_done")
-                        reasoning_started = False
-                    content_parts.append(delta.content)
-                    if not message_started:
-                        yield RunItemStreamEvent(type="message_start")
-                        message_started = True
-
-                if delta.tool_calls:
-                    if reasoning_started:
-                        yield RunItemStreamEvent(type="reasoning_done")
-                        reasoning_started = False
-                    if message_started:
-                        yield RunItemStreamEvent(type="message_done")
-                        message_started = False
-
-                    for tool_call_delta in delta.tool_calls:
-                        _update_tool_call_with_delta(
-                            tool_calls_in_progress, tool_call_delta
-                        )
-
-                yield chunk
-
-                if not finish_reason:
-                    continue
-
-                if reasoning_started:
-                    yield RunItemStreamEvent(type="reasoning_done")
-                    reasoning_started = False
-                if message_started:
-                    yield RunItemStreamEvent(type="message_done")
-                    message_started = False
-
-                if tool_choice != "none":
-                    _try_convert_content_to_tool_calls_for_non_tool_calling_llms(
-                        tool_calls_in_progress,
-                        content_parts,
-                        structured_response_format,
-                        _next_synthetic_tool_call_id,
-                    )
-
-                if content_parts:
-                    new_messages_stateful.append(
-                        {
-                            "role": "assistant",
-                            "content": "".join(content_parts),
-                        }
-                    )
-            span_generation.span_data.output = new_messages_stateful
-
-        # Execute tool calls outside of the stream loop and generation_span
-        if tool_calls_in_progress:
-            sorted_tool_calls = sorted(tool_calls_in_progress.items())
-
-            # Build tool calls for the message and execute tools
-            assistant_tool_calls: list[ToolCall] = []
-            tool_outputs: dict[str, str] = {}
-
-            for _, tool_call_data in sorted_tool_calls:
-                call_id = tool_call_data["id"]
-                name = tool_call_data["name"]
-                arguments_str = tool_call_data["arguments"]
-
-                if call_id is None or name is None:
-                    continue
-
-                assistant_tool_calls.append(
-                    {
-                        "id": call_id,
-                        "type": "function",
-                        "function": {
-                            "name": name,
-                            "arguments": arguments_str,
-                        },
-                    }
-                )
-
-                yield RunItemStreamEvent(
-                    type="tool_call",
-                    details=ToolCallStreamItem(
-                        call_id=call_id,
-                        name=name,
-                        arguments=arguments_str,
-                    ),
-                )
-
-                if name in tools_by_name:
-                    tool = tools_by_name[name]
-                    arguments = json.loads(arguments_str)
-
-                    run_context = RunContextWrapper(context=context)
-
-                    # TODO: Instead of executing sequentially, execute in parallel
-                    # In practice, it's not a must right now since we don't use parallel
-                    # tool calls, so kicking the can down the road for now.
-                    with function_span(tool.name) as span_fn:
-                        span_fn.span_data.input = arguments
-                        try:
-                            output = tool.run_v2(run_context, **arguments)
-                            tool_outputs[call_id] = _serialize_tool_output(output)
-                            span_fn.span_data.output = output
-                        except Exception as e:
-                            _error_tracing.attach_error_to_current_span(
-                                SpanError(
-                                    message="Error running tool",
-                                    data={"tool_name": tool.name, "error": str(e)},
-                                )
-                            )
-                            # Treat the error as the tool output so the framework can continue
-                            error_output = f"Error: {str(e)}"
-                            tool_outputs[call_id] = error_output
-                            output = error_output
-
-                    yield RunItemStreamEvent(
-                        type="tool_call_output",
-                        details=ToolCallOutputStreamItem(
-                            call_id=call_id,
-                            output=output,
-                        ),
-                    )
-                else:
-                    not_found_output = f"Tool {name} not found"
-                    tool_outputs[call_id] = _serialize_tool_output(not_found_output)
-                    yield RunItemStreamEvent(
-                        type="tool_call_output",
-                        details=ToolCallOutputStreamItem(
-                            call_id=call_id,
-                            output=not_found_output,
-                        ),
-                    )
-
-            new_messages_stateful.append(
-                {
-                    "role": "assistant",
-                    "content": None,
-                    "tool_calls": assistant_tool_calls,
-                }
-            )
-
-            for _, tool_call_data in sorted_tool_calls:
-                call_id = tool_call_data["id"]
-
-                if call_id in tool_outputs:
-                    new_messages_stateful.append(
-                        {
-                            "role": "tool",
-                            "content": tool_outputs[call_id],
-                            "tool_call_id": call_id,
-                        }
-                    )
-        current_span.finish(reset_current=True)
-
-    return QueryResult(
-        stream=stream_generator(),
-        new_messages_stateful=new_messages_stateful,
-    )

backend/onyx/agents/agent_sdk/message_format.py

@@ -1,167 +0,0 @@
-from collections.abc import Sequence
-
-from langchain.schema.messages import BaseMessage
-
-from onyx.agents.agent_sdk.message_types import AgentSDKMessage
-from onyx.agents.agent_sdk.message_types import AssistantMessageWithContent
-from onyx.agents.agent_sdk.message_types import ImageContent
-from onyx.agents.agent_sdk.message_types import InputTextContent
-from onyx.agents.agent_sdk.message_types import SystemMessage
-from onyx.agents.agent_sdk.message_types import UserMessage
-
-
-# TODO: Currently, we only support native API input for images. For other
-# files, we process the content and share it as text in the message. In
-# the future, we might support native file uploads for other types of files.
-def base_messages_to_agent_sdk_msgs(
-    msgs: Sequence[BaseMessage],
-    is_responses_api: bool,
-) -> list[AgentSDKMessage]:
-    return [_base_message_to_agent_sdk_msg(msg, is_responses_api) for msg in msgs]
-
-
-def _base_message_to_agent_sdk_msg(
-    msg: BaseMessage, is_responses_api: bool
-) -> AgentSDKMessage:
-    message_type_to_agent_sdk_role = {
-        "human": "user",
-        "system": "system",
-        "ai": "assistant",
-    }
-    role = message_type_to_agent_sdk_role[msg.type]
-
-    # Convert content to Agent SDK format
-    content = msg.content
-
-    if isinstance(content, str):
-        # For system/user/assistant messages, use InputTextContent
-        if role in ("system", "user"):
-            input_text_content: list[InputTextContent | ImageContent] = [
-                InputTextContent(type="input_text", text=content)
-            ]
-            if role == "system":
-                # SystemMessage only accepts InputTextContent
-                system_msg: SystemMessage = {
-                    "role": "system",
-                    "content": [InputTextContent(type="input_text", text=content)],
-                }
-                return system_msg
-            else:  # user
-                user_msg: UserMessage = {
-                    "role": "user",
-                    "content": input_text_content,
-                }
-                return user_msg
-        else:  # assistant
-            assistant_msg: AssistantMessageWithContent
-            if is_responses_api:
-                from onyx.agents.agent_sdk.message_types import OutputTextContent
-
-                assistant_msg = {
-                    "role": "assistant",
-                    "content": [OutputTextContent(type="output_text", text=content)],
-                }
-            else:
-                assistant_msg = {
-                    "role": "assistant",
-                    "content": [InputTextContent(type="input_text", text=content)],
-                }
-            return assistant_msg
-    elif isinstance(content, list):
-        # For lists, we need to process based on the role
-        if role == "assistant":
-            # For responses API, use OutputTextContent; otherwise use InputTextContent
-            assistant_content: list[InputTextContent | OutputTextContent] = []
-
-            if is_responses_api:
-                from onyx.agents.agent_sdk.message_types import OutputTextContent
-
-                for item in content:
-                    if isinstance(item, str):
-                        assistant_content.append(
-                            OutputTextContent(type="output_text", text=item)
-                        )
-                    elif isinstance(item, dict) and item.get("type") == "text":
-                        assistant_content.append(
-                            OutputTextContent(
-                                type="output_text", text=item.get("text", "")
-                            )
-                        )
-                    else:
-                        raise ValueError(
-                            f"Unexpected item type for assistant message: {type(item)}. Item: {item}"
-                        )
-            else:
-                for item in content:
-                    if isinstance(item, str):
-                        assistant_content.append(
-                            InputTextContent(type="input_text", text=item)
-                        )
-                    elif isinstance(item, dict) and item.get("type") == "text":
-                        assistant_content.append(
-                            InputTextContent(
-                                type="input_text", text=item.get("text", "")
-                            )
-                        )
-                    else:
-                        raise ValueError(
-                            f"Unexpected item type for assistant message: {type(item)}. Item: {item}"
-                        )
-
-            assistant_msg_list: AssistantMessageWithContent = {
-                "role": "assistant",
-                "content": assistant_content,
-            }
-            return assistant_msg_list
-        else:  # system or user - use InputTextContent
-            input_content: list[InputTextContent | ImageContent] = []
-            for item in content:
-                if isinstance(item, str):
-                    input_content.append(InputTextContent(type="input_text", text=item))
-                elif isinstance(item, dict):
-                    item_type = item.get("type")
-                    if item_type == "text":
-                        input_content.append(
-                            InputTextContent(
-                                type="input_text", text=item.get("text", "")
-                            )
-                        )
-                    elif item_type == "image_url":
-                        # Convert image_url to input_image format
-                        image_url = item.get("image_url", {})
-                        if isinstance(image_url, dict):
-                            url = image_url.get("url", "")
-                        else:
-                            url = image_url
-                        input_content.append(
-                            ImageContent(
-                                type="input_image", image_url=url, detail="auto"
-                            )
-                        )
-                    else:
-                        raise ValueError(f"Unexpected item type: {item_type}")
-                else:
-                    raise ValueError(
-                        f"Unexpected item type: {type(item)}. Item: {item}"
-                    )
-
-            if role == "system":
-                # SystemMessage only accepts InputTextContent (no images)
-                text_only_content = [
-                    c for c in input_content if c["type"] == "input_text"
-                ]
-                system_msg_list: SystemMessage = {
-                    "role": "system",
-                    "content": text_only_content,  # type: ignore[typeddict-item]
-                }
-                return system_msg_list
-            else:  # user
-                user_msg_list: UserMessage = {
-                    "role": "user",
-                    "content": input_content,
-                }
-                return user_msg_list
-    else:
-        raise ValueError(
-            f"Unexpected content type: {type(content)}. Content: {content}"
-        )

backend/onyx/agents/agent_sdk/message_types.py

@@ -1,125 +0,0 @@
-"""Strongly typed message structures for Agent SDK messages."""
-
-from typing import Literal
-from typing import NotRequired
-
-from typing_extensions import TypedDict
-
-
-class InputTextContent(TypedDict):
-    type: Literal["input_text"]
-    text: str
-
-
-class OutputTextContent(TypedDict):
-    type: Literal["output_text"]
-    text: str
-
-
-TextContent = InputTextContent | OutputTextContent
-
-
-class ImageContent(TypedDict):
-    type: Literal["input_image"]
-    image_url: str
-    detail: str
-
-
-# Tool call structures
-class ToolCallFunction(TypedDict):
-    name: str
-    arguments: str
-
-
-class ToolCall(TypedDict):
-    id: str
-    type: Literal["function"]
-    function: ToolCallFunction
-
-
-# Message types
-class SystemMessage(TypedDict):
-    role: Literal["system"]
-    content: list[InputTextContent]  # System messages use input text
-
-
-class UserMessage(TypedDict):
-    role: Literal["user"]
-    content: list[
-        InputTextContent | ImageContent
-    ]  # User messages use input text or images
-
-
-class AssistantMessageWithContent(TypedDict):
-    role: Literal["assistant"]
-    content: list[
-        InputTextContent | OutputTextContent
-    ]  # Assistant messages use output_text for responses API compatibility
-
-
-class AssistantMessageWithToolCalls(TypedDict):
-    role: Literal["assistant"]
-    tool_calls: list[ToolCall]
-
-
-class AssistantMessageDuringAgentRun(TypedDict):
-    role: Literal["assistant"]
-    id: str
-    content: (
-        list[InputTextContent | OutputTextContent] | list[ToolCall]
-    )  # Assistant runtime messages receive output_text from agents SDK for responses API compatibility
-    status: Literal["completed", "failed", "in_progress"]
-    type: Literal["message"]
-
-
-class ToolMessage(TypedDict):
-    role: Literal["tool"]
-    content: str
-    tool_call_id: str
-
-
-class FunctionCallMessage(TypedDict):
-    """Agent SDK function call message format."""
-
-    type: Literal["function_call"]
-    id: NotRequired[str]
-    call_id: str
-    name: str
-    arguments: str
-
-
-class FunctionCallOutputMessage(TypedDict):
-    """Agent SDK function call output message format."""
-
-    type: Literal["function_call_output"]
-    call_id: str
-    output: str
-
-
-class SummaryText(TypedDict):
-    """Summary text item in reasoning messages."""
-
-    text: str
-    type: Literal["summary_text"]
-
-
-class ReasoningMessage(TypedDict):
-    """Agent SDK reasoning message format."""
-
-    id: str
-    type: Literal["reasoning"]
-    summary: list[SummaryText]
-
-
-# Union type for all Agent SDK messages
-AgentSDKMessage = (
-    SystemMessage
-    | UserMessage
-    | AssistantMessageWithContent
-    | AssistantMessageWithToolCalls
-    | AssistantMessageDuringAgentRun
-    | ToolMessage
-    | FunctionCallMessage
-    | FunctionCallOutputMessage
-    | ReasoningMessage
-)

backend/onyx/agents/agent_sdk/monkey_patches.py

@@ -1,36 +0,0 @@
-from typing import Any
-
-from agents.models.openai_responses import Converter as OpenAIResponsesConverter
-
-
-# TODO: I am very sad that I have to monkey patch this :(
-# Basically, OpenAI agents sdk doesn't convert the tool choice correctly
-# when they have a built-in tool in their framework, like they do for web_search
-# and image_generation.
-# Going to open up a thread with OpenAI agents team to see what they recommend
-# or what we can fix.
-# A discussion is warranted, but we likely want to just write our own LitellmModel for
-# the OpenAI agents SDK since they probably don't really care about Litellm and will
-# prioritize functionality for their own models.
-def monkey_patch_convert_tool_choice_to_ignore_openai_hosted_web_search() -> None:
-    if (
-        getattr(OpenAIResponsesConverter.convert_tool_choice, "__name__", "")
-        == "_patched_convert_tool_choice"
-    ):
-        return
-
-    orig_func = OpenAIResponsesConverter.convert_tool_choice.__func__  # type: ignore[attr-defined]
-
-    def _patched_convert_tool_choice(cls: type, tool_choice: Any) -> Any:
-        # Handle OpenAI hosted tools that we have custom implementations for
-        # Without this patch, the library uses special formatting that breaks our custom tools
-        # See: https://platform.openai.com/docs/api-reference/responses/create#responses_create-tool_choice-hosted_tool-type
-        if tool_choice == "web_search":
-            return {"type": "function", "name": "web_search"}
-        if tool_choice == "image_generation":
-            return {"type": "function", "name": "image_generation"}
-        return orig_func(cls, tool_choice)
-
-    OpenAIResponsesConverter.convert_tool_choice = classmethod(  # type: ignore[method-assign, assignment]
-        _patched_convert_tool_choice
-    )

backend/onyx/agents/agent_sdk/sync_agent_stream_adapter.py

@@ -1,178 +0,0 @@
-import asyncio
-import queue
-import threading
-from collections.abc import Iterator
-from collections.abc import Sequence
-from typing import Generic
-from typing import Optional
-from typing import TypeVar
-
-from agents import Agent
-from agents import RunResultStreaming
-from agents import TContext
-from agents.run import Runner
-
-from onyx.agents.agent_sdk.message_types import AgentSDKMessage
-from onyx.utils.threadpool_concurrency import run_in_background
-
-T = TypeVar("T")
-
-
-class SyncAgentStream(Generic[T]):
-    """
-    Convert an async streamed run into a sync iterator with cooperative cancellation.
-    Runs the Agent in a background thread.
-
-    Usage:
-        adapter = SyncStreamAdapter(
-            agent=agent,
-            input=input,
-            context=context,
-            max_turns=100,
-            queue_maxsize=0,         # optional backpressure
-        )
-        for ev in adapter:          # sync iteration
-            ...
-        # or cancel from elsewhere:
-        adapter.cancel()
-    """
-
-    _SENTINEL = object()
-
-    def __init__(
-        self,
-        *,
-        agent: Agent,
-        input: Sequence[AgentSDKMessage],
-        context: TContext | None = None,
-        max_turns: int = 100,
-        queue_maxsize: int = 0,
-    ) -> None:
-        self._agent = agent
-        self._input = input
-        self._context = context
-        self._max_turns = max_turns
-
-        self._q: "queue.Queue[object]" = queue.Queue(maxsize=queue_maxsize)
-        self._loop: Optional[asyncio.AbstractEventLoop] = None
-        self._thread: Optional[threading.Thread] = None
-        self.streamed: RunResultStreaming | None = None
-        self._exc: Optional[BaseException] = None
-        self._cancel_requested = threading.Event()
-        self._started = threading.Event()
-        self._done = threading.Event()
-
-        self._start_thread()
-
-    # ---------- public sync API ----------
-
-    def __iter__(self) -> Iterator[T]:
-        try:
-            while True:
-                item = self._q.get()
-                if item is self._SENTINEL:
-                    # If the consumer thread raised, surface it now
-                    if self._exc is not None:
-                        raise self._exc
-                    # Normal completion
-                    return
-                yield item  # type: ignore[misc,return-value]
-        finally:
-            # Ensure we fully clean up whether we exited due to exception,
-            # StopIteration, or external cancel.
-            self.close()
-
-    def cancel(self) -> bool:
-        """
-        Cooperatively cancel the underlying streamed run and shut down.
-        Safe to call multiple times and from any thread.
-        """
-        self._cancel_requested.set()
-        loop = self._loop
-        streamed = self.streamed
-        if loop is not None and streamed is not None and not self._done.is_set():
-            loop.call_soon_threadsafe(streamed.cancel)
-            return True
-        return False
-
-    def close(self, *, wait: bool = True) -> None:
-        """Idempotent shutdown."""
-        self.cancel()
-        # ask the loop to stop if it's still running
-        loop = self._loop
-        if loop is not None and loop.is_running():
-            try:
-                loop.call_soon_threadsafe(loop.stop)
-            except Exception:
-                pass
-        # join the thread
-        if wait and self._thread is not None and self._thread.is_alive():
-            self._thread.join(timeout=5.0)
-
-    # ---------- internals ----------
-
-    def _start_thread(self) -> None:
-        t = run_in_background(self._thread_main)
-        self._thread = t
-        # Optionally wait until the loop/worker is started so .cancel() is safe soon after init
-        self._started.wait(timeout=1.0)
-
-    def _thread_main(self) -> None:
-        loop = asyncio.new_event_loop()
-        self._loop = loop
-        asyncio.set_event_loop(loop)
-
-        async def worker() -> None:
-            try:
-                # Start the streamed run inside the loop thread
-                self.streamed = Runner.run_streamed(
-                    self._agent,
-                    self._input,  # type: ignore[arg-type]
-                    context=self._context,
-                    max_turns=self._max_turns,
-                )
-
-                # If cancel was requested before we created _streamed, honor it now
-                if self._cancel_requested.is_set():
-                    await self.streamed.cancel()  # type: ignore[func-returns-value]
-
-                # Consume async events and forward into the thread-safe queue
-                async for ev in self.streamed.stream_events():
-                    # Early exit if a late cancel arrives
-                    if self._cancel_requested.is_set():
-                        # Try to cancel gracefully; don't break until cancel takes effect
-                        try:
-                            await self.streamed.cancel()  # type: ignore[func-returns-value]
-                        except Exception:
-                            pass
-                        break
-                    # This put() may block if queue_maxsize > 0 (backpressure)
-                    self._q.put(ev)
-
-            except BaseException as e:
-                # Save exception to surface on the sync iterator side
-                self._exc = e
-            finally:
-                # Signal end-of-stream
-                self._q.put(self._SENTINEL)
-                self._done.set()
-
-        # Mark started and run the worker to completion
-        self._started.set()
-        try:
-            loop.run_until_complete(worker())
-        finally:
-            try:
-                # Drain pending tasks/callbacks safely
-                pending = asyncio.all_tasks(loop=loop)
-                for task in pending:
-                    task.cancel()
-                if pending:
-                    loop.run_until_complete(
-                        asyncio.gather(*pending, return_exceptions=True)
-                    )
-            except Exception:
-                pass
-            finally:
-                loop.close()
-                self._loop = None

backend/onyx/agents/agent_search/core_state.py

@@ -1,21 +0,0 @@
-from operator import add
-from typing import Annotated
-
-from pydantic import BaseModel
-
-
-class CoreState(BaseModel):
-    """
-    This is the core state that is shared across all subgraphs.
-    """
-
-    log_messages: Annotated[list[str], add] = []
-    current_step_nr: int = 1
-
-
-class SubgraphCoreState(BaseModel):
-    """
-    This is the core state that is shared across all subgraphs.
-    """
-
-    log_messages: Annotated[list[str], add] = []

backend/onyx/agents/agent_search/dc_search_analysis/edges.py

@@ -1,62 +0,0 @@
-from collections.abc import Hashable
-from typing import cast
-
-from langchain_core.runnables.config import RunnableConfig
-from langgraph.types import Send
-
-from onyx.agents.agent_search.dc_search_analysis.states import ObjectInformationInput
-from onyx.agents.agent_search.dc_search_analysis.states import (
-    ObjectResearchInformationUpdate,
-)
-from onyx.agents.agent_search.dc_search_analysis.states import ObjectSourceInput
-from onyx.agents.agent_search.dc_search_analysis.states import (
-    SearchSourcesObjectsUpdate,
-)
-from onyx.agents.agent_search.models import GraphConfig
-
-
-def parallel_object_source_research_edge(
-    state: SearchSourcesObjectsUpdate, config: RunnableConfig
-) -> list[Send | Hashable]:
-    """
-    LangGraph edge to parallelize the research for an individual object and source
-    """
-
-    search_objects = state.analysis_objects
-    search_sources = state.analysis_sources
-
-    object_source_combinations = [
-        (object, source) for object in search_objects for source in search_sources
-    ]
-
-    return [
-        Send(
-            "research_object_source",
-            ObjectSourceInput(
-                object_source_combination=object_source_combination,
-                log_messages=[],
-            ),
-        )
-        for object_source_combination in object_source_combinations
-    ]
-
-
-def parallel_object_research_consolidation_edge(
-    state: ObjectResearchInformationUpdate, config: RunnableConfig
-) -> list[Send | Hashable]:
-    """
-    LangGraph edge to parallelize the research for an individual object and source
-    """
-    cast(GraphConfig, config["metadata"]["config"])
-    object_research_information_results = state.object_research_information_results
-
-    return [
-        Send(
-            "consolidate_object_research",
-            ObjectInformationInput(
-                object_information=object_information,
-                log_messages=[],
-            ),
-        )
-        for object_information in object_research_information_results
-    ]

backend/onyx/agents/agent_search/dc_search_analysis/graph_builder.py

@@ -1,103 +0,0 @@
-from langgraph.graph import END
-from langgraph.graph import START
-from langgraph.graph import StateGraph
-
-from onyx.agents.agent_search.dc_search_analysis.edges import (
-    parallel_object_research_consolidation_edge,
-)
-from onyx.agents.agent_search.dc_search_analysis.edges import (
-    parallel_object_source_research_edge,
-)
-from onyx.agents.agent_search.dc_search_analysis.nodes.a1_search_objects import (
-    search_objects,
-)
-from onyx.agents.agent_search.dc_search_analysis.nodes.a2_research_object_source import (
-    research_object_source,
-)
-from onyx.agents.agent_search.dc_search_analysis.nodes.a3_structure_research_by_object import (
-    structure_research_by_object,
-)
-from onyx.agents.agent_search.dc_search_analysis.nodes.a4_consolidate_object_research import (
-    consolidate_object_research,
-)
-from onyx.agents.agent_search.dc_search_analysis.nodes.a5_consolidate_research import (
-    consolidate_research,
-)
-from onyx.agents.agent_search.dc_search_analysis.states import MainInput
-from onyx.agents.agent_search.dc_search_analysis.states import MainState
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-test_mode = False
-
-
-def divide_and_conquer_graph_builder(test_mode: bool = False) -> StateGraph:
-    """
-    LangGraph graph builder for the knowledge graph  search process.
-    """
-
-    graph = StateGraph(
-        state_schema=MainState,
-        input=MainInput,
-    )
-
-    ### Add nodes ###
-
-    graph.add_node(
-        "search_objects",
-        search_objects,
-    )
-
-    graph.add_node(
-        "structure_research_by_source",
-        structure_research_by_object,
-    )
-
-    graph.add_node(
-        "research_object_source",
-        research_object_source,
-    )
-
-    graph.add_node(
-        "consolidate_object_research",
-        consolidate_object_research,
-    )
-
-    graph.add_node(
-        "consolidate_research",
-        consolidate_research,
-    )
-
-    ### Add edges ###
-
-    graph.add_edge(start_key=START, end_key="search_objects")
-
-    graph.add_conditional_edges(
-        source="search_objects",
-        path=parallel_object_source_research_edge,
-        path_map=["research_object_source"],
-    )
-
-    graph.add_edge(
-        start_key="research_object_source",
-        end_key="structure_research_by_source",
-    )
-
-    graph.add_conditional_edges(
-        source="structure_research_by_source",
-        path=parallel_object_research_consolidation_edge,
-        path_map=["consolidate_object_research"],
-    )
-
-    graph.add_edge(
-        start_key="consolidate_object_research",
-        end_key="consolidate_research",
-    )
-
-    graph.add_edge(
-        start_key="consolidate_research",
-        end_key=END,
-    )
-
-    return graph

backend/onyx/agents/agent_search/dc_search_analysis/nodes/a1_search_objects.py

@@ -1,146 +0,0 @@
-from typing import cast
-
-from langchain_core.messages import HumanMessage
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dc_search_analysis.ops import extract_section
-from onyx.agents.agent_search.dc_search_analysis.ops import research
-from onyx.agents.agent_search.dc_search_analysis.states import MainState
-from onyx.agents.agent_search.dc_search_analysis.states import (
-    SearchSourcesObjectsUpdate,
-)
-from onyx.agents.agent_search.models import GraphConfig
-from onyx.agents.agent_search.shared_graph_utils.agent_prompt_ops import (
-    trim_prompt_piece,
-)
-from onyx.prompts.agents.dc_prompts import DC_OBJECT_NO_BASE_DATA_EXTRACTION_PROMPT
-from onyx.prompts.agents.dc_prompts import DC_OBJECT_SEPARATOR
-from onyx.prompts.agents.dc_prompts import DC_OBJECT_WITH_BASE_DATA_EXTRACTION_PROMPT
-from onyx.secondary_llm_flows.source_filter import strings_to_document_sources
-from onyx.utils.logger import setup_logger
-from onyx.utils.threadpool_concurrency import run_with_timeout
-
-logger = setup_logger()
-
-
-def search_objects(
-    state: MainState, config: RunnableConfig, writer: StreamWriter = lambda _: None
-) -> SearchSourcesObjectsUpdate:
-    """
-    LangGraph node to start the agentic search process.
-    """
-
-    graph_config = cast(GraphConfig, config["metadata"]["config"])
-    question = graph_config.inputs.prompt_builder.raw_user_query
-    search_tool = graph_config.tooling.search_tool
-
-    if search_tool is None or graph_config.inputs.persona is None:
-        raise ValueError("Search tool and persona must be provided for DivCon search")
-
-    try:
-        instructions = graph_config.inputs.persona.system_prompt or ""
-
-        agent_1_instructions = extract_section(
-            instructions, "Agent Step 1:", "Agent Step 2:"
-        )
-        if agent_1_instructions is None:
-            raise ValueError("Agent 1 instructions not found")
-
-        agent_1_base_data = extract_section(instructions, "|Start Data|", "|End Data|")
-
-        agent_1_task = extract_section(
-            agent_1_instructions, "Task:", "Independent Research Sources:"
-        )
-        if agent_1_task is None:
-            raise ValueError("Agent 1 task not found")
-
-        agent_1_independent_sources_str = extract_section(
-            agent_1_instructions, "Independent Research Sources:", "Output Objective:"
-        )
-        if agent_1_independent_sources_str is None:
-            raise ValueError("Agent 1 Independent Research Sources not found")
-
-        document_sources = strings_to_document_sources(
-            [
-                x.strip().lower()
-                for x in agent_1_independent_sources_str.split(DC_OBJECT_SEPARATOR)
-            ]
-        )
-
-        agent_1_output_objective = extract_section(
-            agent_1_instructions, "Output Objective:"
-        )
-        if agent_1_output_objective is None:
-            raise ValueError("Agent 1 output objective not found")
-
-    except Exception as e:
-        raise ValueError(
-            f"Agent 1 instructions not found or not formatted correctly: {e}"
-        )
-
-    # Extract objects
-
-    if agent_1_base_data is None:
-        # Retrieve chunks for objects
-
-        retrieved_docs = research(question, search_tool)[:10]
-
-        document_texts_list = []
-        for doc_num, doc in enumerate(retrieved_docs):
-            chunk_text = "Document " + str(doc_num) + ":\n" + doc.content
-            document_texts_list.append(chunk_text)
-
-        document_texts = "\n\n".join(document_texts_list)
-
-        dc_object_extraction_prompt = DC_OBJECT_NO_BASE_DATA_EXTRACTION_PROMPT.format(
-            question=question,
-            task=agent_1_task,
-            document_text=document_texts,
-            objects_of_interest=agent_1_output_objective,
-        )
-    else:
-        dc_object_extraction_prompt = DC_OBJECT_WITH_BASE_DATA_EXTRACTION_PROMPT.format(
-            question=question,
-            task=agent_1_task,
-            base_data=agent_1_base_data,
-            objects_of_interest=agent_1_output_objective,
-        )
-
-    msg = [
-        HumanMessage(
-            content=trim_prompt_piece(
-                config=graph_config.tooling.primary_llm.config,
-                prompt_piece=dc_object_extraction_prompt,
-                reserved_str="",
-            ),
-        )
-    ]
-    primary_llm = graph_config.tooling.primary_llm
-    # Grader
-    try:
-        llm_response = run_with_timeout(
-            30,
-            primary_llm.invoke_langchain,
-            prompt=msg,
-            timeout_override=30,
-            max_tokens=300,
-        )
-
-        cleaned_response = (
-            str(llm_response.content)
-            .replace("```json\n", "")
-            .replace("\n```", "")
-            .replace("\n", "")
-        )
-        cleaned_response = cleaned_response.split("OBJECTS:")[1]
-        object_list = [x.strip() for x in cleaned_response.split(";")]
-
-    except Exception as e:
-        raise ValueError(f"Error in search_objects: {e}")
-
-    return SearchSourcesObjectsUpdate(
-        analysis_objects=object_list,
-        analysis_sources=document_sources,
-        log_messages=["Agent 1 Task done"],
-    )

backend/onyx/agents/agent_search/dc_search_analysis/nodes/a2_research_object_source.py

@@ -1,180 +0,0 @@
-from datetime import datetime
-from datetime import timedelta
-from datetime import timezone
-from typing import cast
-
-from langchain_core.messages import HumanMessage
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dc_search_analysis.ops import extract_section
-from onyx.agents.agent_search.dc_search_analysis.ops import research
-from onyx.agents.agent_search.dc_search_analysis.states import ObjectSourceInput
-from onyx.agents.agent_search.dc_search_analysis.states import (
-    ObjectSourceResearchUpdate,
-)
-from onyx.agents.agent_search.models import GraphConfig
-from onyx.agents.agent_search.shared_graph_utils.agent_prompt_ops import (
-    trim_prompt_piece,
-)
-from onyx.prompts.agents.dc_prompts import DC_OBJECT_SOURCE_RESEARCH_PROMPT
-from onyx.utils.logger import setup_logger
-from onyx.utils.threadpool_concurrency import run_with_timeout
-
-logger = setup_logger()
-
-
-def research_object_source(
-    state: ObjectSourceInput,
-    config: RunnableConfig,
-    writer: StreamWriter = lambda _: None,
-) -> ObjectSourceResearchUpdate:
-    """
-    LangGraph node to start the agentic search process.
-    """
-    datetime.now()
-
-    graph_config = cast(GraphConfig, config["metadata"]["config"])
-    search_tool = graph_config.tooling.search_tool
-    question = graph_config.inputs.prompt_builder.raw_user_query
-    object, document_source = state.object_source_combination
-
-    if search_tool is None or graph_config.inputs.persona is None:
-        raise ValueError("Search tool and persona must be provided for DivCon search")
-
-    try:
-        instructions = graph_config.inputs.persona.system_prompt or ""
-
-        agent_2_instructions = extract_section(
-            instructions, "Agent Step 2:", "Agent Step 3:"
-        )
-        if agent_2_instructions is None:
-            raise ValueError("Agent 2 instructions not found")
-
-        agent_2_task = extract_section(
-            agent_2_instructions, "Task:", "Independent Research Sources:"
-        )
-        if agent_2_task is None:
-            raise ValueError("Agent 2 task not found")
-
-        agent_2_time_cutoff = extract_section(
-            agent_2_instructions, "Time Cutoff:", "Research Topics:"
-        )
-
-        agent_2_research_topics = extract_section(
-            agent_2_instructions, "Research Topics:", "Output Objective"
-        )
-
-        agent_2_output_objective = extract_section(
-            agent_2_instructions, "Output Objective:"
-        )
-        if agent_2_output_objective is None:
-            raise ValueError("Agent 2 output objective not found")
-
-    except Exception:
-        raise ValueError(
-            "Agent 1 instructions not found or not formatted correctly: {e}"
-        )
-
-    # Populate prompt
-
-    # Retrieve chunks for objects
-
-    if agent_2_time_cutoff is not None and agent_2_time_cutoff.strip() != "":
-        if agent_2_time_cutoff.strip().endswith("d"):
-            try:
-                days = int(agent_2_time_cutoff.strip()[:-1])
-                agent_2_source_start_time = datetime.now(timezone.utc) - timedelta(
-                    days=days
-                )
-            except ValueError:
-                raise ValueError(
-                    f"Invalid time cutoff format: {agent_2_time_cutoff}. Expected format: '<number>d'"
-                )
-        else:
-            raise ValueError(
-                f"Invalid time cutoff format: {agent_2_time_cutoff}. Expected format: '<number>d'"
-            )
-    else:
-        agent_2_source_start_time = None
-
-    document_sources = [document_source] if document_source else None
-
-    if len(question.strip()) > 0:
-        research_area = f"{question} for {object}"
-    elif agent_2_research_topics and len(agent_2_research_topics.strip()) > 0:
-        research_area = f"{agent_2_research_topics} for {object}"
-    else:
-        research_area = object
-
-    retrieved_docs = research(
-        question=research_area,
-        search_tool=search_tool,
-        document_sources=document_sources,
-        time_cutoff=agent_2_source_start_time,
-    )
-
-    # Generate document text
-
-    document_texts_list = []
-    for doc_num, doc in enumerate(retrieved_docs):
-        chunk_text = "Document " + str(doc_num) + ":\n" + doc.content
-        document_texts_list.append(chunk_text)
-
-    document_texts = "\n\n".join(document_texts_list)
-
-    # Built prompt
-
-    today = datetime.now().strftime("%A, %Y-%m-%d")
-
-    dc_object_source_research_prompt = (
-        DC_OBJECT_SOURCE_RESEARCH_PROMPT.format(
-            today=today,
-            question=question,
-            task=agent_2_task,
-            document_text=document_texts,
-            format=agent_2_output_objective,
-        )
-        .replace("---object---", object)
-        .replace("---source---", document_source.value)
-    )
-
-    # Run LLM
-
-    msg = [
-        HumanMessage(
-            content=trim_prompt_piece(
-                config=graph_config.tooling.primary_llm.config,
-                prompt_piece=dc_object_source_research_prompt,
-                reserved_str="",
-            ),
-        )
-    ]
-    primary_llm = graph_config.tooling.primary_llm
-    # Grader
-    try:
-        llm_response = run_with_timeout(
-            30,
-            primary_llm.invoke_langchain,
-            prompt=msg,
-            timeout_override=30,
-            max_tokens=300,
-        )
-
-        cleaned_response = str(llm_response.content).replace("```json\n", "")
-        cleaned_response = cleaned_response.split("RESEARCH RESULTS:")[1]
-        object_research_results = {
-            "object": object,
-            "source": document_source.value,
-            "research_result": cleaned_response,
-        }
-
-    except Exception as e:
-        raise ValueError(f"Error in research_object_source: {e}")
-
-    logger.debug("DivCon Step A2 - Object Source Research - completed for an object")
-
-    return ObjectSourceResearchUpdate(
-        object_source_research_results=[object_research_results],
-        log_messages=["Agent Step 2 done for one object"],
-    )

backend/onyx/agents/agent_search/dc_search_analysis/nodes/a3_structure_research_by_object.py

@@ -1,48 +0,0 @@
-from collections import defaultdict
-from typing import Dict
-from typing import List
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dc_search_analysis.states import MainState
-from onyx.agents.agent_search.dc_search_analysis.states import (
-    ObjectResearchInformationUpdate,
-)
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-def structure_research_by_object(
-    state: MainState, config: RunnableConfig, writer: StreamWriter = lambda _: None
-) -> ObjectResearchInformationUpdate:
-    """
-    LangGraph node to start the agentic search process.
-    """
-
-    object_source_research_results = state.object_source_research_results
-
-    object_research_information_results: List[Dict[str, str]] = []
-    object_research_information_results_list: Dict[str, List[str]] = defaultdict(list)
-
-    for object_source_research in object_source_research_results:
-        object = object_source_research["object"]
-        source = object_source_research["source"]
-        research_result = object_source_research["research_result"]
-
-        object_research_information_results_list[object].append(
-            f"Source: {source}\n{research_result}"
-        )
-
-    for object, information in object_research_information_results_list.items():
-        object_research_information_results.append(
-            {"object": object, "information": "\n".join(information)}
-        )
-
-    logger.debug("DivCon Step A3 - Object Research Information Structuring - completed")
-
-    return ObjectResearchInformationUpdate(
-        object_research_information_results=object_research_information_results,
-        log_messages=["A3 - Object Research Information structured"],
-    )

backend/onyx/agents/agent_search/dc_search_analysis/nodes/a4_consolidate_object_research.py

@@ -1,103 +0,0 @@
-from typing import cast
-
-from langchain_core.messages import HumanMessage
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dc_search_analysis.ops import extract_section
-from onyx.agents.agent_search.dc_search_analysis.states import ObjectInformationInput
-from onyx.agents.agent_search.dc_search_analysis.states import ObjectResearchUpdate
-from onyx.agents.agent_search.models import GraphConfig
-from onyx.agents.agent_search.shared_graph_utils.agent_prompt_ops import (
-    trim_prompt_piece,
-)
-from onyx.prompts.agents.dc_prompts import DC_OBJECT_CONSOLIDATION_PROMPT
-from onyx.utils.logger import setup_logger
-from onyx.utils.threadpool_concurrency import run_with_timeout
-
-logger = setup_logger()
-
-
-def consolidate_object_research(
-    state: ObjectInformationInput,
-    config: RunnableConfig,
-    writer: StreamWriter = lambda _: None,
-) -> ObjectResearchUpdate:
-    """
-    LangGraph node to start the agentic search process.
-    """
-    graph_config = cast(GraphConfig, config["metadata"]["config"])
-    search_tool = graph_config.tooling.search_tool
-    question = graph_config.inputs.prompt_builder.raw_user_query
-
-    if search_tool is None or graph_config.inputs.persona is None:
-        raise ValueError("Search tool and persona must be provided for DivCon search")
-
-    instructions = graph_config.inputs.persona.system_prompt or ""
-
-    agent_4_instructions = extract_section(
-        instructions, "Agent Step 4:", "Agent Step 5:"
-    )
-    if agent_4_instructions is None:
-        raise ValueError("Agent 4 instructions not found")
-    agent_4_output_objective = extract_section(
-        agent_4_instructions, "Output Objective:"
-    )
-    if agent_4_output_objective is None:
-        raise ValueError("Agent 4 output objective not found")
-
-    object_information = state.object_information
-
-    object = object_information["object"]
-    information = object_information["information"]
-
-    # Create a prompt for the object consolidation
-
-    dc_object_consolidation_prompt = DC_OBJECT_CONSOLIDATION_PROMPT.format(
-        question=question,
-        object=object,
-        information=information,
-        format=agent_4_output_objective,
-    )
-
-    # Run LLM
-
-    msg = [
-        HumanMessage(
-            content=trim_prompt_piece(
-                config=graph_config.tooling.primary_llm.config,
-                prompt_piece=dc_object_consolidation_prompt,
-                reserved_str="",
-            ),
-        )
-    ]
-    primary_llm = graph_config.tooling.primary_llm
-    # Grader
-    try:
-        llm_response = run_with_timeout(
-            30,
-            primary_llm.invoke_langchain,
-            prompt=msg,
-            timeout_override=30,
-            max_tokens=300,
-        )
-
-        cleaned_response = str(llm_response.content).replace("```json\n", "")
-        consolidated_information = cleaned_response.split("INFORMATION:")[1]
-
-    except Exception as e:
-        raise ValueError(f"Error in consolidate_object_research: {e}")
-
-    object_research_results = {
-        "object": object,
-        "research_result": consolidated_information,
-    }
-
-    logger.debug(
-        "DivCon Step A4 - Object Research Consolidation - completed for an object"
-    )
-
-    return ObjectResearchUpdate(
-        object_research_results=[object_research_results],
-        log_messages=["Agent Source Consilidation done"],
-    )

backend/onyx/agents/agent_search/dc_search_analysis/nodes/a5_consolidate_research.py

@@ -1,127 +0,0 @@
-from typing import cast
-
-from langchain_core.messages import HumanMessage
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dc_search_analysis.ops import extract_section
-from onyx.agents.agent_search.dc_search_analysis.states import MainState
-from onyx.agents.agent_search.dc_search_analysis.states import ResearchUpdate
-from onyx.agents.agent_search.models import GraphConfig
-from onyx.agents.agent_search.shared_graph_utils.agent_prompt_ops import (
-    trim_prompt_piece,
-)
-from onyx.agents.agent_search.shared_graph_utils.llm import stream_llm_answer
-from onyx.prompts.agents.dc_prompts import DC_FORMATTING_NO_BASE_DATA_PROMPT
-from onyx.prompts.agents.dc_prompts import DC_FORMATTING_WITH_BASE_DATA_PROMPT
-from onyx.utils.logger import setup_logger
-from onyx.utils.threadpool_concurrency import run_with_timeout
-
-logger = setup_logger()
-
-
-def consolidate_research(
-    state: MainState, config: RunnableConfig, writer: StreamWriter = lambda _: None
-) -> ResearchUpdate:
-    """
-    LangGraph node to start the agentic search process.
-    """
-
-    graph_config = cast(GraphConfig, config["metadata"]["config"])
-
-    search_tool = graph_config.tooling.search_tool
-
-    if search_tool is None or graph_config.inputs.persona is None:
-        raise ValueError("Search tool and persona must be provided for DivCon search")
-
-    # Populate prompt
-    instructions = graph_config.inputs.persona.system_prompt or ""
-
-    try:
-        agent_5_instructions = extract_section(
-            instructions, "Agent Step 5:", "Agent End"
-        )
-        if agent_5_instructions is None:
-            raise ValueError("Agent 5 instructions not found")
-        agent_5_base_data = extract_section(instructions, "|Start Data|", "|End Data|")
-        agent_5_task = extract_section(
-            agent_5_instructions, "Task:", "Independent Research Sources:"
-        )
-        if agent_5_task is None:
-            raise ValueError("Agent 5 task not found")
-        agent_5_output_objective = extract_section(
-            agent_5_instructions, "Output Objective:"
-        )
-        if agent_5_output_objective is None:
-            raise ValueError("Agent 5 output objective not found")
-    except ValueError as e:
-        raise ValueError(
-            f"Instructions for Agent Step 5 were not properly formatted: {e}"
-        )
-
-    research_result_list = []
-
-    if agent_5_task.strip() == "*concatenate*":
-        object_research_results = state.object_research_results
-
-        for object_research_result in object_research_results:
-            object = object_research_result["object"]
-            research_result = object_research_result["research_result"]
-            research_result_list.append(f"Object: {object}\n\n{research_result}")
-
-        research_results = "\n\n".join(research_result_list)
-
-    else:
-        raise NotImplementedError("Only '*concatenate*' is currently supported")
-
-    # Create a prompt for the object consolidation
-
-    if agent_5_base_data is None:
-        dc_formatting_prompt = DC_FORMATTING_NO_BASE_DATA_PROMPT.format(
-            text=research_results,
-            format=agent_5_output_objective,
-        )
-    else:
-        dc_formatting_prompt = DC_FORMATTING_WITH_BASE_DATA_PROMPT.format(
-            base_data=agent_5_base_data,
-            text=research_results,
-            format=agent_5_output_objective,
-        )
-
-    # Run LLM
-
-    msg = [
-        HumanMessage(
-            content=trim_prompt_piece(
-                config=graph_config.tooling.primary_llm.config,
-                prompt_piece=dc_formatting_prompt,
-                reserved_str="",
-            ),
-        )
-    ]
-
-    try:
-        _ = run_with_timeout(
-            60,
-            lambda: stream_llm_answer(
-                llm=graph_config.tooling.primary_llm,
-                prompt=msg,
-                event_name="initial_agent_answer",
-                writer=writer,
-                agent_answer_level=0,
-                agent_answer_question_num=0,
-                agent_answer_type="agent_level_answer",
-                timeout_override=30,
-                max_tokens=None,
-            ),
-        )
-
-    except Exception as e:
-        raise ValueError(f"Error in consolidate_research: {e}")
-
-    logger.debug("DivCon Step A5 - Final Generation - completed")
-
-    return ResearchUpdate(
-        research_results=research_results,
-        log_messages=["Agent Source Consilidation done"],
-    )

backend/onyx/agents/agent_search/dc_search_analysis/ops.py

@@ -1,61 +0,0 @@
-from datetime import datetime
-from typing import cast
-
-from onyx.chat.models import LlmDoc
-from onyx.configs.constants import DocumentSource
-from onyx.context.search.models import InferenceSection
-from onyx.db.engine.sql_engine import get_session_with_current_tenant
-from onyx.tools.models import SearchToolOverrideKwargs
-from onyx.tools.tool_implementations.search.search_tool import (
-    FINAL_CONTEXT_DOCUMENTS_ID,
-)
-from onyx.tools.tool_implementations.search.search_tool import SearchTool
-
-
-def research(
-    question: str,
-    search_tool: SearchTool,
-    document_sources: list[DocumentSource] | None = None,
-    time_cutoff: datetime | None = None,
-) -> list[LlmDoc]:
-    # new db session to avoid concurrency issues
-
-    callback_container: list[list[InferenceSection]] = []
-    retrieved_docs: list[LlmDoc] = []
-
-    with get_session_with_current_tenant() as db_session:
-        for tool_response in search_tool.run(
-            query=question,
-            override_kwargs=SearchToolOverrideKwargs(
-                force_no_rerank=False,
-                alternate_db_session=db_session,
-                retrieved_sections_callback=callback_container.append,
-                skip_query_analysis=True,
-                document_sources=document_sources,
-                time_cutoff=time_cutoff,
-            ),
-        ):
-            # get retrieved docs to send to the rest of the graph
-            if tool_response.id == FINAL_CONTEXT_DOCUMENTS_ID:
-                retrieved_docs = cast(list[LlmDoc], tool_response.response)[:10]
-                break
-    return retrieved_docs
-
-
-def extract_section(
-    text: str, start_marker: str, end_marker: str | None = None
-) -> str | None:
-    """Extract text between markers, returning None if markers not found"""
-    parts = text.split(start_marker)
-
-    if len(parts) == 1:
-        return None
-
-    after_start = parts[1].strip()
-
-    if not end_marker:
-        return after_start
-
-    extract = after_start.split(end_marker)[0]
-
-    return extract.strip()

backend/onyx/agents/agent_search/dc_search_analysis/states.py

@@ -1,72 +0,0 @@
-from operator import add
-from typing import Annotated
-from typing import Dict
-from typing import TypedDict
-
-from pydantic import BaseModel
-
-from onyx.agents.agent_search.core_state import CoreState
-from onyx.agents.agent_search.orchestration.states import ToolCallUpdate
-from onyx.agents.agent_search.orchestration.states import ToolChoiceInput
-from onyx.agents.agent_search.orchestration.states import ToolChoiceUpdate
-from onyx.configs.constants import DocumentSource
-
-
-### States ###
-class LoggerUpdate(BaseModel):
-    log_messages: Annotated[list[str], add] = []
-
-
-class SearchSourcesObjectsUpdate(LoggerUpdate):
-    analysis_objects: list[str] = []
-    analysis_sources: list[DocumentSource] = []
-
-
-class ObjectSourceInput(LoggerUpdate):
-    object_source_combination: tuple[str, DocumentSource]
-
-
-class ObjectSourceResearchUpdate(LoggerUpdate):
-    object_source_research_results: Annotated[list[Dict[str, str]], add] = []
-
-
-class ObjectInformationInput(LoggerUpdate):
-    object_information: Dict[str, str]
-
-
-class ObjectResearchInformationUpdate(LoggerUpdate):
-    object_research_information_results: Annotated[list[Dict[str, str]], add] = []
-
-
-class ObjectResearchUpdate(LoggerUpdate):
-    object_research_results: Annotated[list[Dict[str, str]], add] = []
-
-
-class ResearchUpdate(LoggerUpdate):
-    research_results: str | None = None
-
-
-## Graph Input State
-class MainInput(CoreState):
-    pass
-
-
-## Graph State
-class MainState(
-    # This includes the core state
-    MainInput,
-    ToolChoiceInput,
-    ToolCallUpdate,
-    ToolChoiceUpdate,
-    SearchSourcesObjectsUpdate,
-    ObjectSourceResearchUpdate,
-    ObjectResearchInformationUpdate,
-    ObjectResearchUpdate,
-    ResearchUpdate,
-):
-    pass
-
-
-## Graph Output State - presently not used
-class MainOutput(TypedDict):
-    log_messages: list[str]

backend/onyx/agents/agent_search/deep_search/main/models.py

@@ -1,36 +0,0 @@
-from pydantic import BaseModel
-
-
-class RefinementSubQuestion(BaseModel):
-    sub_question: str
-    sub_question_id: str
-    verified: bool
-    answered: bool
-    answer: str
-
-
-class AgentTimings(BaseModel):
-    base_duration_s: float | None
-    refined_duration_s: float | None
-    full_duration_s: float | None
-
-
-class AgentBaseMetrics(BaseModel):
-    num_verified_documents_total: int | None
-    num_verified_documents_core: int | None
-    verified_avg_score_core: float | None
-    num_verified_documents_base: int | float | None
-    verified_avg_score_base: float | None = None
-    base_doc_boost_factor: float | None = None
-    support_boost_factor: float | None = None
-    duration_s: float | None = None
-
-
-class AgentRefinedMetrics(BaseModel):
-    refined_doc_boost_factor: float | None = None
-    refined_question_boost_factor: float | None = None
-    duration_s: float | None = None
-
-
-class AgentAdditionalMetrics(BaseModel):
-    pass

backend/onyx/agents/agent_search/dr/conditional_edges.py

@@ -1,61 +0,0 @@
-from collections.abc import Hashable
-
-from langgraph.graph import END
-from langgraph.types import Send
-
-from onyx.agents.agent_search.dr.enums import DRPath
-from onyx.agents.agent_search.dr.states import MainState
-
-
-def decision_router(state: MainState) -> list[Send | Hashable] | DRPath | str:
-    if not state.tools_used:
-        raise IndexError("state.tools_used cannot be empty")
-
-    # next_tool is either a generic tool name or a DRPath string
-    next_tool_name = state.tools_used[-1]
-
-    available_tools = state.available_tools
-    if not available_tools:
-        raise ValueError("No tool is available. This should not happen.")
-
-    if next_tool_name in available_tools:
-        next_tool_path = available_tools[next_tool_name].path
-    elif next_tool_name == DRPath.END.value:
-        return END
-    elif next_tool_name == DRPath.LOGGER.value:
-        return DRPath.LOGGER
-    elif next_tool_name == DRPath.CLOSER.value:
-        return DRPath.CLOSER
-    else:
-        return DRPath.ORCHESTRATOR
-
-    # handle invalid paths
-    if next_tool_path == DRPath.CLARIFIER:
-        raise ValueError("CLARIFIER is not a valid path during iteration")
-
-    # handle tool calls without a query
-    if (
-        next_tool_path
-        in (
-            DRPath.INTERNAL_SEARCH,
-            DRPath.WEB_SEARCH,
-            DRPath.KNOWLEDGE_GRAPH,
-            DRPath.IMAGE_GENERATION,
-        )
-        and len(state.query_list) == 0
-    ):
-        return DRPath.CLOSER
-
-    return next_tool_path
-
-
-def completeness_router(state: MainState) -> DRPath | str:
-    if not state.tools_used:
-        raise IndexError("tools_used cannot be empty")
-
-    # go to closer if path is CLOSER or no queries
-    next_path = state.tools_used[-1]
-
-    if next_path == DRPath.ORCHESTRATOR.value:
-        return DRPath.ORCHESTRATOR
-    return DRPath.LOGGER

backend/onyx/agents/agent_search/dr/constants.py

@@ -1,31 +0,0 @@
-from onyx.agents.agent_search.dr.enums import DRPath
-from onyx.agents.agent_search.dr.enums import ResearchType
-
-MAX_CHAT_HISTORY_MESSAGES = (
-    3  # note: actual count is x2 to account for user and assistant messages
-)
-
-MAX_DR_PARALLEL_SEARCH = 4
-
-# TODO: test more, generally not needed/adds unnecessary iterations
-MAX_NUM_CLOSER_SUGGESTIONS = (
-    0  # how many times the closer can send back to the orchestrator
-)
-
-CLARIFICATION_REQUEST_PREFIX = "PLEASE CLARIFY:"
-HIGH_LEVEL_PLAN_PREFIX = "The Plan:"
-
-AVERAGE_TOOL_COSTS: dict[DRPath, float] = {
-    DRPath.INTERNAL_SEARCH: 1.0,
-    DRPath.KNOWLEDGE_GRAPH: 2.0,
-    DRPath.WEB_SEARCH: 1.5,
-    DRPath.IMAGE_GENERATION: 3.0,
-    DRPath.GENERIC_TOOL: 1.5,  # TODO: see todo in OrchestratorTool
-    DRPath.CLOSER: 0.0,
-}
-
-DR_TIME_BUDGET_BY_TYPE = {
-    ResearchType.THOUGHTFUL: 3.0,
-    ResearchType.DEEP: 12.0,
-    ResearchType.FAST: 0.5,
-}

backend/onyx/agents/agent_search/dr/dr_prompt_builder.py

@@ -1,112 +0,0 @@
-from datetime import datetime
-
-from onyx.agents.agent_search.dr.enums import DRPath
-from onyx.agents.agent_search.dr.enums import ResearchType
-from onyx.agents.agent_search.dr.models import DRPromptPurpose
-from onyx.agents.agent_search.dr.models import OrchestratorTool
-from onyx.prompts.dr_prompts import GET_CLARIFICATION_PROMPT
-from onyx.prompts.dr_prompts import KG_TYPES_DESCRIPTIONS
-from onyx.prompts.dr_prompts import ORCHESTRATOR_DEEP_INITIAL_PLAN_PROMPT
-from onyx.prompts.dr_prompts import ORCHESTRATOR_DEEP_ITERATIVE_DECISION_PROMPT
-from onyx.prompts.dr_prompts import ORCHESTRATOR_FAST_ITERATIVE_DECISION_PROMPT
-from onyx.prompts.dr_prompts import ORCHESTRATOR_FAST_ITERATIVE_REASONING_PROMPT
-from onyx.prompts.dr_prompts import ORCHESTRATOR_NEXT_STEP_PURPOSE_PROMPT
-from onyx.prompts.dr_prompts import TOOL_DIFFERENTIATION_HINTS
-from onyx.prompts.dr_prompts import TOOL_QUESTION_HINTS
-from onyx.prompts.prompt_template import PromptTemplate
-
-
-def get_dr_prompt_orchestration_templates(
-    purpose: DRPromptPurpose,
-    research_type: ResearchType,
-    available_tools: dict[str, OrchestratorTool],
-    entity_types_string: str | None = None,
-    relationship_types_string: str | None = None,
-    reasoning_result: str | None = None,
-    tool_calls_string: str | None = None,
-) -> PromptTemplate:
-    available_tools = available_tools or {}
-    tool_names = list(available_tools.keys())
-    tool_description_str = "\n\n".join(
-        f"- {tool_name}: {tool.description}"
-        for tool_name, tool in available_tools.items()
-    )
-    tool_cost_str = "\n".join(
-        f"{tool_name}: {tool.cost}" for tool_name, tool in available_tools.items()
-    )
-
-    tool_differentiations: list[str] = [
-        TOOL_DIFFERENTIATION_HINTS[(tool_1, tool_2)]
-        for tool_1 in available_tools
-        for tool_2 in available_tools
-        if (tool_1, tool_2) in TOOL_DIFFERENTIATION_HINTS
-    ]
-    tool_differentiation_hint_string = (
-        "\n".join(tool_differentiations) or "(No differentiating hints available)"
-    )
-    # TODO: add tool deliniation pairs for custom tools as well
-
-    tool_question_hint_string = (
-        "\n".join(
-            "- " + TOOL_QUESTION_HINTS[tool]
-            for tool in available_tools
-            if tool in TOOL_QUESTION_HINTS
-        )
-        or "(No examples available)"
-    )
-
-    if DRPath.KNOWLEDGE_GRAPH.value in available_tools and (
-        entity_types_string or relationship_types_string
-    ):
-
-        kg_types_descriptions = KG_TYPES_DESCRIPTIONS.build(
-            possible_entities=entity_types_string or "",
-            possible_relationships=relationship_types_string or "",
-        )
-    else:
-        kg_types_descriptions = "(The Knowledge Graph is not used.)"
-
-    if purpose == DRPromptPurpose.PLAN:
-        if research_type == ResearchType.THOUGHTFUL:
-            raise ValueError("plan generation is not supported for FAST time budget")
-        base_template = ORCHESTRATOR_DEEP_INITIAL_PLAN_PROMPT
-
-    elif purpose == DRPromptPurpose.NEXT_STEP_REASONING:
-        if research_type == ResearchType.THOUGHTFUL:
-            base_template = ORCHESTRATOR_FAST_ITERATIVE_REASONING_PROMPT
-        else:
-            raise ValueError(
-                "reasoning is not separately required for DEEP time budget"
-            )
-
-    elif purpose == DRPromptPurpose.NEXT_STEP_PURPOSE:
-        base_template = ORCHESTRATOR_NEXT_STEP_PURPOSE_PROMPT
-
-    elif purpose == DRPromptPurpose.NEXT_STEP:
-        if research_type == ResearchType.THOUGHTFUL:
-            base_template = ORCHESTRATOR_FAST_ITERATIVE_DECISION_PROMPT
-        else:
-            base_template = ORCHESTRATOR_DEEP_ITERATIVE_DECISION_PROMPT
-
-    elif purpose == DRPromptPurpose.CLARIFICATION:
-        if research_type == ResearchType.THOUGHTFUL:
-            raise ValueError("clarification is not supported for FAST time budget")
-        base_template = GET_CLARIFICATION_PROMPT
-
-    else:
-        # for mypy, clearly a mypy bug
-        raise ValueError(f"Invalid purpose: {purpose}")
-
-    return base_template.partial_build(
-        num_available_tools=str(len(tool_names)),
-        available_tools=", ".join(tool_names),
-        tool_choice_options=" or ".join(tool_names),
-        current_time=datetime.now().strftime("%Y-%m-%d %H:%M:%S"),
-        kg_types_descriptions=kg_types_descriptions,
-        tool_descriptions=tool_description_str,
-        tool_differentiation_hints=tool_differentiation_hint_string,
-        tool_question_hints=tool_question_hint_string,
-        average_tool_costs=tool_cost_str,
-        reasoning_result=reasoning_result or "(No reasoning result provided.)",
-        tool_calls_string=tool_calls_string or "(No tool calls provided.)",
-    )

backend/onyx/agents/agent_search/dr/enums.py

@@ -1,32 +0,0 @@
-from enum import Enum
-
-
-class ResearchType(str, Enum):
-    """Research type options for agent search operations"""
-
-    # BASIC = "BASIC"
-    LEGACY_AGENTIC = "LEGACY_AGENTIC"  # only used for legacy agentic search migrations
-    THOUGHTFUL = "THOUGHTFUL"
-    DEEP = "DEEP"
-    FAST = "FAST"
-
-
-class ResearchAnswerPurpose(str, Enum):
-    """Research answer purpose options for agent search operations"""
-
-    ANSWER = "ANSWER"
-    CLARIFICATION_REQUEST = "CLARIFICATION_REQUEST"
-
-
-class DRPath(str, Enum):
-    CLARIFIER = "Clarifier"
-    ORCHESTRATOR = "Orchestrator"
-    INTERNAL_SEARCH = "Internal Search"
-    GENERIC_TOOL = "Generic Tool"
-    KNOWLEDGE_GRAPH = "Knowledge Graph Search"
-    WEB_SEARCH = "Web Search"
-    IMAGE_GENERATION = "Image Generation"
-    GENERIC_INTERNAL_TOOL = "Generic Internal Tool"
-    CLOSER = "Closer"
-    LOGGER = "Logger"
-    END = "End"

backend/onyx/agents/agent_search/dr/graph_builder.py

@@ -1,88 +0,0 @@
-from langgraph.graph import END
-from langgraph.graph import START
-from langgraph.graph import StateGraph
-
-from onyx.agents.agent_search.dr.conditional_edges import completeness_router
-from onyx.agents.agent_search.dr.conditional_edges import decision_router
-from onyx.agents.agent_search.dr.enums import DRPath
-from onyx.agents.agent_search.dr.nodes.dr_a0_clarification import clarifier
-from onyx.agents.agent_search.dr.nodes.dr_a1_orchestrator import orchestrator
-from onyx.agents.agent_search.dr.nodes.dr_a2_closer import closer
-from onyx.agents.agent_search.dr.nodes.dr_a3_logger import logging
-from onyx.agents.agent_search.dr.states import MainInput
-from onyx.agents.agent_search.dr.states import MainState
-from onyx.agents.agent_search.dr.sub_agents.basic_search.dr_basic_search_graph_builder import (
-    dr_basic_search_graph_builder,
-)
-from onyx.agents.agent_search.dr.sub_agents.custom_tool.dr_custom_tool_graph_builder import (
-    dr_custom_tool_graph_builder,
-)
-from onyx.agents.agent_search.dr.sub_agents.generic_internal_tool.dr_generic_internal_tool_graph_builder import (
-    dr_generic_internal_tool_graph_builder,
-)
-from onyx.agents.agent_search.dr.sub_agents.image_generation.dr_image_generation_graph_builder import (
-    dr_image_generation_graph_builder,
-)
-from onyx.agents.agent_search.dr.sub_agents.kg_search.dr_kg_search_graph_builder import (
-    dr_kg_search_graph_builder,
-)
-from onyx.agents.agent_search.dr.sub_agents.web_search.dr_ws_graph_builder import (
-    dr_ws_graph_builder,
-)
-
-# from onyx.agents.agent_search.dr.sub_agents.basic_search.dr_basic_search_2_act import search
-
-
-def dr_graph_builder() -> StateGraph:
-    """
-    LangGraph graph builder for the deep research agent.
-    """
-
-    graph = StateGraph(state_schema=MainState, input=MainInput)
-
-    ### Add nodes ###
-
-    graph.add_node(DRPath.CLARIFIER, clarifier)
-
-    graph.add_node(DRPath.ORCHESTRATOR, orchestrator)
-
-    basic_search_graph = dr_basic_search_graph_builder().compile()
-    graph.add_node(DRPath.INTERNAL_SEARCH, basic_search_graph)
-
-    kg_search_graph = dr_kg_search_graph_builder().compile()
-    graph.add_node(DRPath.KNOWLEDGE_GRAPH, kg_search_graph)
-
-    internet_search_graph = dr_ws_graph_builder().compile()
-    graph.add_node(DRPath.WEB_SEARCH, internet_search_graph)
-
-    image_generation_graph = dr_image_generation_graph_builder().compile()
-    graph.add_node(DRPath.IMAGE_GENERATION, image_generation_graph)
-
-    custom_tool_graph = dr_custom_tool_graph_builder().compile()
-    graph.add_node(DRPath.GENERIC_TOOL, custom_tool_graph)
-
-    generic_internal_tool_graph = dr_generic_internal_tool_graph_builder().compile()
-    graph.add_node(DRPath.GENERIC_INTERNAL_TOOL, generic_internal_tool_graph)
-
-    graph.add_node(DRPath.CLOSER, closer)
-    graph.add_node(DRPath.LOGGER, logging)
-
-    ### Add edges ###
-
-    graph.add_edge(start_key=START, end_key=DRPath.CLARIFIER)
-
-    graph.add_conditional_edges(DRPath.CLARIFIER, decision_router)
-
-    graph.add_conditional_edges(DRPath.ORCHESTRATOR, decision_router)
-
-    graph.add_edge(start_key=DRPath.INTERNAL_SEARCH, end_key=DRPath.ORCHESTRATOR)
-    graph.add_edge(start_key=DRPath.KNOWLEDGE_GRAPH, end_key=DRPath.ORCHESTRATOR)
-    graph.add_edge(start_key=DRPath.WEB_SEARCH, end_key=DRPath.ORCHESTRATOR)
-    graph.add_edge(start_key=DRPath.IMAGE_GENERATION, end_key=DRPath.ORCHESTRATOR)
-    graph.add_edge(start_key=DRPath.GENERIC_TOOL, end_key=DRPath.ORCHESTRATOR)
-    graph.add_edge(start_key=DRPath.GENERIC_INTERNAL_TOOL, end_key=DRPath.ORCHESTRATOR)
-
-    graph.add_conditional_edges(DRPath.CLOSER, completeness_router)
-    graph.add_edge(start_key=DRPath.LOGGER, end_key=END)
-
-    return graph

backend/onyx/agents/agent_search/dr/models.py

@@ -1,131 +0,0 @@
-from enum import Enum
-
-from pydantic import BaseModel
-from pydantic import ConfigDict
-
-from onyx.agents.agent_search.dr.enums import DRPath
-from onyx.agents.agent_search.dr.sub_agents.image_generation.models import (
-    GeneratedImage,
-)
-from onyx.context.search.models import InferenceSection
-from onyx.tools.tool import Tool
-
-
-class OrchestratorStep(BaseModel):
-    tool: str
-    questions: list[str]
-
-
-class OrchestratorDecisonsNoPlan(BaseModel):
-    reasoning: str
-    next_step: OrchestratorStep
-
-
-class OrchestrationPlan(BaseModel):
-    reasoning: str
-    plan: str
-
-
-class ClarificationGenerationResponse(BaseModel):
-    clarification_needed: bool
-    clarification_question: str
-
-
-class DecisionResponse(BaseModel):
-    reasoning: str
-    decision: str
-
-
-class QueryEvaluationResponse(BaseModel):
-    reasoning: str
-    query_permitted: bool
-
-
-class OrchestrationClarificationInfo(BaseModel):
-    clarification_question: str
-    clarification_response: str | None = None
-
-
-class WebSearchAnswer(BaseModel):
-    urls_to_open_indices: list[int]
-
-
-class SearchAnswer(BaseModel):
-    reasoning: str
-    answer: str
-    claims: list[str] | None = None
-
-
-class TestInfoCompleteResponse(BaseModel):
-    reasoning: str
-    complete: bool
-    gaps: list[str]
-
-
-# TODO: revisit with custom tools implementation in v2
-# each tool should be a class with the attributes below, plus the actual tool implementation
-# this will also allow custom tools to have their own cost
-class OrchestratorTool(BaseModel):
-    tool_id: int
-    name: str
-    llm_path: str  # the path for the LLM to refer by
-    path: DRPath  # the actual path in the graph
-    description: str
-    metadata: dict[str, str]
-    cost: float
-    tool_object: Tool | None = None  # None for CLOSER
-
-    model_config = ConfigDict(arbitrary_types_allowed=True)
-
-
-class IterationInstructions(BaseModel):
-    iteration_nr: int
-    plan: str | None
-    reasoning: str
-    purpose: str
-
-
-class IterationAnswer(BaseModel):
-    tool: str
-    tool_id: int
-    iteration_nr: int
-    parallelization_nr: int
-    question: str
-    reasoning: str | None
-    answer: str
-    cited_documents: dict[int, InferenceSection]
-    background_info: str | None = None
-    claims: list[str] | None = None
-    additional_data: dict[str, str] | None = None
-    response_type: str | None = None
-    data: dict | list | str | int | float | bool | None = None
-    file_ids: list[str] | None = None
-    # TODO: This is not ideal, but we'll can rework the schema
-    # for deep research later
-    is_web_fetch: bool = False
-    # for image generation step-types
-    generated_images: list[GeneratedImage] | None = None
-    # for multi-query search tools (v2 web search and internal search)
-    # TODO: Clean this up to be more flexible to tools
-    queries: list[str] | None = None
-
-
-class AggregatedDRContext(BaseModel):
-    context: str
-    cited_documents: list[InferenceSection]
-    is_internet_marker_dict: dict[str, bool]
-    global_iteration_responses: list[IterationAnswer]
-
-
-class DRPromptPurpose(str, Enum):
-    PLAN = "PLAN"
-    NEXT_STEP = "NEXT_STEP"
-    NEXT_STEP_REASONING = "NEXT_STEP_REASONING"
-    NEXT_STEP_PURPOSE = "NEXT_STEP_PURPOSE"
-    CLARIFICATION = "CLARIFICATION"
-
-
-class BaseSearchProcessingResponse(BaseModel):
-    specified_source_types: list[str]
-    rewritten_query: str
-    time_filter: str

backend/onyx/agents/agent_search/dr/nodes/dr_a0_clarification.py

@@ -1,918 +0,0 @@
-import re
-from datetime import datetime
-from typing import Any
-from typing import cast
-
-from braintrust import traced
-from langchain_core.messages import HumanMessage
-from langchain_core.messages import merge_content
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-from sqlalchemy.orm import Session
-
-from onyx.agents.agent_search.dr.constants import AVERAGE_TOOL_COSTS
-from onyx.agents.agent_search.dr.constants import MAX_CHAT_HISTORY_MESSAGES
-from onyx.agents.agent_search.dr.dr_prompt_builder import (
-    get_dr_prompt_orchestration_templates,
-)
-from onyx.agents.agent_search.dr.enums import DRPath
-from onyx.agents.agent_search.dr.enums import ResearchAnswerPurpose
-from onyx.agents.agent_search.dr.enums import ResearchType
-from onyx.agents.agent_search.dr.models import ClarificationGenerationResponse
-from onyx.agents.agent_search.dr.models import DecisionResponse
-from onyx.agents.agent_search.dr.models import DRPromptPurpose
-from onyx.agents.agent_search.dr.models import OrchestrationClarificationInfo
-from onyx.agents.agent_search.dr.models import OrchestratorTool
-from onyx.agents.agent_search.dr.process_llm_stream import (
-    BasicSearchProcessedStreamResults,
-)
-from onyx.agents.agent_search.dr.process_llm_stream import process_llm_stream
-from onyx.agents.agent_search.dr.states import MainState
-from onyx.agents.agent_search.dr.states import OrchestrationSetup
-from onyx.agents.agent_search.dr.utils import get_chat_history_string
-from onyx.agents.agent_search.models import GraphConfig
-from onyx.agents.agent_search.shared_graph_utils.llm import invoke_llm_json
-from onyx.agents.agent_search.shared_graph_utils.llm import stream_llm_answer
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.agents.agent_search.shared_graph_utils.utils import run_with_timeout
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.agents.agent_search.utils import create_question_prompt
-from onyx.chat.chat_utils import build_citation_map_from_numbers
-from onyx.chat.chat_utils import saved_search_docs_from_llm_docs
-from onyx.chat.memories import get_memories
-from onyx.chat.models import PromptConfig
-from onyx.chat.prompt_builder.citations_prompt import build_citations_system_message
-from onyx.chat.prompt_builder.citations_prompt import build_citations_user_message
-from onyx.chat.stream_processing.citation_processing import (
-    normalize_square_bracket_citations_to_double_with_links,
-)
-from onyx.configs.agent_configs import TF_DR_TIMEOUT_LONG
-from onyx.configs.agent_configs import TF_DR_TIMEOUT_SHORT
-from onyx.configs.constants import DocumentSource
-from onyx.configs.constants import DocumentSourceDescription
-from onyx.configs.constants import TMP_DRALPHA_PERSONA_NAME
-from onyx.db.chat import create_search_doc_from_saved_search_doc
-from onyx.db.chat import update_db_session_with_messages
-from onyx.db.connector import fetch_unique_document_sources
-from onyx.db.kg_config import get_kg_config_settings
-from onyx.db.models import SearchDoc
-from onyx.db.models import Tool
-from onyx.db.tools import get_tools
-from onyx.file_store.models import ChatFileType
-from onyx.file_store.models import InMemoryChatFile
-from onyx.kg.utils.extraction_utils import get_entity_types_str
-from onyx.kg.utils.extraction_utils import get_relationship_types_str
-from onyx.llm.utils import check_number_of_tokens
-from onyx.llm.utils import get_max_input_tokens
-from onyx.natural_language_processing.utils import get_tokenizer
-from onyx.prompts.chat_prompts import PROJECT_INSTRUCTIONS_SEPARATOR
-from onyx.prompts.dr_prompts import ANSWER_PROMPT_WO_TOOL_CALLING
-from onyx.prompts.dr_prompts import DECISION_PROMPT_W_TOOL_CALLING
-from onyx.prompts.dr_prompts import DECISION_PROMPT_WO_TOOL_CALLING
-from onyx.prompts.dr_prompts import DEFAULT_DR_SYSTEM_PROMPT
-from onyx.prompts.dr_prompts import REPEAT_PROMPT
-from onyx.prompts.dr_prompts import TOOL_DESCRIPTION
-from onyx.prompts.prompt_template import PromptTemplate
-from onyx.prompts.prompt_utils import handle_company_awareness
-from onyx.prompts.prompt_utils import handle_memories
-from onyx.server.query_and_chat.streaming_models import MessageStart
-from onyx.server.query_and_chat.streaming_models import OverallStop
-from onyx.server.query_and_chat.streaming_models import SectionEnd
-from onyx.server.query_and_chat.streaming_models import StreamingType
-from onyx.tools.tool_implementations.images.image_generation_tool import (
-    ImageGenerationTool,
-)
-from onyx.tools.tool_implementations.knowledge_graph.knowledge_graph_tool import (
-    KnowledgeGraphTool,
-)
-from onyx.tools.tool_implementations.search.search_tool import SearchTool
-from onyx.tools.tool_implementations.web_search.web_search_tool import (
-    WebSearchTool,
-)
-from onyx.utils.b64 import get_image_type
-from onyx.utils.b64 import get_image_type_from_bytes
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-def _get_available_tools(
-    db_session: Session,
-    graph_config: GraphConfig,
-    kg_enabled: bool,
-    active_source_types: list[DocumentSource],
-) -> dict[str, OrchestratorTool]:
-
-    available_tools: dict[str, OrchestratorTool] = {}
-
-    kg_enabled = graph_config.behavior.kg_config_settings.KG_ENABLED
-    persona = graph_config.inputs.persona
-
-    if persona:
-        include_kg = persona.name == TMP_DRALPHA_PERSONA_NAME and kg_enabled
-    else:
-        include_kg = False
-
-    tool_dict: dict[int, Tool] = {
-        tool.id: tool for tool in get_tools(db_session, only_enabled=True)
-    }
-
-    for tool in graph_config.tooling.tools:
-
-        if not tool.is_available(db_session):
-            logger.info(f"Tool {tool.name} is not available, skipping")
-            continue
-
-        tool_db_info = tool_dict.get(tool.id)
-        if tool_db_info:
-            incode_tool_id = tool_db_info.in_code_tool_id
-        else:
-            raise ValueError(f"Tool {tool.name} is not found in the database")
-
-        if isinstance(tool, WebSearchTool):
-            llm_path = DRPath.WEB_SEARCH.value
-            path = DRPath.WEB_SEARCH
-        elif isinstance(tool, SearchTool):
-            llm_path = DRPath.INTERNAL_SEARCH.value
-            path = DRPath.INTERNAL_SEARCH
-        elif isinstance(tool, KnowledgeGraphTool) and include_kg:
-            # TODO (chris): move this into the `is_available` check
-            if len(active_source_types) == 0:
-                logger.error(
-                    "No active source types found, skipping Knowledge Graph tool"
-                )
-                continue
-            llm_path = DRPath.KNOWLEDGE_GRAPH.value
-            path = DRPath.KNOWLEDGE_GRAPH
-        elif isinstance(tool, ImageGenerationTool):
-            llm_path = DRPath.IMAGE_GENERATION.value
-            path = DRPath.IMAGE_GENERATION
-        elif incode_tool_id:
-            # if incode tool id is found, it is a generic internal tool
-            llm_path = DRPath.GENERIC_INTERNAL_TOOL.value
-            path = DRPath.GENERIC_INTERNAL_TOOL
-        else:
-            # otherwise it is a custom tool
-            llm_path = DRPath.GENERIC_TOOL.value
-            path = DRPath.GENERIC_TOOL
-
-        if path not in {DRPath.GENERIC_INTERNAL_TOOL, DRPath.GENERIC_TOOL}:
-            description = TOOL_DESCRIPTION.get(path, tool.description)
-            cost = AVERAGE_TOOL_COSTS[path]
-        else:
-            description = tool.description
-            cost = 1.0
-
-        tool_info = OrchestratorTool(
-            tool_id=tool.id,
-            name=tool.llm_name,
-            llm_path=llm_path,
-            path=path,
-            description=description,
-            metadata={},
-            cost=cost,
-            tool_object=tool,
-        )
-
-        # TODO: handle custom tools with same name as other tools (e.g., CLOSER)
-        available_tools[tool.llm_name] = tool_info
-
-    available_tool_paths = [tool.path for tool in available_tools.values()]
-
-    # make sure KG isn't enabled without internal search
-    if (
-        DRPath.KNOWLEDGE_GRAPH in available_tool_paths
-        and DRPath.INTERNAL_SEARCH not in available_tool_paths
-    ):
-        raise ValueError(
-            "The Knowledge Graph is not supported without internal search tool"
-        )
-
-    # add CLOSER tool, which is always available
-    available_tools[DRPath.CLOSER.value] = OrchestratorTool(
-        tool_id=-1,
-        name=DRPath.CLOSER.value,
-        llm_path=DRPath.CLOSER.value,
-        path=DRPath.CLOSER,
-        description=TOOL_DESCRIPTION[DRPath.CLOSER],
-        metadata={},
-        cost=0.0,
-        tool_object=None,
-    )
-
-    return available_tools
-
-
-def _construct_uploaded_text_context(files: list[InMemoryChatFile]) -> str:
-    """Construct the uploaded context from the files."""
-    file_contents = []
-    for file in files:
-        if file.file_type in (
-            ChatFileType.DOC,
-            ChatFileType.PLAIN_TEXT,
-            ChatFileType.CSV,
-        ):
-            file_contents.append(file.content.decode("utf-8"))
-    if len(file_contents) > 0:
-        return "Uploaded context:\n\n\n" + "\n\n".join(file_contents)
-    return ""
-
-
-def _construct_uploaded_image_context(
-    files: list[InMemoryChatFile] | None = None,
-    img_urls: list[str] | None = None,
-    b64_imgs: list[str] | None = None,
-) -> list[dict[str, Any]] | None:
-    """Construct the uploaded image context from the files."""
-    # Only include image files for user messages
-    if files is None:
-        return None
-
-    img_files = [file for file in files if file.file_type == ChatFileType.IMAGE]
-
-    img_urls = img_urls or []
-    b64_imgs = b64_imgs or []
-
-    if not (img_files or img_urls or b64_imgs):
-        return None
-
-    return cast(
-        list[dict[str, Any]],
-        [
-            {
-                "type": "image_url",
-                "image_url": {
-                    "url": (
-                        f"data:{get_image_type_from_bytes(file.content)};"
-                        f"base64,{file.to_base64()}"
-                    ),
-                },
-            }
-            for file in img_files
-        ]
-        + [
-            {
-                "type": "image_url",
-                "image_url": {
-                    "url": f"data:{get_image_type(b64_img)};base64,{b64_img}",
-                },
-            }
-            for b64_img in b64_imgs
-        ]
-        + [
-            {
-                "type": "image_url",
-                "image_url": {
-                    "url": url,
-                },
-            }
-            for url in img_urls
-        ],
-    )
-
-
-def _get_existing_clarification_request(
-    graph_config: GraphConfig,
-) -> tuple[OrchestrationClarificationInfo, str, str] | None:
-    """
-    Returns the clarification info, original question, and updated chat history if
-    a clarification request and response exists, otherwise returns None.
-    """
-    # check for clarification request and response in message history
-    previous_raw_messages = graph_config.inputs.prompt_builder.raw_message_history
-
-    if len(previous_raw_messages) == 0 or (
-        previous_raw_messages[-1].research_answer_purpose
-        != ResearchAnswerPurpose.CLARIFICATION_REQUEST
-    ):
-        return None
-
-    # get the clarification request and response
-    previous_messages = graph_config.inputs.prompt_builder.message_history
-    last_message = previous_raw_messages[-1].message
-
-    clarification = OrchestrationClarificationInfo(
-        clarification_question=last_message.strip(),
-        clarification_response=graph_config.inputs.prompt_builder.raw_user_query,
-    )
-    original_question = graph_config.inputs.prompt_builder.raw_user_query
-    chat_history_string = "(No chat history yet available)"
-
-    # get the original user query and chat history string before the original query
-    # e.g., if history = [user query, assistant clarification request, user clarification response],
-    # previous_messages = [user query, assistant clarification request], we want the user query
-    for i, message in enumerate(reversed(previous_messages), 1):
-        if (
-            isinstance(message, HumanMessage)
-            and message.content
-            and isinstance(message.content, str)
-        ):
-            original_question = message.content
-            chat_history_string = (
-                get_chat_history_string(
-                    graph_config.inputs.prompt_builder.message_history[:-i],
-                    MAX_CHAT_HISTORY_MESSAGES,
-                )
-                or "(No chat history yet available)"
-            )
-            break
-
-    return clarification, original_question, chat_history_string
-
-
-def _persist_final_docs_and_citations(
-    db_session: Session,
-    context_llm_docs: list[Any] | None,
-    full_answer: str | None,
-) -> tuple[list[SearchDoc], dict[int, int] | None]:
-    """Persist final documents from in-context docs and derive citation mapping.
-
-    Returns the list of persisted `SearchDoc` records and an optional
-    citation map translating inline [[n]] references to DB doc indices.
-    """
-    final_documents_db: list[SearchDoc] = []
-    citations_map: dict[int, int] | None = None
-
-    if not context_llm_docs:
-        return final_documents_db, citations_map
-
-    saved_search_docs = saved_search_docs_from_llm_docs(context_llm_docs)
-    for saved_doc in saved_search_docs:
-        db_doc = create_search_doc_from_saved_search_doc(saved_doc)
-        db_session.add(db_doc)
-        final_documents_db.append(db_doc)
-    db_session.flush()
-
-    cited_numbers: set[int] = set()
-    try:
-        # Match [[1]] or [[1, 2]] optionally followed by a link like ([[1]](http...))
-        matches = re.findall(
-            r"\[\[(\d+(?:,\s*\d+)*)\]\](?:\([^)]*\))?", full_answer or ""
-        )
-        for match in matches:
-            for num_str in match.split(","):
-                num = int(num_str.strip())
-                cited_numbers.add(num)
-    except Exception:
-        cited_numbers = set()
-
-    if cited_numbers and final_documents_db:
-        translations = build_citation_map_from_numbers(
-            cited_numbers=cited_numbers,
-            db_docs=final_documents_db,
-        )
-        citations_map = translations or None
-
-    return final_documents_db, citations_map
-
-
-_ARTIFICIAL_ALL_ENCOMPASSING_TOOL = {
-    "type": "function",
-    "function": {
-        "name": "run_any_knowledge_retrieval_and_any_action_tool",
-        "description": "Use this tool to get ANY external information \
-that is relevant to the question, or for any action to be taken, including image generation. In fact, \
-ANY tool mentioned can be accessed through this generic tool. If in doubt, use this tool.",
-        "parameters": {
-            "type": "object",
-            "properties": {
-                "request": {
-                    "type": "string",
-                    "description": "The request to be made to the tool",
-                },
-            },
-            "required": ["request"],
-        },
-    },
-}
-
-
-def clarifier(
-    state: MainState, config: RunnableConfig, writer: StreamWriter = lambda _: None
-) -> OrchestrationSetup:
-    """
-    Perform a quick search on the question as is and see whether a set of clarification
-    questions is needed. For now this is based on the models
-    """
-
-    node_start_time = datetime.now()
-    current_step_nr = 0
-
-    graph_config = cast(GraphConfig, config["metadata"]["config"])
-
-    llm_provider = graph_config.tooling.primary_llm.config.model_provider
-    llm_model_name = graph_config.tooling.primary_llm.config.model_name
-
-    llm_tokenizer = get_tokenizer(
-        model_name=llm_model_name,
-        provider_type=llm_provider,
-    )
-
-    max_input_tokens = get_max_input_tokens(
-        model_name=llm_model_name,
-        model_provider=llm_provider,
-    )
-
-    use_tool_calling_llm = graph_config.tooling.using_tool_calling_llm
-    db_session = graph_config.persistence.db_session
-
-    original_question = graph_config.inputs.prompt_builder.raw_user_query
-    research_type = graph_config.behavior.research_type
-
-    force_use_tool = graph_config.tooling.force_use_tool
-
-    message_id = graph_config.persistence.message_id
-
-    # Perform a commit to ensure the message_id is set and saved
-    db_session.commit()
-
-    # get the connected tools and format for the Deep Research flow
-    kg_enabled = graph_config.behavior.kg_config_settings.KG_ENABLED
-    db_session = graph_config.persistence.db_session
-    active_source_types = fetch_unique_document_sources(db_session)
-
-    available_tools = _get_available_tools(
-        db_session, graph_config, kg_enabled, active_source_types
-    )
-
-    available_tool_descriptions_str = "\n -" + "\n -".join(
-        [tool.description for tool in available_tools.values()]
-    )
-
-    kg_config = get_kg_config_settings()
-    if kg_config.KG_ENABLED and kg_config.KG_EXPOSED:
-        all_entity_types = get_entity_types_str(active=True)
-        all_relationship_types = get_relationship_types_str(active=True)
-    else:
-        all_entity_types = ""
-        all_relationship_types = ""
-
-    # if not active_source_types:
-    #    raise ValueError("No active source types found")
-
-    active_source_types_descriptions = [
-        DocumentSourceDescription[source_type] for source_type in active_source_types
-    ]
-
-    if len(active_source_types_descriptions) > 0:
-        active_source_type_descriptions_str = "\n -" + "\n -".join(
-            active_source_types_descriptions
-        )
-    else:
-        active_source_type_descriptions_str = ""
-
-    if graph_config.inputs.persona:
-        assistant_system_prompt = PromptTemplate(
-            graph_config.inputs.persona.system_prompt or DEFAULT_DR_SYSTEM_PROMPT
-        ).build()
-        if graph_config.inputs.persona.task_prompt:
-            assistant_task_prompt = (
-                "\n\nHere are more specifications from the user:\n\n"
-                + PromptTemplate(graph_config.inputs.persona.task_prompt).build()
-            )
-        else:
-            assistant_task_prompt = ""
-
-    else:
-        assistant_system_prompt = PromptTemplate(DEFAULT_DR_SYSTEM_PROMPT).build()
-        assistant_task_prompt = ""
-
-    if graph_config.inputs.project_instructions:
-        assistant_system_prompt = (
-            assistant_system_prompt
-            + PROJECT_INSTRUCTIONS_SEPARATOR
-            + graph_config.inputs.project_instructions
-        )
-    user = (
-        graph_config.tooling.search_tool.user
-        if graph_config.tooling.search_tool
-        else None
-    )
-    memories = get_memories(user, db_session)
-    assistant_system_prompt = handle_company_awareness(assistant_system_prompt)
-    assistant_system_prompt = handle_memories(assistant_system_prompt, memories)
-
-    chat_history_string = (
-        get_chat_history_string(
-            graph_config.inputs.prompt_builder.message_history,
-            MAX_CHAT_HISTORY_MESSAGES,
-        )
-        or "(No chat history yet available)"
-    )
-
-    uploaded_text_context = (
-        _construct_uploaded_text_context(graph_config.inputs.files)
-        if graph_config.inputs.files
-        else ""
-    )
-
-    uploaded_context_tokens = check_number_of_tokens(
-        uploaded_text_context, llm_tokenizer.encode
-    )
-
-    if uploaded_context_tokens > 0.5 * max_input_tokens:
-        raise ValueError(
-            f"Uploaded context is too long. {uploaded_context_tokens} tokens, "
-            f"but for this model we only allow {0.5 * max_input_tokens} tokens for uploaded context"
-        )
-
-    uploaded_image_context = _construct_uploaded_image_context(
-        graph_config.inputs.files
-    )
-
-    # Use project/search context docs if available to enable citation mapping
-    context_llm_docs = getattr(
-        graph_config.inputs.prompt_builder, "context_llm_docs", None
-    )
-
-    if not (force_use_tool and force_use_tool.force_use):
-
-        if not use_tool_calling_llm or len(available_tools) == 1:
-            if len(available_tools) > 1:
-                decision_prompt = DECISION_PROMPT_WO_TOOL_CALLING.build(
-                    question=original_question,
-                    chat_history_string=chat_history_string,
-                    uploaded_context=uploaded_text_context or "",
-                    active_source_type_descriptions_str=active_source_type_descriptions_str,
-                    available_tool_descriptions_str=available_tool_descriptions_str,
-                )
-
-                llm_decision = invoke_llm_json(
-                    llm=graph_config.tooling.primary_llm,
-                    prompt=create_question_prompt(
-                        assistant_system_prompt,
-                        decision_prompt,
-                        uploaded_image_context=uploaded_image_context,
-                    ),
-                    schema=DecisionResponse,
-                )
-            else:
-                # if there is only one tool (Closer), we don't need to decide. It's an LLM answer
-                llm_decision = DecisionResponse(decision="LLM", reasoning="")
-
-            if llm_decision.decision == "LLM" and research_type != ResearchType.DEEP:
-
-                write_custom_event(
-                    current_step_nr,
-                    MessageStart(
-                        content="",
-                        final_documents=[],
-                    ),
-                    writer,
-                )
-
-                answer_prompt = ANSWER_PROMPT_WO_TOOL_CALLING.build(
-                    question=original_question,
-                    chat_history_string=chat_history_string,
-                    uploaded_context=uploaded_text_context or "",
-                    active_source_type_descriptions_str=active_source_type_descriptions_str,
-                    available_tool_descriptions_str=available_tool_descriptions_str,
-                )
-
-                answer_tokens, _, _ = run_with_timeout(
-                    TF_DR_TIMEOUT_LONG,
-                    lambda: stream_llm_answer(
-                        llm=graph_config.tooling.primary_llm,
-                        prompt=create_question_prompt(
-                            assistant_system_prompt,
-                            answer_prompt + assistant_task_prompt,
-                            uploaded_image_context=uploaded_image_context,
-                        ),
-                        event_name="basic_response",
-                        writer=writer,
-                        answer_piece=StreamingType.MESSAGE_DELTA.value,
-                        agent_answer_level=0,
-                        agent_answer_question_num=0,
-                        agent_answer_type="agent_level_answer",
-                        timeout_override=TF_DR_TIMEOUT_LONG,
-                        ind=current_step_nr,
-                        context_docs=None,
-                        replace_citations=True,
-                        max_tokens=None,
-                    ),
-                )
-
-                write_custom_event(
-                    current_step_nr,
-                    SectionEnd(
-                        type="section_end",
-                    ),
-                    writer,
-                )
-                current_step_nr += 1
-
-                answer_str = cast(str, merge_content(*answer_tokens))
-
-                write_custom_event(
-                    current_step_nr,
-                    OverallStop(),
-                    writer,
-                )
-
-                update_db_session_with_messages(
-                    db_session=db_session,
-                    chat_message_id=message_id,
-                    chat_session_id=graph_config.persistence.chat_session_id,
-                    is_agentic=graph_config.behavior.use_agentic_search,
-                    message=answer_str,
-                    update_parent_message=True,
-                    research_answer_purpose=ResearchAnswerPurpose.ANSWER,
-                )
-                db_session.commit()
-
-                return OrchestrationSetup(
-                    original_question=original_question,
-                    chat_history_string="",
-                    tools_used=[DRPath.END.value],
-                    available_tools=available_tools,
-                    query_list=[],
-                    assistant_system_prompt=assistant_system_prompt,
-                    assistant_task_prompt=assistant_task_prompt,
-                )
-
-        else:
-
-            decision_prompt = DECISION_PROMPT_W_TOOL_CALLING.build(
-                question=original_question,
-                chat_history_string=chat_history_string,
-                uploaded_context=uploaded_text_context or "",
-                active_source_type_descriptions_str=active_source_type_descriptions_str,
-            )
-
-            if context_llm_docs:
-                persona = graph_config.inputs.persona
-                if persona is not None:
-                    prompt_config = PromptConfig.from_model(
-                        persona, db_session=graph_config.persistence.db_session
-                    )
-                else:
-                    prompt_config = PromptConfig(
-                        default_behavior_system_prompt=assistant_system_prompt,
-                        custom_instructions=None,
-                        reminder="",
-                        datetime_aware=True,
-                    )
-
-                system_prompt_to_use_content = build_citations_system_message(
-                    prompt_config
-                ).content
-                system_prompt_to_use: str = cast(str, system_prompt_to_use_content)
-                if graph_config.inputs.project_instructions:
-                    system_prompt_to_use = (
-                        system_prompt_to_use
-                        + PROJECT_INSTRUCTIONS_SEPARATOR
-                        + graph_config.inputs.project_instructions
-                    )
-                user_prompt_to_use = build_citations_user_message(
-                    user_query=original_question,
-                    files=[],
-                    prompt_config=prompt_config,
-                    context_docs=context_llm_docs,
-                    all_doc_useful=False,
-                    history_message=chat_history_string,
-                    context_type="user files",
-                ).content
-            else:
-                system_prompt_to_use = assistant_system_prompt
-                user_prompt_to_use = decision_prompt + assistant_task_prompt
-
-            @traced(name="clarifier stream and process", type="llm")
-            def stream_and_process() -> BasicSearchProcessedStreamResults:
-                stream = graph_config.tooling.primary_llm.stream_langchain(
-                    prompt=create_question_prompt(
-                        cast(str, system_prompt_to_use),
-                        cast(str, user_prompt_to_use),
-                        uploaded_image_context=uploaded_image_context,
-                    ),
-                    tools=([_ARTIFICIAL_ALL_ENCOMPASSING_TOOL]),
-                    tool_choice=(None),
-                    structured_response_format=graph_config.inputs.structured_response_format,
-                )
-                return process_llm_stream(
-                    messages=stream,
-                    should_stream_answer=True,
-                    writer=writer,
-                    ind=0,
-                    search_results=context_llm_docs,
-                    generate_final_answer=True,
-                    chat_message_id=str(graph_config.persistence.chat_session_id),
-                )
-
-            # Deep research always continues to clarification or search
-            if research_type != ResearchType.DEEP:
-                full_response = stream_and_process()
-                if len(full_response.ai_message_chunk.tool_calls) == 0:
-
-                    if isinstance(full_response.full_answer, str):
-                        full_answer = (
-                            normalize_square_bracket_citations_to_double_with_links(
-                                full_response.full_answer
-                            )
-                        )
-                    else:
-                        full_answer = None
-
-                    # Persist final documents and derive citations when using in-context docs
-                    final_documents_db, citations_map = (
-                        _persist_final_docs_and_citations(
-                            db_session=db_session,
-                            context_llm_docs=context_llm_docs,
-                            full_answer=full_answer,
-                        )
-                    )
-
-                    update_db_session_with_messages(
-                        db_session=db_session,
-                        chat_message_id=message_id,
-                        chat_session_id=graph_config.persistence.chat_session_id,
-                        is_agentic=graph_config.behavior.use_agentic_search,
-                        message=full_answer,
-                        token_count=len(llm_tokenizer.encode(full_answer or "")),
-                        citations=citations_map,
-                        final_documents=final_documents_db or None,
-                        update_parent_message=True,
-                        research_answer_purpose=ResearchAnswerPurpose.ANSWER,
-                    )
-
-                    db_session.commit()
-
-                    return OrchestrationSetup(
-                        original_question=original_question,
-                        chat_history_string="",
-                        tools_used=[DRPath.END.value],
-                        query_list=[],
-                        available_tools=available_tools,
-                        assistant_system_prompt=assistant_system_prompt,
-                        assistant_task_prompt=assistant_task_prompt,
-                    )
-
-        # Continue, as external knowledge is required.
-
-    current_step_nr += 1
-
-    clarification = None
-
-    if research_type == ResearchType.DEEP:
-        result = _get_existing_clarification_request(graph_config)
-        if result is not None:
-            clarification, original_question, chat_history_string = result
-        else:
-            # generate clarification questions if needed
-            chat_history_string = (
-                get_chat_history_string(
-                    graph_config.inputs.prompt_builder.message_history,
-                    MAX_CHAT_HISTORY_MESSAGES,
-                )
-                or "(No chat history yet available)"
-            )
-
-            base_clarification_prompt = get_dr_prompt_orchestration_templates(
-                DRPromptPurpose.CLARIFICATION,
-                research_type,
-                entity_types_string=all_entity_types,
-                relationship_types_string=all_relationship_types,
-                available_tools=available_tools,
-            )
-            clarification_prompt = base_clarification_prompt.build(
-                question=original_question,
-                chat_history_string=chat_history_string,
-            )
-
-            try:
-                clarification_response = invoke_llm_json(
-                    llm=graph_config.tooling.primary_llm,
-                    prompt=create_question_prompt(
-                        assistant_system_prompt,
-                        clarification_prompt,
-                        uploaded_image_context=uploaded_image_context,
-                    ),
-                    schema=ClarificationGenerationResponse,
-                    timeout_override=TF_DR_TIMEOUT_SHORT,
-                    # max_tokens=1500,
-                )
-            except Exception as e:
-                logger.error(f"Error in clarification generation: {e}")
-                raise e
-
-            if (
-                clarification_response.clarification_needed
-                and clarification_response.clarification_question
-            ):
-                clarification = OrchestrationClarificationInfo(
-                    clarification_question=clarification_response.clarification_question,
-                    clarification_response=None,
-                )
-                write_custom_event(
-                    current_step_nr,
-                    MessageStart(
-                        content="",
-                        final_documents=None,
-                    ),
-                    writer,
-                )
-
-                repeat_prompt = REPEAT_PROMPT.build(
-                    original_information=clarification_response.clarification_question
-                )
-
-                _, _, _ = run_with_timeout(
-                    TF_DR_TIMEOUT_LONG,
-                    lambda: stream_llm_answer(
-                        llm=graph_config.tooling.primary_llm,
-                        prompt=repeat_prompt,
-                        event_name="basic_response",
-                        writer=writer,
-                        agent_answer_level=0,
-                        agent_answer_question_num=0,
-                        agent_answer_type="agent_level_answer",
-                        timeout_override=TF_DR_TIMEOUT_LONG,
-                        answer_piece=StreamingType.MESSAGE_DELTA.value,
-                        ind=current_step_nr,
-                        # max_tokens=None,
-                    ),
-                )
-
-                write_custom_event(
-                    current_step_nr,
-                    SectionEnd(
-                        type="section_end",
-                    ),
-                    writer,
-                )
-
-                write_custom_event(
-                    1,
-                    OverallStop(),
-                    writer,
-                )
-
-                update_db_session_with_messages(
-                    db_session=db_session,
-                    chat_message_id=message_id,
-                    chat_session_id=graph_config.persistence.chat_session_id,
-                    is_agentic=graph_config.behavior.use_agentic_search,
-                    message=clarification_response.clarification_question,
-                    update_parent_message=True,
-                    research_type=research_type,
-                    research_answer_purpose=ResearchAnswerPurpose.CLARIFICATION_REQUEST,
-                )
-
-                db_session.commit()
-
-    else:
-        chat_history_string = (
-            get_chat_history_string(
-                graph_config.inputs.prompt_builder.message_history,
-                MAX_CHAT_HISTORY_MESSAGES,
-            )
-            or "(No chat history yet available)"
-        )
-
-    if (
-        clarification
-        and clarification.clarification_question
-        and clarification.clarification_response is None
-    ):
-
-        update_db_session_with_messages(
-            db_session=db_session,
-            chat_message_id=message_id,
-            chat_session_id=graph_config.persistence.chat_session_id,
-            is_agentic=graph_config.behavior.use_agentic_search,
-            message=clarification.clarification_question,
-            update_parent_message=True,
-            research_type=research_type,
-            research_answer_purpose=ResearchAnswerPurpose.CLARIFICATION_REQUEST,
-        )
-
-        db_session.commit()
-
-        next_tool = DRPath.END.value
-    else:
-        next_tool = DRPath.ORCHESTRATOR.value
-
-    return OrchestrationSetup(
-        original_question=original_question,
-        chat_history_string=chat_history_string,
-        tools_used=[next_tool],
-        query_list=[],
-        iteration_nr=0,
-        current_step_nr=current_step_nr,
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="main",
-                node_name="clarifier",
-                node_start_time=node_start_time,
-            )
-        ],
-        clarification=clarification,
-        available_tools=available_tools,
-        active_source_types=active_source_types,
-        active_source_types_descriptions="\n".join(active_source_types_descriptions),
-        assistant_system_prompt=assistant_system_prompt,
-        assistant_task_prompt=assistant_task_prompt,
-        uploaded_test_context=uploaded_text_context,
-        uploaded_image_context=uploaded_image_context,
-    )

backend/onyx/agents/agent_search/dr/nodes/dr_a1_orchestrator.py

@@ -1,624 +0,0 @@
-from datetime import datetime
-from typing import cast
-
-from langchain_core.messages import merge_content
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.constants import DR_TIME_BUDGET_BY_TYPE
-from onyx.agents.agent_search.dr.constants import HIGH_LEVEL_PLAN_PREFIX
-from onyx.agents.agent_search.dr.dr_prompt_builder import (
-    get_dr_prompt_orchestration_templates,
-)
-from onyx.agents.agent_search.dr.enums import DRPath
-from onyx.agents.agent_search.dr.enums import ResearchType
-from onyx.agents.agent_search.dr.models import DRPromptPurpose
-from onyx.agents.agent_search.dr.models import OrchestrationPlan
-from onyx.agents.agent_search.dr.models import OrchestratorDecisonsNoPlan
-from onyx.agents.agent_search.dr.states import IterationInstructions
-from onyx.agents.agent_search.dr.states import MainState
-from onyx.agents.agent_search.dr.states import OrchestrationUpdate
-from onyx.agents.agent_search.dr.utils import aggregate_context
-from onyx.agents.agent_search.dr.utils import create_tool_call_string
-from onyx.agents.agent_search.dr.utils import get_prompt_question
-from onyx.agents.agent_search.models import GraphConfig
-from onyx.agents.agent_search.shared_graph_utils.llm import invoke_llm_json
-from onyx.agents.agent_search.shared_graph_utils.llm import stream_llm_answer
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.agents.agent_search.shared_graph_utils.utils import run_with_timeout
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.agents.agent_search.utils import create_question_prompt
-from onyx.configs.agent_configs import TF_DR_TIMEOUT_LONG
-from onyx.configs.agent_configs import TF_DR_TIMEOUT_SHORT
-from onyx.kg.utils.extraction_utils import get_entity_types_str
-from onyx.kg.utils.extraction_utils import get_relationship_types_str
-from onyx.prompts.dr_prompts import DEFAULLT_DECISION_PROMPT
-from onyx.prompts.dr_prompts import REPEAT_PROMPT
-from onyx.prompts.dr_prompts import SUFFICIENT_INFORMATION_STRING
-from onyx.server.query_and_chat.streaming_models import ReasoningStart
-from onyx.server.query_and_chat.streaming_models import SectionEnd
-from onyx.server.query_and_chat.streaming_models import StreamingType
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-_DECISION_SYSTEM_PROMPT_PREFIX = "Here are general instructions by the user, which \
-may or may not influence the decision what to do next:\n\n"
-
-
-def _get_implied_next_tool_based_on_tool_call_history(
-    tools_used: list[str],
-) -> str | None:
-    """
-    Identify the next tool based on the tool call history. Initially, we only support
-    special handling of the image generation tool.
-    """
-    if tools_used[-1] == DRPath.IMAGE_GENERATION.value:
-        return DRPath.LOGGER.value
-    else:
-        return None
-
-
-def orchestrator(
-    state: MainState, config: RunnableConfig, writer: StreamWriter = lambda _: None
-) -> OrchestrationUpdate:
-    """
-    LangGraph node to decide the next step in the DR process.
-    """
-
-    node_start_time = datetime.now()
-
-    graph_config = cast(GraphConfig, config["metadata"]["config"])
-    question = state.original_question
-    if not question:
-        raise ValueError("Question is required for orchestrator")
-
-    state.original_question
-
-    available_tools = state.available_tools
-
-    plan_of_record = state.plan_of_record
-    clarification = state.clarification
-    assistant_system_prompt = state.assistant_system_prompt
-
-    if assistant_system_prompt:
-        decision_system_prompt: str = (
-            DEFAULLT_DECISION_PROMPT
-            + _DECISION_SYSTEM_PROMPT_PREFIX
-            + assistant_system_prompt
-        )
-    else:
-        decision_system_prompt = DEFAULLT_DECISION_PROMPT
-
-    iteration_nr = state.iteration_nr + 1
-    current_step_nr = state.current_step_nr
-
-    research_type = graph_config.behavior.research_type
-    remaining_time_budget = state.remaining_time_budget
-    chat_history_string = state.chat_history_string or "(No chat history yet available)"
-    answer_history_string = (
-        aggregate_context(state.iteration_responses, include_documents=True).context
-        or "(No answer history yet available)"
-    )
-
-    next_tool_name = None
-
-    # Identify early exit condition based on tool call history
-
-    next_tool_based_on_tool_call_history = (
-        _get_implied_next_tool_based_on_tool_call_history(state.tools_used)
-    )
-
-    if next_tool_based_on_tool_call_history == DRPath.LOGGER.value:
-        return OrchestrationUpdate(
-            tools_used=[DRPath.LOGGER.value],
-            query_list=[],
-            iteration_nr=iteration_nr,
-            current_step_nr=current_step_nr,
-            log_messages=[
-                get_langgraph_node_log_string(
-                    graph_component="main",
-                    node_name="orchestrator",
-                    node_start_time=node_start_time,
-                )
-            ],
-            plan_of_record=plan_of_record,
-            remaining_time_budget=remaining_time_budget,
-            iteration_instructions=[
-                IterationInstructions(
-                    iteration_nr=iteration_nr,
-                    plan=plan_of_record.plan if plan_of_record else None,
-                    reasoning="",
-                    purpose="",
-                )
-            ],
-        )
-
-    # no early exit forced. Continue.
-
-    available_tools = state.available_tools or {}
-
-    uploaded_context = state.uploaded_test_context or ""
-    uploaded_image_context = state.uploaded_image_context or []
-
-    questions = [
-        f"{iteration_response.tool}: {iteration_response.question}"
-        for iteration_response in state.iteration_responses
-        if len(iteration_response.question) > 0
-    ]
-
-    question_history_string = (
-        "\n".join(f"  - {question}" for question in questions)
-        if questions
-        else "(No question history yet available)"
-    )
-
-    prompt_question = get_prompt_question(question, clarification)
-
-    gaps_str = (
-        ("\n  - " + "\n  - ".join(state.gaps))
-        if state.gaps
-        else "(No explicit gaps were pointed out so far)"
-    )
-
-    all_entity_types = get_entity_types_str(active=True)
-    all_relationship_types = get_relationship_types_str(active=True)
-
-    # default to closer
-    query_list = ["Answer the question with the information you have."]
-    decision_prompt = None
-
-    reasoning_result = "(No reasoning result provided yet.)"
-    tool_calls_string = "(No tool calls provided yet.)"
-
-    if research_type not in ResearchType:
-        raise ValueError(f"Invalid research type: {research_type}")
-
-    if research_type in [ResearchType.THOUGHTFUL, ResearchType.FAST]:
-        if iteration_nr == 1:
-            remaining_time_budget = DR_TIME_BUDGET_BY_TYPE[research_type]
-
-        elif remaining_time_budget <= 0:
-
-            write_custom_event(
-                current_step_nr,
-                SectionEnd(),
-                writer,
-            )
-
-            current_step_nr += 1
-
-            return OrchestrationUpdate(
-                tools_used=[DRPath.CLOSER.value],
-                current_step_nr=current_step_nr,
-                query_list=[],
-                iteration_nr=iteration_nr,
-                log_messages=[
-                    get_langgraph_node_log_string(
-                        graph_component="main",
-                        node_name="orchestrator",
-                        node_start_time=node_start_time,
-                    )
-                ],
-                plan_of_record=plan_of_record,
-                remaining_time_budget=remaining_time_budget,
-                iteration_instructions=[
-                    IterationInstructions(
-                        iteration_nr=iteration_nr,
-                        plan=None,
-                        reasoning="Time to wrap up.",
-                        purpose="",
-                    )
-                ],
-            )
-
-        elif iteration_nr > 1 and remaining_time_budget > 0:
-            # for each iteration past the first one, we need to see whether we
-            # have enough information to answer the question.
-            # if we do, we can stop the iteration and return the answer.
-            # if we do not, we need to continue the iteration.
-
-            base_reasoning_prompt = get_dr_prompt_orchestration_templates(
-                DRPromptPurpose.NEXT_STEP_REASONING,
-                ResearchType.THOUGHTFUL,
-                entity_types_string=all_entity_types,
-                relationship_types_string=all_relationship_types,
-                available_tools=available_tools,
-            )
-
-            reasoning_prompt = base_reasoning_prompt.build(
-                question=question,
-                chat_history_string=chat_history_string,
-                answer_history_string=answer_history_string,
-                iteration_nr=str(iteration_nr),
-                remaining_time_budget=str(remaining_time_budget),
-                uploaded_context=uploaded_context,
-            )
-
-            reasoning_tokens: list[str] = [""]
-
-            reasoning_tokens, _, _ = run_with_timeout(
-                TF_DR_TIMEOUT_LONG,
-                lambda: stream_llm_answer(
-                    llm=graph_config.tooling.primary_llm,
-                    prompt=create_question_prompt(
-                        decision_system_prompt,
-                        reasoning_prompt,
-                        uploaded_image_context=uploaded_image_context,
-                    ),
-                    event_name="basic_response",
-                    writer=writer,
-                    agent_answer_level=0,
-                    agent_answer_question_num=0,
-                    agent_answer_type="agent_level_answer",
-                    timeout_override=TF_DR_TIMEOUT_LONG,
-                    answer_piece=StreamingType.REASONING_DELTA.value,
-                    ind=current_step_nr,
-                    # max_tokens=None,
-                ),
-            )
-
-            write_custom_event(
-                current_step_nr,
-                SectionEnd(),
-                writer,
-            )
-
-            current_step_nr += 1
-
-            reasoning_result = cast(str, merge_content(*reasoning_tokens))
-
-            if SUFFICIENT_INFORMATION_STRING in reasoning_result:
-                return OrchestrationUpdate(
-                    tools_used=[DRPath.CLOSER.value],
-                    current_step_nr=current_step_nr,
-                    query_list=[],
-                    iteration_nr=iteration_nr,
-                    log_messages=[
-                        get_langgraph_node_log_string(
-                            graph_component="main",
-                            node_name="orchestrator",
-                            node_start_time=node_start_time,
-                        )
-                    ],
-                    plan_of_record=plan_of_record,
-                    remaining_time_budget=remaining_time_budget,
-                    iteration_instructions=[
-                        IterationInstructions(
-                            iteration_nr=iteration_nr,
-                            plan=None,
-                            reasoning=reasoning_result,
-                            purpose="",
-                        )
-                    ],
-                )
-
-        # for Thoughtful mode, we force a tool if requested an available
-        available_tools_for_decision = available_tools
-        force_use_tool = graph_config.tooling.force_use_tool
-        if iteration_nr == 1 and force_use_tool and force_use_tool.force_use:
-
-            forced_tool_name = force_use_tool.tool_name
-
-            available_tool_dict = {
-                available_tool.tool_object.name: available_tool
-                for _, available_tool in available_tools.items()
-                if available_tool.tool_object
-            }
-
-            if forced_tool_name in available_tool_dict.keys():
-                forced_tool = available_tool_dict[forced_tool_name]
-
-                available_tools_for_decision = {forced_tool.name: forced_tool}
-
-        base_decision_prompt = get_dr_prompt_orchestration_templates(
-            DRPromptPurpose.NEXT_STEP,
-            ResearchType.THOUGHTFUL,
-            entity_types_string=all_entity_types,
-            relationship_types_string=all_relationship_types,
-            available_tools=available_tools_for_decision,
-        )
-        decision_prompt = base_decision_prompt.build(
-            question=question,
-            chat_history_string=chat_history_string,
-            answer_history_string=answer_history_string,
-            iteration_nr=str(iteration_nr),
-            remaining_time_budget=str(remaining_time_budget),
-            reasoning_result=reasoning_result,
-            uploaded_context=uploaded_context,
-        )
-
-        if remaining_time_budget > 0:
-            try:
-                orchestrator_action = invoke_llm_json(
-                    llm=graph_config.tooling.primary_llm,
-                    prompt=create_question_prompt(
-                        decision_system_prompt,
-                        decision_prompt,
-                        uploaded_image_context=uploaded_image_context,
-                    ),
-                    schema=OrchestratorDecisonsNoPlan,
-                    timeout_override=TF_DR_TIMEOUT_SHORT,
-                    # max_tokens=2500,
-                )
-                next_step = orchestrator_action.next_step
-                next_tool_name = next_step.tool
-                query_list = [q for q in (next_step.questions or [])]
-
-                tool_calls_string = create_tool_call_string(next_tool_name, query_list)
-
-            except Exception as e:
-                logger.error(f"Error in approach extraction: {e}")
-                raise e
-
-            if next_tool_name in available_tools.keys():
-                remaining_time_budget -= available_tools[next_tool_name].cost
-            else:
-                logger.warning(f"Tool {next_tool_name} not found in available tools")
-                remaining_time_budget -= 1.0
-
-        else:
-            reasoning_result = "Time to wrap up."
-            next_tool_name = DRPath.CLOSER.value
-
-    elif research_type == ResearchType.DEEP:
-        if iteration_nr == 1 and not plan_of_record:
-            # by default, we start a new iteration, but if there is a feedback request,
-            # we start a new iteration 0 again (set a bit later)
-
-            remaining_time_budget = DR_TIME_BUDGET_BY_TYPE[ResearchType.DEEP]
-
-            base_plan_prompt = get_dr_prompt_orchestration_templates(
-                DRPromptPurpose.PLAN,
-                ResearchType.DEEP,
-                entity_types_string=all_entity_types,
-                relationship_types_string=all_relationship_types,
-                available_tools=available_tools,
-            )
-            plan_generation_prompt = base_plan_prompt.build(
-                question=prompt_question,
-                chat_history_string=chat_history_string,
-                uploaded_context=uploaded_context,
-            )
-
-            try:
-                plan_of_record = invoke_llm_json(
-                    llm=graph_config.tooling.primary_llm,
-                    prompt=create_question_prompt(
-                        decision_system_prompt,
-                        plan_generation_prompt,
-                        uploaded_image_context=uploaded_image_context,
-                    ),
-                    schema=OrchestrationPlan,
-                    timeout_override=TF_DR_TIMEOUT_SHORT,
-                    # max_tokens=3000,
-                )
-            except Exception as e:
-                logger.error(f"Error in plan generation: {e}")
-                raise
-
-            write_custom_event(
-                current_step_nr,
-                ReasoningStart(),
-                writer,
-            )
-
-            start_time = datetime.now()
-
-            repeat_plan_prompt = REPEAT_PROMPT.build(
-                original_information=f"{HIGH_LEVEL_PLAN_PREFIX}\n\n {plan_of_record.plan}"
-            )
-
-            _, _, _ = run_with_timeout(
-                TF_DR_TIMEOUT_LONG,
-                lambda: stream_llm_answer(
-                    llm=graph_config.tooling.primary_llm,
-                    prompt=repeat_plan_prompt,
-                    event_name="basic_response",
-                    writer=writer,
-                    agent_answer_level=0,
-                    agent_answer_question_num=0,
-                    agent_answer_type="agent_level_answer",
-                    timeout_override=TF_DR_TIMEOUT_LONG,
-                    answer_piece=StreamingType.REASONING_DELTA.value,
-                    ind=current_step_nr,
-                ),
-            )
-
-            end_time = datetime.now()
-            logger.debug(f"Time taken for plan streaming: {end_time - start_time}")
-
-            write_custom_event(
-                current_step_nr,
-                SectionEnd(),
-                writer,
-            )
-            current_step_nr += 1
-
-        if not plan_of_record:
-            raise ValueError(
-                "Plan information is required for iterative decision making"
-            )
-
-        base_decision_prompt = get_dr_prompt_orchestration_templates(
-            DRPromptPurpose.NEXT_STEP,
-            ResearchType.DEEP,
-            entity_types_string=all_entity_types,
-            relationship_types_string=all_relationship_types,
-            available_tools=available_tools,
-        )
-        decision_prompt = base_decision_prompt.build(
-            answer_history_string=answer_history_string,
-            question_history_string=question_history_string,
-            question=prompt_question,
-            iteration_nr=str(iteration_nr),
-            current_plan_of_record_string=plan_of_record.plan,
-            chat_history_string=chat_history_string,
-            remaining_time_budget=str(remaining_time_budget),
-            gaps=gaps_str,
-            uploaded_context=uploaded_context,
-        )
-
-        if remaining_time_budget > 0:
-            try:
-                orchestrator_action = invoke_llm_json(
-                    llm=graph_config.tooling.primary_llm,
-                    prompt=create_question_prompt(
-                        decision_system_prompt,
-                        decision_prompt,
-                        uploaded_image_context=uploaded_image_context,
-                    ),
-                    schema=OrchestratorDecisonsNoPlan,
-                    timeout_override=TF_DR_TIMEOUT_LONG,
-                    # max_tokens=1500,
-                )
-                next_step = orchestrator_action.next_step
-                next_tool_name = next_step.tool
-
-                query_list = [q for q in (next_step.questions or [])]
-                reasoning_result = orchestrator_action.reasoning
-
-                tool_calls_string = create_tool_call_string(next_tool_name, query_list)
-            except Exception as e:
-                logger.error(f"Error in approach extraction: {e}")
-                raise e
-
-            if next_tool_name in available_tools.keys():
-                remaining_time_budget -= available_tools[next_tool_name].cost
-            else:
-                logger.warning(f"Tool {next_tool_name} not found in available tools")
-                remaining_time_budget -= 1.0
-        else:
-            reasoning_result = "Time to wrap up."
-            next_tool_name = DRPath.CLOSER.value
-
-        write_custom_event(
-            current_step_nr,
-            ReasoningStart(),
-            writer,
-        )
-
-        repeat_reasoning_prompt = REPEAT_PROMPT.build(
-            original_information=reasoning_result
-        )
-
-        _, _, _ = run_with_timeout(
-            TF_DR_TIMEOUT_LONG,
-            lambda: stream_llm_answer(
-                llm=graph_config.tooling.primary_llm,
-                prompt=repeat_reasoning_prompt,
-                event_name="basic_response",
-                writer=writer,
-                agent_answer_level=0,
-                agent_answer_question_num=0,
-                agent_answer_type="agent_level_answer",
-                timeout_override=TF_DR_TIMEOUT_LONG,
-                answer_piece=StreamingType.REASONING_DELTA.value,
-                ind=current_step_nr,
-                # max_tokens=None,
-            ),
-        )
-
-        write_custom_event(
-            current_step_nr,
-            SectionEnd(),
-            writer,
-        )
-
-        current_step_nr += 1
-
-    else:
-        raise NotImplementedError(f"Research type {research_type} is not implemented.")
-
-    base_next_step_purpose_prompt = get_dr_prompt_orchestration_templates(
-        DRPromptPurpose.NEXT_STEP_PURPOSE,
-        ResearchType.DEEP,
-        entity_types_string=all_entity_types,
-        relationship_types_string=all_relationship_types,
-        available_tools=available_tools,
-    )
-    orchestration_next_step_purpose_prompt = base_next_step_purpose_prompt.build(
-        question=prompt_question,
-        reasoning_result=reasoning_result,
-        tool_calls=tool_calls_string,
-    )
-
-    purpose_tokens: list[str] = [""]
-    purpose = ""
-
-    if research_type in [ResearchType.THOUGHTFUL, ResearchType.DEEP]:
-
-        try:
-
-            write_custom_event(
-                current_step_nr,
-                ReasoningStart(),
-                writer,
-            )
-
-            purpose_tokens, _, _ = run_with_timeout(
-                TF_DR_TIMEOUT_LONG,
-                lambda: stream_llm_answer(
-                    llm=graph_config.tooling.primary_llm,
-                    prompt=create_question_prompt(
-                        decision_system_prompt,
-                        orchestration_next_step_purpose_prompt,
-                        uploaded_image_context=uploaded_image_context,
-                    ),
-                    event_name="basic_response",
-                    writer=writer,
-                    agent_answer_level=0,
-                    agent_answer_question_num=0,
-                    agent_answer_type="agent_level_answer",
-                    timeout_override=TF_DR_TIMEOUT_LONG,
-                    answer_piece=StreamingType.REASONING_DELTA.value,
-                    ind=current_step_nr,
-                    # max_tokens=None,
-                ),
-            )
-
-            write_custom_event(
-                current_step_nr,
-                SectionEnd(),
-                writer,
-            )
-
-            current_step_nr += 1
-
-        except Exception as e:
-            logger.error("Error in orchestration next step purpose.")
-            raise e
-
-        purpose = cast(str, merge_content(*purpose_tokens))
-
-    elif research_type == ResearchType.FAST:
-        purpose = f"Answering the question using the {next_tool_name}"
-
-    if not next_tool_name:
-        raise ValueError("The next step has not been defined. This should not happen.")
-
-    return OrchestrationUpdate(
-        tools_used=[next_tool_name],
-        query_list=query_list or [],
-        iteration_nr=iteration_nr,
-        current_step_nr=current_step_nr,
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="main",
-                node_name="orchestrator",
-                node_start_time=node_start_time,
-            )
-        ],
-        plan_of_record=plan_of_record,
-        remaining_time_budget=remaining_time_budget,
-        iteration_instructions=[
-            IterationInstructions(
-                iteration_nr=iteration_nr,
-                plan=plan_of_record.plan if plan_of_record else None,
-                reasoning=reasoning_result,
-                purpose=purpose,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/nodes/dr_a2_closer.py

@@ -1,423 +0,0 @@
-import re
-from datetime import datetime
-from typing import cast
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-from sqlalchemy.orm import Session
-
-from onyx.agents.agent_search.dr.constants import MAX_CHAT_HISTORY_MESSAGES
-from onyx.agents.agent_search.dr.constants import MAX_NUM_CLOSER_SUGGESTIONS
-from onyx.agents.agent_search.dr.enums import DRPath
-from onyx.agents.agent_search.dr.enums import ResearchAnswerPurpose
-from onyx.agents.agent_search.dr.enums import ResearchType
-from onyx.agents.agent_search.dr.models import AggregatedDRContext
-from onyx.agents.agent_search.dr.models import TestInfoCompleteResponse
-from onyx.agents.agent_search.dr.states import FinalUpdate
-from onyx.agents.agent_search.dr.states import MainState
-from onyx.agents.agent_search.dr.states import OrchestrationUpdate
-from onyx.agents.agent_search.dr.sub_agents.image_generation.models import (
-    GeneratedImageFullResult,
-)
-from onyx.agents.agent_search.dr.utils import aggregate_context
-from onyx.agents.agent_search.dr.utils import convert_inference_sections_to_search_docs
-from onyx.agents.agent_search.dr.utils import get_chat_history_string
-from onyx.agents.agent_search.dr.utils import get_prompt_question
-from onyx.agents.agent_search.dr.utils import parse_plan_to_dict
-from onyx.agents.agent_search.models import GraphConfig
-from onyx.agents.agent_search.shared_graph_utils.llm import invoke_llm_json
-from onyx.agents.agent_search.shared_graph_utils.llm import stream_llm_answer
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.agents.agent_search.utils import create_question_prompt
-from onyx.chat.chat_utils import llm_doc_from_inference_section
-from onyx.configs.agent_configs import TF_DR_TIMEOUT_LONG
-from onyx.context.search.models import InferenceSection
-from onyx.db.chat import create_search_doc_from_inference_section
-from onyx.db.chat import update_db_session_with_messages
-from onyx.db.models import ChatMessage__SearchDoc
-from onyx.db.models import ResearchAgentIteration
-from onyx.db.models import ResearchAgentIterationSubStep
-from onyx.db.models import SearchDoc as DbSearchDoc
-from onyx.llm.utils import check_number_of_tokens
-from onyx.prompts.chat_prompts import PROJECT_INSTRUCTIONS_SEPARATOR
-from onyx.prompts.dr_prompts import FINAL_ANSWER_PROMPT_W_SUB_ANSWERS
-from onyx.prompts.dr_prompts import FINAL_ANSWER_PROMPT_WITHOUT_SUB_ANSWERS
-from onyx.prompts.dr_prompts import TEST_INFO_COMPLETE_PROMPT
-from onyx.server.query_and_chat.streaming_models import CitationDelta
-from onyx.server.query_and_chat.streaming_models import CitationStart
-from onyx.server.query_and_chat.streaming_models import MessageStart
-from onyx.server.query_and_chat.streaming_models import SectionEnd
-from onyx.server.query_and_chat.streaming_models import StreamingType
-from onyx.utils.logger import setup_logger
-from onyx.utils.threadpool_concurrency import run_with_timeout
-
-logger = setup_logger()
-
-
-def extract_citation_numbers(text: str) -> list[int]:
-    """
-    Extract all citation numbers from text in the format [[<number>]] or [[<number_1>, <number_2>, ...]].
-    Returns a list of all unique citation numbers found.
-    """
-    # Pattern to match [[number]] or [[number1, number2, ...]]
-    pattern = r"\[\[(\d+(?:,\s*\d+)*)\]\]"
-    matches = re.findall(pattern, text)
-
-    cited_numbers = []
-    for match in matches:
-        # Split by comma and extract all numbers
-        numbers = [int(num.strip()) for num in match.split(",")]
-        cited_numbers.extend(numbers)
-
-    return list(set(cited_numbers))  # Return unique numbers
-
-
-def replace_citation_with_link(match: re.Match[str], docs: list[DbSearchDoc]) -> str:
-    citation_content = match.group(1)  # e.g., "3" or "3, 5, 7"
-    numbers = [int(num.strip()) for num in citation_content.split(",")]
-
-    # For multiple citations like [[3, 5, 7]], create separate linked citations
-    linked_citations = []
-    for num in numbers:
-        if num - 1 < len(docs):  # Check bounds
-            link = docs[num - 1].link or ""
-            linked_citations.append(f"[[{num}]]({link})")
-        else:
-            linked_citations.append(f"[[{num}]]")  # No link if out of bounds
-
-    return "".join(linked_citations)
-
-
-def insert_chat_message_search_doc_pair(
-    message_id: int, search_doc_ids: list[int], db_session: Session
-) -> None:
-    """
-    Insert a pair of message_id and search_doc_id into the chat_message__search_doc table.
-
-    Args:
-        message_id: The ID of the chat message
-        search_doc_id: The ID of the search document
-        db_session: The database session
-    """
-    for search_doc_id in search_doc_ids:
-        chat_message_search_doc = ChatMessage__SearchDoc(
-            chat_message_id=message_id, search_doc_id=search_doc_id
-        )
-        db_session.add(chat_message_search_doc)
-
-
-def save_iteration(
-    state: MainState,
-    graph_config: GraphConfig,
-    aggregated_context: AggregatedDRContext,
-    final_answer: str,
-    all_cited_documents: list[InferenceSection],
-    is_internet_marker_dict: dict[str, bool],
-) -> None:
-    db_session = graph_config.persistence.db_session
-    message_id = graph_config.persistence.message_id
-    research_type = graph_config.behavior.research_type
-    db_session = graph_config.persistence.db_session
-
-    # first, insert the search_docs
-    search_docs = [
-        create_search_doc_from_inference_section(
-            inference_section=inference_section,
-            is_internet=is_internet_marker_dict.get(
-                inference_section.center_chunk.document_id, False
-            ),  # TODO: revisit
-            db_session=db_session,
-            commit=False,
-        )
-        for inference_section in all_cited_documents
-    ]
-
-    # then, map_search_docs to message
-    insert_chat_message_search_doc_pair(
-        message_id, [search_doc.id for search_doc in search_docs], db_session
-    )
-
-    # lastly, insert the citations
-    citation_dict: dict[int, int] = {}
-    cited_doc_nrs = extract_citation_numbers(final_answer)
-    for cited_doc_nr in cited_doc_nrs:
-        citation_dict[cited_doc_nr] = search_docs[cited_doc_nr - 1].id
-
-    # TODO: generate plan as dict in the first place
-    plan_of_record = state.plan_of_record.plan if state.plan_of_record else ""
-    plan_of_record_dict = parse_plan_to_dict(plan_of_record)
-
-    # Update the chat message and its parent message in database
-    update_db_session_with_messages(
-        db_session=db_session,
-        chat_message_id=message_id,
-        chat_session_id=graph_config.persistence.chat_session_id,
-        is_agentic=graph_config.behavior.use_agentic_search,
-        message=final_answer,
-        citations=citation_dict,
-        research_type=research_type,
-        research_plan=plan_of_record_dict,
-        final_documents=search_docs,
-        update_parent_message=True,
-        research_answer_purpose=ResearchAnswerPurpose.ANSWER,
-    )
-
-    for iteration_preparation in state.iteration_instructions:
-        research_agent_iteration_step = ResearchAgentIteration(
-            primary_question_id=message_id,
-            reasoning=iteration_preparation.reasoning,
-            purpose=iteration_preparation.purpose,
-            iteration_nr=iteration_preparation.iteration_nr,
-        )
-        db_session.add(research_agent_iteration_step)
-
-    for iteration_answer in aggregated_context.global_iteration_responses:
-
-        retrieved_search_docs = convert_inference_sections_to_search_docs(
-            list(iteration_answer.cited_documents.values())
-        )
-
-        # Convert SavedSearchDoc objects to JSON-serializable format
-        serialized_search_docs = [doc.model_dump() for doc in retrieved_search_docs]
-
-        research_agent_iteration_sub_step = ResearchAgentIterationSubStep(
-            primary_question_id=message_id,
-            iteration_nr=iteration_answer.iteration_nr,
-            iteration_sub_step_nr=iteration_answer.parallelization_nr,
-            sub_step_instructions=iteration_answer.question,
-            sub_step_tool_id=iteration_answer.tool_id,
-            sub_answer=iteration_answer.answer,
-            reasoning=iteration_answer.reasoning,
-            claims=iteration_answer.claims,
-            cited_doc_results=serialized_search_docs,
-            generated_images=(
-                GeneratedImageFullResult(images=iteration_answer.generated_images)
-                if iteration_answer.generated_images
-                else None
-            ),
-            additional_data=iteration_answer.additional_data,
-            queries=iteration_answer.queries,
-        )
-        db_session.add(research_agent_iteration_sub_step)
-
-    db_session.commit()
-
-
-def closer(
-    state: MainState, config: RunnableConfig, writer: StreamWriter = lambda _: None
-) -> FinalUpdate | OrchestrationUpdate:
-    """
-    LangGraph node to close the DR process and finalize the answer.
-    """
-
-    node_start_time = datetime.now()
-    # TODO: generate final answer using all the previous steps
-    # (right now, answers from each step are concatenated onto each other)
-    # Also, add missing fields once usage in UI is clear.
-
-    current_step_nr = state.current_step_nr
-
-    graph_config = cast(GraphConfig, config["metadata"]["config"])
-    base_question = state.original_question
-    if not base_question:
-        raise ValueError("Question is required for closer")
-
-    research_type = graph_config.behavior.research_type
-
-    assistant_system_prompt: str = state.assistant_system_prompt or ""
-    assistant_task_prompt = state.assistant_task_prompt
-
-    uploaded_context = state.uploaded_test_context or ""
-
-    clarification = state.clarification
-    prompt_question = get_prompt_question(base_question, clarification)
-
-    chat_history_string = (
-        get_chat_history_string(
-            graph_config.inputs.prompt_builder.message_history,
-            MAX_CHAT_HISTORY_MESSAGES,
-        )
-        or "(No chat history yet available)"
-    )
-
-    aggregated_context_w_docs = aggregate_context(
-        state.iteration_responses, include_documents=True
-    )
-
-    aggregated_context_wo_docs = aggregate_context(
-        state.iteration_responses, include_documents=False
-    )
-
-    iteration_responses_w_docs_string = aggregated_context_w_docs.context
-    iteration_responses_wo_docs_string = aggregated_context_wo_docs.context
-    all_cited_documents = aggregated_context_w_docs.cited_documents
-
-    num_closer_suggestions = state.num_closer_suggestions
-
-    if (
-        num_closer_suggestions < MAX_NUM_CLOSER_SUGGESTIONS
-        and research_type == ResearchType.DEEP
-    ):
-        test_info_complete_prompt = TEST_INFO_COMPLETE_PROMPT.build(
-            base_question=prompt_question,
-            questions_answers_claims=iteration_responses_wo_docs_string,
-            chat_history_string=chat_history_string,
-            high_level_plan=(
-                state.plan_of_record.plan
-                if state.plan_of_record
-                else "No plan available"
-            ),
-        )
-
-        test_info_complete_json = invoke_llm_json(
-            llm=graph_config.tooling.primary_llm,
-            prompt=create_question_prompt(
-                assistant_system_prompt,
-                test_info_complete_prompt + (assistant_task_prompt or ""),
-            ),
-            schema=TestInfoCompleteResponse,
-            timeout_override=TF_DR_TIMEOUT_LONG,
-            # max_tokens=1000,
-        )
-
-        if test_info_complete_json.complete:
-            pass
-
-        else:
-            return OrchestrationUpdate(
-                tools_used=[DRPath.ORCHESTRATOR.value],
-                query_list=[],
-                log_messages=[
-                    get_langgraph_node_log_string(
-                        graph_component="main",
-                        node_name="closer",
-                        node_start_time=node_start_time,
-                    )
-                ],
-                gaps=test_info_complete_json.gaps,
-                num_closer_suggestions=num_closer_suggestions + 1,
-            )
-
-    retrieved_search_docs = convert_inference_sections_to_search_docs(
-        all_cited_documents
-    )
-
-    write_custom_event(
-        current_step_nr,
-        MessageStart(
-            content="",
-            final_documents=retrieved_search_docs,
-        ),
-        writer,
-    )
-
-    if research_type in [ResearchType.THOUGHTFUL, ResearchType.FAST]:
-        final_answer_base_prompt = FINAL_ANSWER_PROMPT_WITHOUT_SUB_ANSWERS
-    elif research_type == ResearchType.DEEP:
-        final_answer_base_prompt = FINAL_ANSWER_PROMPT_W_SUB_ANSWERS
-    else:
-        raise ValueError(f"Invalid research type: {research_type}")
-
-    estimated_final_answer_prompt_tokens = check_number_of_tokens(
-        final_answer_base_prompt.build(
-            base_question=prompt_question,
-            iteration_responses_string=iteration_responses_w_docs_string,
-            chat_history_string=chat_history_string,
-            uploaded_context=uploaded_context,
-        )
-    )
-
-    # for DR, rely only on sub-answers and claims to save tokens if context is too long
-    # TODO: consider compression step for Thoughtful mode if context is too long.
-    # Should generally not be the case though.
-
-    max_allowed_input_tokens = graph_config.tooling.primary_llm.config.max_input_tokens
-
-    if (
-        estimated_final_answer_prompt_tokens > 0.8 * max_allowed_input_tokens
-        and research_type == ResearchType.DEEP
-    ):
-        iteration_responses_string = iteration_responses_wo_docs_string
-    else:
-        iteration_responses_string = iteration_responses_w_docs_string
-
-    final_answer_prompt = final_answer_base_prompt.build(
-        base_question=prompt_question,
-        iteration_responses_string=iteration_responses_string,
-        chat_history_string=chat_history_string,
-        uploaded_context=uploaded_context,
-    )
-
-    if graph_config.inputs.project_instructions:
-        assistant_system_prompt = (
-            assistant_system_prompt
-            + PROJECT_INSTRUCTIONS_SEPARATOR
-            + (graph_config.inputs.project_instructions or "")
-        )
-
-    all_context_llmdocs = [
-        llm_doc_from_inference_section(inference_section)
-        for inference_section in all_cited_documents
-    ]
-
-    try:
-        streamed_output, _, citation_infos = run_with_timeout(
-            int(3 * TF_DR_TIMEOUT_LONG),
-            lambda: stream_llm_answer(
-                llm=graph_config.tooling.primary_llm,
-                prompt=create_question_prompt(
-                    assistant_system_prompt,
-                    final_answer_prompt + (assistant_task_prompt or ""),
-                ),
-                event_name="basic_response",
-                writer=writer,
-                agent_answer_level=0,
-                agent_answer_question_num=0,
-                agent_answer_type="agent_level_answer",
-                timeout_override=int(2 * TF_DR_TIMEOUT_LONG),
-                answer_piece=StreamingType.MESSAGE_DELTA.value,
-                ind=current_step_nr,
-                context_docs=all_context_llmdocs,
-                replace_citations=True,
-                # max_tokens=None,
-            ),
-        )
-
-        final_answer = "".join(streamed_output)
-    except Exception as e:
-        raise ValueError(f"Error in consolidate_research: {e}")
-
-    write_custom_event(current_step_nr, SectionEnd(), writer)
-
-    current_step_nr += 1
-
-    write_custom_event(current_step_nr, CitationStart(), writer)
-    write_custom_event(current_step_nr, CitationDelta(citations=citation_infos), writer)
-    write_custom_event(current_step_nr, SectionEnd(), writer)
-
-    current_step_nr += 1
-
-    # Log the research agent steps
-    # save_iteration(
-    #     state,
-    #     graph_config,
-    #     aggregated_context,
-    #     final_answer,
-    #     all_cited_documents,
-    #     is_internet_marker_dict,
-    # )
-
-    return FinalUpdate(
-        final_answer=final_answer,
-        all_cited_documents=all_cited_documents,
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="main",
-                node_name="closer",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/nodes/dr_a3_logger.py

@@ -1,248 +0,0 @@
-import re
-from datetime import datetime
-from typing import cast
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-from sqlalchemy.orm import Session
-
-from onyx.agents.agent_search.dr.enums import ResearchAnswerPurpose
-from onyx.agents.agent_search.dr.models import AggregatedDRContext
-from onyx.agents.agent_search.dr.states import LoggerUpdate
-from onyx.agents.agent_search.dr.states import MainState
-from onyx.agents.agent_search.dr.sub_agents.image_generation.models import (
-    GeneratedImageFullResult,
-)
-from onyx.agents.agent_search.dr.utils import aggregate_context
-from onyx.agents.agent_search.dr.utils import convert_inference_sections_to_search_docs
-from onyx.agents.agent_search.dr.utils import parse_plan_to_dict
-from onyx.agents.agent_search.models import GraphConfig
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.context.search.models import InferenceSection
-from onyx.db.chat import create_search_doc_from_inference_section
-from onyx.db.chat import update_db_session_with_messages
-from onyx.db.models import ChatMessage__SearchDoc
-from onyx.db.models import ResearchAgentIteration
-from onyx.db.models import ResearchAgentIterationSubStep
-from onyx.db.models import SearchDoc as DbSearchDoc
-from onyx.natural_language_processing.utils import get_tokenizer
-from onyx.server.query_and_chat.streaming_models import OverallStop
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-def _extract_citation_numbers(text: str) -> list[int]:
-    """
-    Extract all citation numbers from text in the format [[<number>]] or [[<number_1>, <number_2>, ...]].
-    Returns a list of all unique citation numbers found.
-    """
-    # Pattern to match [[number]] or [[number1, number2, ...]]
-    pattern = r"\[\[(\d+(?:,\s*\d+)*)\]\]"
-    matches = re.findall(pattern, text)
-
-    cited_numbers = []
-    for match in matches:
-        # Split by comma and extract all numbers
-        numbers = [int(num.strip()) for num in match.split(",")]
-        cited_numbers.extend(numbers)
-
-    return list(set(cited_numbers))  # Return unique numbers
-
-
-def replace_citation_with_link(match: re.Match[str], docs: list[DbSearchDoc]) -> str:
-    citation_content = match.group(1)  # e.g., "3" or "3, 5, 7"
-    numbers = [int(num.strip()) for num in citation_content.split(",")]
-
-    # For multiple citations like [[3, 5, 7]], create separate linked citations
-    linked_citations = []
-    for num in numbers:
-        if num - 1 < len(docs):  # Check bounds
-            link = docs[num - 1].link or ""
-            linked_citations.append(f"[[{num}]]({link})")
-        else:
-            linked_citations.append(f"[[{num}]]")  # No link if out of bounds
-
-    return "".join(linked_citations)
-
-
-def _insert_chat_message_search_doc_pair(
-    message_id: int, search_doc_ids: list[int], db_session: Session
-) -> None:
-    """
-    Insert a pair of message_id and search_doc_id into the chat_message__search_doc table.
-
-    Args:
-        message_id: The ID of the chat message
-        search_doc_id: The ID of the search document
-        db_session: The database session
-    """
-    for search_doc_id in search_doc_ids:
-        chat_message_search_doc = ChatMessage__SearchDoc(
-            chat_message_id=message_id, search_doc_id=search_doc_id
-        )
-        db_session.add(chat_message_search_doc)
-
-
-def save_iteration(
-    state: MainState,
-    graph_config: GraphConfig,
-    aggregated_context: AggregatedDRContext,
-    final_answer: str,
-    all_cited_documents: list[InferenceSection],
-    is_internet_marker_dict: dict[str, bool],
-    num_tokens: int,
-) -> None:
-    db_session = graph_config.persistence.db_session
-    message_id = graph_config.persistence.message_id
-    research_type = graph_config.behavior.research_type
-    db_session = graph_config.persistence.db_session
-
-    # first, insert the search_docs
-    search_docs = [
-        create_search_doc_from_inference_section(
-            inference_section=inference_section,
-            is_internet=is_internet_marker_dict.get(
-                inference_section.center_chunk.document_id, False
-            ),  # TODO: revisit
-            db_session=db_session,
-            commit=False,
-        )
-        for inference_section in all_cited_documents
-    ]
-
-    # then, map_search_docs to message
-    _insert_chat_message_search_doc_pair(
-        message_id, [search_doc.id for search_doc in search_docs], db_session
-    )
-
-    # lastly, insert the citations
-    citation_dict: dict[int, int] = {}
-    cited_doc_nrs = _extract_citation_numbers(final_answer)
-    if search_docs:
-        for cited_doc_nr in cited_doc_nrs:
-            citation_dict[cited_doc_nr] = search_docs[cited_doc_nr - 1].id
-
-    # TODO: generate plan as dict in the first place
-    plan_of_record = state.plan_of_record.plan if state.plan_of_record else ""
-    plan_of_record_dict = parse_plan_to_dict(plan_of_record)
-
-    # Update the chat message and its parent message in database
-    update_db_session_with_messages(
-        db_session=db_session,
-        chat_message_id=message_id,
-        chat_session_id=graph_config.persistence.chat_session_id,
-        is_agentic=graph_config.behavior.use_agentic_search,
-        message=final_answer,
-        citations=citation_dict,
-        research_type=research_type,
-        research_plan=plan_of_record_dict,
-        final_documents=search_docs,
-        update_parent_message=True,
-        research_answer_purpose=ResearchAnswerPurpose.ANSWER,
-        token_count=num_tokens,
-    )
-
-    for iteration_preparation in state.iteration_instructions:
-        research_agent_iteration_step = ResearchAgentIteration(
-            primary_question_id=message_id,
-            reasoning=iteration_preparation.reasoning,
-            purpose=iteration_preparation.purpose,
-            iteration_nr=iteration_preparation.iteration_nr,
-        )
-        db_session.add(research_agent_iteration_step)
-
-    for iteration_answer in aggregated_context.global_iteration_responses:
-
-        retrieved_search_docs = convert_inference_sections_to_search_docs(
-            list(iteration_answer.cited_documents.values())
-        )
-
-        # Convert SavedSearchDoc objects to JSON-serializable format
-        serialized_search_docs = [doc.model_dump() for doc in retrieved_search_docs]
-
-        research_agent_iteration_sub_step = ResearchAgentIterationSubStep(
-            primary_question_id=message_id,
-            iteration_nr=iteration_answer.iteration_nr,
-            iteration_sub_step_nr=iteration_answer.parallelization_nr,
-            sub_step_instructions=iteration_answer.question,
-            sub_step_tool_id=iteration_answer.tool_id,
-            sub_answer=iteration_answer.answer,
-            reasoning=iteration_answer.reasoning,
-            claims=iteration_answer.claims,
-            cited_doc_results=serialized_search_docs,
-            generated_images=(
-                GeneratedImageFullResult(images=iteration_answer.generated_images)
-                if iteration_answer.generated_images
-                else None
-            ),
-            additional_data=iteration_answer.additional_data,
-            queries=iteration_answer.queries,
-        )
-        db_session.add(research_agent_iteration_sub_step)
-
-    db_session.commit()
-
-
-def logging(
-    state: MainState, config: RunnableConfig, writer: StreamWriter = lambda _: None
-) -> LoggerUpdate:
-    """
-    LangGraph node to close the DR process and finalize the answer.
-    """
-
-    node_start_time = datetime.now()
-    # TODO: generate final answer using all the previous steps
-    # (right now, answers from each step are concatenated onto each other)
-    # Also, add missing fields once usage in UI is clear.
-
-    current_step_nr = state.current_step_nr
-
-    graph_config = cast(GraphConfig, config["metadata"]["config"])
-    base_question = state.original_question
-    if not base_question:
-        raise ValueError("Question is required for closer")
-
-    aggregated_context = aggregate_context(
-        state.iteration_responses, include_documents=True
-    )
-
-    all_cited_documents = aggregated_context.cited_documents
-
-    is_internet_marker_dict = aggregated_context.is_internet_marker_dict
-
-    final_answer = state.final_answer or ""
-    llm_provider = graph_config.tooling.primary_llm.config.model_provider
-    llm_model_name = graph_config.tooling.primary_llm.config.model_name
-
-    llm_tokenizer = get_tokenizer(
-        model_name=llm_model_name,
-        provider_type=llm_provider,
-    )
-    num_tokens = len(llm_tokenizer.encode(final_answer or ""))
-
-    write_custom_event(current_step_nr, OverallStop(), writer)
-
-    # Log the research agent steps
-    save_iteration(
-        state,
-        graph_config,
-        aggregated_context,
-        final_answer,
-        all_cited_documents,
-        is_internet_marker_dict,
-        num_tokens,
-    )
-
-    return LoggerUpdate(
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="main",
-                node_name="logger",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/process_llm_stream.py

@@ -1,132 +0,0 @@
-from collections.abc import Iterator
-from typing import cast
-
-from langchain_core.messages import AIMessageChunk
-from langchain_core.messages import BaseMessage
-from langgraph.types import StreamWriter
-from pydantic import BaseModel
-
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.chat.chat_utils import saved_search_docs_from_llm_docs
-from onyx.chat.models import AgentAnswerPiece
-from onyx.chat.models import CitationInfo
-from onyx.chat.models import LlmDoc
-from onyx.chat.models import OnyxAnswerPiece
-from onyx.chat.stream_processing.answer_response_handler import AnswerResponseHandler
-from onyx.chat.stream_processing.answer_response_handler import CitationResponseHandler
-from onyx.chat.stream_processing.answer_response_handler import (
-    PassThroughAnswerResponseHandler,
-)
-from onyx.chat.stream_processing.utils import map_document_id_order
-from onyx.context.search.models import InferenceSection
-from onyx.server.query_and_chat.streaming_models import CitationDelta
-from onyx.server.query_and_chat.streaming_models import CitationStart
-from onyx.server.query_and_chat.streaming_models import MessageDelta
-from onyx.server.query_and_chat.streaming_models import MessageStart
-from onyx.server.query_and_chat.streaming_models import SectionEnd
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-class BasicSearchProcessedStreamResults(BaseModel):
-    ai_message_chunk: AIMessageChunk = AIMessageChunk(content="")
-    full_answer: str | None = None
-    cited_references: list[InferenceSection] = []
-    retrieved_documents: list[LlmDoc] = []
-
-
-def process_llm_stream(
-    messages: Iterator[BaseMessage],
-    should_stream_answer: bool,
-    writer: StreamWriter,
-    ind: int,
-    search_results: list[LlmDoc] | None = None,
-    generate_final_answer: bool = False,
-    chat_message_id: str | None = None,
-) -> BasicSearchProcessedStreamResults:
-    tool_call_chunk = AIMessageChunk(content="")
-
-    if search_results:
-        answer_handler: AnswerResponseHandler = CitationResponseHandler(
-            context_docs=search_results,
-            doc_id_to_rank_map=map_document_id_order(search_results),
-        )
-    else:
-        answer_handler = PassThroughAnswerResponseHandler()
-
-    full_answer = ""
-    start_final_answer_streaming_set = False
-    # Accumulate citation infos if handler emits them
-    collected_citation_infos: list[CitationInfo] = []
-
-    # This stream will be the llm answer if no tool is chosen. When a tool is chosen,
-    # the stream will contain AIMessageChunks with tool call information.
-    for message in messages:
-
-        answer_piece = message.content
-        if not isinstance(answer_piece, str):
-            # this is only used for logging, so fine to
-            # just add the string representation
-            answer_piece = str(answer_piece)
-        full_answer += answer_piece
-
-        if isinstance(message, AIMessageChunk) and (
-            message.tool_call_chunks or message.tool_calls
-        ):
-            tool_call_chunk += message  # type: ignore
-        elif should_stream_answer:
-            for response_part in answer_handler.handle_response_part(message):
-
-                # only stream out answer parts
-                if (
-                    isinstance(response_part, (OnyxAnswerPiece, AgentAnswerPiece))
-                    and generate_final_answer
-                    and response_part.answer_piece
-                ):
-                    if chat_message_id is None:
-                        raise ValueError(
-                            "chat_message_id is required when generating final answer"
-                        )
-
-                    if not start_final_answer_streaming_set:
-                        # Convert LlmDocs to SavedSearchDocs
-                        saved_search_docs = saved_search_docs_from_llm_docs(
-                            search_results
-                        )
-                        write_custom_event(
-                            ind,
-                            MessageStart(content="", final_documents=saved_search_docs),
-                            writer,
-                        )
-                        start_final_answer_streaming_set = True
-
-                    write_custom_event(
-                        ind,
-                        MessageDelta(content=response_part.answer_piece),
-                        writer,
-                    )
-                # collect citation info objects
-                elif isinstance(response_part, CitationInfo):
-                    collected_citation_infos.append(response_part)
-
-    if generate_final_answer and start_final_answer_streaming_set:
-        # start_final_answer_streaming_set is only set if the answer is verbal and not a tool call
-        write_custom_event(
-            ind,
-            SectionEnd(),
-            writer,
-        )
-
-        # Emit citations section if any were collected
-        if collected_citation_infos:
-            write_custom_event(ind, CitationStart(), writer)
-            write_custom_event(
-                ind, CitationDelta(citations=collected_citation_infos), writer
-            )
-            write_custom_event(ind, SectionEnd(), writer)
-
-    logger.debug(f"Full answer: {full_answer}")
-    return BasicSearchProcessedStreamResults(
-        ai_message_chunk=cast(AIMessageChunk, tool_call_chunk), full_answer=full_answer
-    )

backend/onyx/agents/agent_search/dr/states.py

@@ -1,82 +0,0 @@
-from operator import add
-from typing import Annotated
-from typing import Any
-from typing import TypedDict
-
-from pydantic import BaseModel
-
-from onyx.agents.agent_search.core_state import CoreState
-from onyx.agents.agent_search.dr.models import IterationAnswer
-from onyx.agents.agent_search.dr.models import IterationInstructions
-from onyx.agents.agent_search.dr.models import OrchestrationClarificationInfo
-from onyx.agents.agent_search.dr.models import OrchestrationPlan
-from onyx.agents.agent_search.dr.models import OrchestratorTool
-from onyx.context.search.models import InferenceSection
-from onyx.db.connector import DocumentSource
-
-### States ###
-
-
-class LoggerUpdate(BaseModel):
-    log_messages: Annotated[list[str], add] = []
-
-
-class OrchestrationUpdate(LoggerUpdate):
-    tools_used: Annotated[list[str], add] = []
-    query_list: list[str] = []
-    iteration_nr: int = 0
-    current_step_nr: int = 1
-    plan_of_record: OrchestrationPlan | None = None  # None for Thoughtful
-    remaining_time_budget: float = 2.0  # set by default to about 2 searches
-    num_closer_suggestions: int = 0  # how many times the closer was suggested
-    gaps: list[str] = (
-        []
-    )  # gaps that may be identified by the closer before being able to answer the question.
-    iteration_instructions: Annotated[list[IterationInstructions], add] = []
-
-
-class OrchestrationSetup(OrchestrationUpdate):
-    original_question: str | None = None
-    chat_history_string: str | None = None
-    clarification: OrchestrationClarificationInfo | None = None
-    available_tools: dict[str, OrchestratorTool] | None = None
-    num_closer_suggestions: int = 0  # how many times the closer was suggested
-
-    active_source_types: list[DocumentSource] | None = None
-    active_source_types_descriptions: str | None = None
-    assistant_system_prompt: str | None = None
-    assistant_task_prompt: str | None = None
-    uploaded_test_context: str | None = None
-    uploaded_image_context: list[dict[str, Any]] | None = None
-
-
-class AnswerUpdate(LoggerUpdate):
-    iteration_responses: Annotated[list[IterationAnswer], add] = []
-
-
-class FinalUpdate(LoggerUpdate):
-    final_answer: str | None = None
-    all_cited_documents: list[InferenceSection] = []
-
-
-## Graph Input State
-class MainInput(CoreState):
-    pass
-
-
-## Graph State
-class MainState(
-    # This includes the core state
-    MainInput,
-    OrchestrationSetup,
-    AnswerUpdate,
-    FinalUpdate,
-):
-    pass
-
-
-## Graph Output State
-class MainOutput(TypedDict):
-    log_messages: list[str]
-    final_answer: str | None
-    all_cited_documents: list[InferenceSection]

backend/onyx/agents/agent_search/dr/sub_agents/basic_search/dr_basic_search_1_branch.py

@@ -1,47 +0,0 @@
-from datetime import datetime
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.states import LoggerUpdate
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentInput
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.server.query_and_chat.streaming_models import SearchToolStart
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-def basic_search_branch(
-    state: SubAgentInput, config: RunnableConfig, writer: StreamWriter = lambda _: None
-) -> LoggerUpdate:
-    """
-    LangGraph node to perform a standard search as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-    iteration_nr = state.iteration_nr
-    current_step_nr = state.current_step_nr
-
-    logger.debug(f"Search start for Basic Search {iteration_nr} at {datetime.now()}")
-
-    write_custom_event(
-        current_step_nr,
-        SearchToolStart(
-            is_internet_search=False,
-        ),
-        writer,
-    )
-
-    return LoggerUpdate(
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="basic_search",
-                node_name="branching",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/sub_agents/basic_search/dr_basic_search_2_act.py

@@ -1,286 +0,0 @@
-import re
-from datetime import datetime
-from typing import cast
-from uuid import UUID
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.enums import ResearchType
-from onyx.agents.agent_search.dr.models import BaseSearchProcessingResponse
-from onyx.agents.agent_search.dr.models import IterationAnswer
-from onyx.agents.agent_search.dr.models import SearchAnswer
-from onyx.agents.agent_search.dr.sub_agents.states import BranchInput
-from onyx.agents.agent_search.dr.sub_agents.states import BranchUpdate
-from onyx.agents.agent_search.dr.utils import convert_inference_sections_to_search_docs
-from onyx.agents.agent_search.dr.utils import extract_document_citations
-from onyx.agents.agent_search.kb_search.graph_utils import build_document_context
-from onyx.agents.agent_search.models import GraphConfig
-from onyx.agents.agent_search.shared_graph_utils.llm import invoke_llm_json
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.agents.agent_search.utils import create_question_prompt
-from onyx.chat.models import LlmDoc
-from onyx.configs.agent_configs import TF_DR_TIMEOUT_LONG
-from onyx.configs.agent_configs import TF_DR_TIMEOUT_SHORT
-from onyx.context.search.models import InferenceSection
-from onyx.db.connector import DocumentSource
-from onyx.db.engine.sql_engine import get_session_with_current_tenant
-from onyx.prompts.dr_prompts import BASE_SEARCH_PROCESSING_PROMPT
-from onyx.prompts.dr_prompts import INTERNAL_SEARCH_PROMPTS
-from onyx.secondary_llm_flows.source_filter import strings_to_document_sources
-from onyx.server.query_and_chat.streaming_models import SearchToolDelta
-from onyx.tools.models import SearchToolOverrideKwargs
-from onyx.tools.tool_implementations.search.search_tool import (
-    SEARCH_RESPONSE_SUMMARY_ID,
-)
-from onyx.tools.tool_implementations.search.search_tool import SearchResponseSummary
-from onyx.tools.tool_implementations.search.search_tool import SearchTool
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-def basic_search(
-    state: BranchInput,
-    config: RunnableConfig,
-    writer: StreamWriter = lambda _: None,
-) -> BranchUpdate:
-    """
-    LangGraph node to perform a standard search as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-    iteration_nr = state.iteration_nr
-    parallelization_nr = state.parallelization_nr
-    current_step_nr = state.current_step_nr
-    assistant_system_prompt = state.assistant_system_prompt
-    assistant_task_prompt = state.assistant_task_prompt
-
-    branch_query = state.branch_question
-    if not branch_query:
-        raise ValueError("branch_query is not set")
-
-    graph_config = cast(GraphConfig, config["metadata"]["config"])
-    base_question = graph_config.inputs.prompt_builder.raw_user_query
-    research_type = graph_config.behavior.research_type
-
-    if not state.available_tools:
-        raise ValueError("available_tools is not set")
-
-    elif len(state.tools_used) == 0:
-        raise ValueError("tools_used is empty")
-
-    search_tool_info = state.available_tools[state.tools_used[-1]]
-    search_tool = cast(SearchTool, search_tool_info.tool_object)
-    force_use_tool = graph_config.tooling.force_use_tool
-
-    # sanity check
-    if search_tool != graph_config.tooling.search_tool:
-        raise ValueError("search_tool does not match the configured search tool")
-
-    # rewrite query and identify source types
-    active_source_types_str = ", ".join(
-        [source.value for source in state.active_source_types or []]
-    )
-
-    base_search_processing_prompt = BASE_SEARCH_PROCESSING_PROMPT.build(
-        active_source_types_str=active_source_types_str,
-        branch_query=branch_query,
-        current_time=datetime.now().strftime("%Y-%m-%d %H:%M"),
-    )
-
-    try:
-        search_processing = invoke_llm_json(
-            llm=graph_config.tooling.primary_llm,
-            prompt=create_question_prompt(
-                assistant_system_prompt, base_search_processing_prompt
-            ),
-            schema=BaseSearchProcessingResponse,
-            timeout_override=TF_DR_TIMEOUT_SHORT,
-            # max_tokens=100,
-        )
-    except Exception as e:
-        logger.error(f"Could not process query: {e}")
-        raise e
-
-    rewritten_query = search_processing.rewritten_query
-
-    # give back the query so we can render it in the UI
-    write_custom_event(
-        current_step_nr,
-        SearchToolDelta(
-            queries=[rewritten_query],
-            documents=[],
-        ),
-        writer,
-    )
-
-    implied_start_date = search_processing.time_filter
-
-    # Validate time_filter format if it exists
-    implied_time_filter = None
-    if implied_start_date:
-
-        # Check if time_filter is in YYYY-MM-DD format
-        date_pattern = r"^\d{4}-\d{2}-\d{2}$"
-        if re.match(date_pattern, implied_start_date):
-            implied_time_filter = datetime.strptime(implied_start_date, "%Y-%m-%d")
-
-    specified_source_types: list[DocumentSource] | None = (
-        strings_to_document_sources(search_processing.specified_source_types)
-        if search_processing.specified_source_types
-        else None
-    )
-
-    if specified_source_types is not None and len(specified_source_types) == 0:
-        specified_source_types = None
-
-    logger.debug(
-        f"Search start for Standard Search {iteration_nr}.{parallelization_nr} at {datetime.now()}"
-    )
-
-    retrieved_docs: list[InferenceSection] = []
-    callback_container: list[list[InferenceSection]] = []
-
-    user_file_ids: list[UUID] | None = None
-    project_id: int | None = None
-    if force_use_tool.override_kwargs and isinstance(
-        force_use_tool.override_kwargs, SearchToolOverrideKwargs
-    ):
-        override_kwargs = force_use_tool.override_kwargs
-        user_file_ids = override_kwargs.user_file_ids
-        project_id = override_kwargs.project_id
-
-    # new db session to avoid concurrency issues
-    with get_session_with_current_tenant() as search_db_session:
-        for tool_response in search_tool.run(
-            query=rewritten_query,
-            document_sources=specified_source_types,
-            time_filter=implied_time_filter,
-            override_kwargs=SearchToolOverrideKwargs(
-                force_no_rerank=True,
-                alternate_db_session=search_db_session,
-                retrieved_sections_callback=callback_container.append,
-                skip_query_analysis=True,
-                original_query=rewritten_query,
-                user_file_ids=user_file_ids,
-                project_id=project_id,
-            ),
-        ):
-            # get retrieved docs to send to the rest of the graph
-            if tool_response.id == SEARCH_RESPONSE_SUMMARY_ID:
-                response = cast(SearchResponseSummary, tool_response.response)
-                retrieved_docs = response.top_sections
-
-                break
-
-    # render the retrieved docs in the UI
-    write_custom_event(
-        current_step_nr,
-        SearchToolDelta(
-            queries=[],
-            documents=convert_inference_sections_to_search_docs(
-                retrieved_docs, is_internet=False
-            ),
-        ),
-        writer,
-    )
-
-    document_texts_list = []
-
-    for doc_num, retrieved_doc in enumerate(retrieved_docs[:15]):
-        if not isinstance(retrieved_doc, (InferenceSection, LlmDoc)):
-            raise ValueError(f"Unexpected document type: {type(retrieved_doc)}")
-        chunk_text = build_document_context(retrieved_doc, doc_num + 1)
-        document_texts_list.append(chunk_text)
-
-    document_texts = "\n\n".join(document_texts_list)
-
-    logger.debug(
-        f"Search end/LLM start for Standard Search {iteration_nr}.{parallelization_nr} at {datetime.now()}"
-    )
-
-    # Built prompt
-
-    if research_type == ResearchType.DEEP:
-        search_prompt = INTERNAL_SEARCH_PROMPTS[research_type].build(
-            search_query=branch_query,
-            base_question=base_question,
-            document_text=document_texts,
-        )
-
-        # Run LLM
-
-        # search_answer_json = None
-        search_answer_json = invoke_llm_json(
-            llm=graph_config.tooling.primary_llm,
-            prompt=create_question_prompt(
-                assistant_system_prompt, search_prompt + (assistant_task_prompt or "")
-            ),
-            schema=SearchAnswer,
-            timeout_override=TF_DR_TIMEOUT_LONG,
-            # max_tokens=1500,
-        )
-
-        logger.debug(
-            f"LLM/all done for Standard Search {iteration_nr}.{parallelization_nr} at {datetime.now()}"
-        )
-
-        # get cited documents
-        answer_string = search_answer_json.answer
-        claims = search_answer_json.claims or []
-        reasoning = search_answer_json.reasoning
-        # answer_string = ""
-        # claims = []
-
-        (
-            citation_numbers,
-            answer_string,
-            claims,
-        ) = extract_document_citations(answer_string, claims)
-
-        if citation_numbers and (
-            (max(citation_numbers) > len(retrieved_docs)) or min(citation_numbers) < 1
-        ):
-            raise ValueError("Citation numbers are out of range for retrieved docs.")
-
-        cited_documents = {
-            citation_number: retrieved_docs[citation_number - 1]
-            for citation_number in citation_numbers
-        }
-
-    else:
-        answer_string = ""
-        claims = []
-        cited_documents = {
-            doc_num + 1: retrieved_doc
-            for doc_num, retrieved_doc in enumerate(retrieved_docs[:15])
-        }
-        reasoning = ""
-
-    return BranchUpdate(
-        branch_iteration_responses=[
-            IterationAnswer(
-                tool=search_tool_info.llm_path,
-                tool_id=search_tool_info.tool_id,
-                iteration_nr=iteration_nr,
-                parallelization_nr=parallelization_nr,
-                question=branch_query,
-                answer=answer_string,
-                claims=claims,
-                cited_documents=cited_documents,
-                reasoning=reasoning,
-                additional_data=None,
-            )
-        ],
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="basic_search",
-                node_name="searching",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/sub_agents/basic_search/dr_basic_search_3_reduce.py

@@ -1,77 +0,0 @@
-from datetime import datetime
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentMainState
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentUpdate
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.context.search.models import SavedSearchDoc
-from onyx.context.search.models import SearchDoc
-from onyx.server.query_and_chat.streaming_models import SectionEnd
-from onyx.utils.logger import setup_logger
-
-
-logger = setup_logger()
-
-
-def is_reducer(
-    state: SubAgentMainState,
-    config: RunnableConfig,
-    writer: StreamWriter = lambda _: None,
-) -> SubAgentUpdate:
-    """
-    LangGraph node to perform a standard search as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-
-    branch_updates = state.branch_iteration_responses
-    current_iteration = state.iteration_nr
-    current_step_nr = state.current_step_nr
-
-    new_updates = [
-        update for update in branch_updates if update.iteration_nr == current_iteration
-    ]
-
-    [update.question for update in new_updates]
-    doc_lists = [list(update.cited_documents.values()) for update in new_updates]
-
-    doc_list = []
-
-    for xs in doc_lists:
-        for x in xs:
-            doc_list.append(x)
-
-    # Convert InferenceSections to SavedSearchDocs
-    search_docs = SearchDoc.from_chunks_or_sections(doc_list)
-    retrieved_saved_search_docs = [
-        SavedSearchDoc.from_search_doc(search_doc, db_doc_id=0)
-        for search_doc in search_docs
-    ]
-
-    for retrieved_saved_search_doc in retrieved_saved_search_docs:
-        retrieved_saved_search_doc.is_internet = False
-
-    write_custom_event(
-        current_step_nr,
-        SectionEnd(),
-        writer,
-    )
-
-    current_step_nr += 1
-
-    return SubAgentUpdate(
-        iteration_responses=new_updates,
-        current_step_nr=current_step_nr,
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="basic_search",
-                node_name="consolidation",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/sub_agents/basic_search/dr_basic_search_graph_builder.py

@@ -1,50 +0,0 @@
-from langgraph.graph import END
-from langgraph.graph import START
-from langgraph.graph import StateGraph
-
-from onyx.agents.agent_search.dr.sub_agents.basic_search.dr_basic_search_1_branch import (
-    basic_search_branch,
-)
-from onyx.agents.agent_search.dr.sub_agents.basic_search.dr_basic_search_2_act import (
-    basic_search,
-)
-from onyx.agents.agent_search.dr.sub_agents.basic_search.dr_basic_search_3_reduce import (
-    is_reducer,
-)
-from onyx.agents.agent_search.dr.sub_agents.basic_search.dr_image_generation_conditional_edges import (
-    branching_router,
-)
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentInput
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentMainState
-from onyx.utils.logger import setup_logger
-
-
-logger = setup_logger()
-
-
-def dr_basic_search_graph_builder() -> StateGraph:
-    """
-    LangGraph graph builder for Web Search Sub-Agent
-    """
-
-    graph = StateGraph(state_schema=SubAgentMainState, input=SubAgentInput)
-
-    ### Add nodes ###
-
-    graph.add_node("branch", basic_search_branch)
-
-    graph.add_node("act", basic_search)
-
-    graph.add_node("reducer", is_reducer)
-
-    ### Add edges ###
-
-    graph.add_edge(start_key=START, end_key="branch")
-
-    graph.add_conditional_edges("branch", branching_router)
-
-    graph.add_edge(start_key="act", end_key="reducer")
-
-    graph.add_edge(start_key="reducer", end_key=END)
-
-    return graph

backend/onyx/agents/agent_search/dr/sub_agents/basic_search/dr_image_generation_conditional_edges.py

@@ -1,30 +0,0 @@
-from collections.abc import Hashable
-
-from langgraph.types import Send
-
-from onyx.agents.agent_search.dr.constants import MAX_DR_PARALLEL_SEARCH
-from onyx.agents.agent_search.dr.sub_agents.states import BranchInput
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentInput
-
-
-def branching_router(state: SubAgentInput) -> list[Send | Hashable]:
-    return [
-        Send(
-            "act",
-            BranchInput(
-                iteration_nr=state.iteration_nr,
-                parallelization_nr=parallelization_nr,
-                branch_question=query,
-                current_step_nr=state.current_step_nr,
-                context="",
-                active_source_types=state.active_source_types,
-                tools_used=state.tools_used,
-                available_tools=state.available_tools,
-                assistant_system_prompt=state.assistant_system_prompt,
-                assistant_task_prompt=state.assistant_task_prompt,
-            ),
-        )
-        for parallelization_nr, query in enumerate(
-            state.query_list[:MAX_DR_PARALLEL_SEARCH]
-        )
-    ]

backend/onyx/agents/agent_search/dr/sub_agents/custom_tool/dr_custom_tool_1_branch.py

@@ -1,36 +0,0 @@
-from datetime import datetime
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.states import LoggerUpdate
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentInput
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-def custom_tool_branch(
-    state: SubAgentInput, config: RunnableConfig, writer: StreamWriter = lambda _: None
-) -> LoggerUpdate:
-    """
-    LangGraph node to perform a generic tool call as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-    iteration_nr = state.iteration_nr
-
-    logger.debug(f"Search start for Generic Tool {iteration_nr} at {datetime.now()}")
-
-    return LoggerUpdate(
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="custom_tool",
-                node_name="branching",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/sub_agents/custom_tool/dr_custom_tool_2_act.py

@@ -1,169 +0,0 @@
-import json
-from datetime import datetime
-from typing import cast
-
-from langchain_core.messages import AIMessage
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.sub_agents.states import BranchInput
-from onyx.agents.agent_search.dr.sub_agents.states import BranchUpdate
-from onyx.agents.agent_search.dr.sub_agents.states import IterationAnswer
-from onyx.agents.agent_search.models import GraphConfig
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.configs.agent_configs import TF_DR_TIMEOUT_LONG
-from onyx.configs.agent_configs import TF_DR_TIMEOUT_SHORT
-from onyx.prompts.dr_prompts import CUSTOM_TOOL_PREP_PROMPT
-from onyx.prompts.dr_prompts import CUSTOM_TOOL_USE_PROMPT
-from onyx.tools.tool_implementations.custom.custom_tool import CUSTOM_TOOL_RESPONSE_ID
-from onyx.tools.tool_implementations.custom.custom_tool import CustomTool
-from onyx.tools.tool_implementations.custom.custom_tool import CustomToolCallSummary
-from onyx.tools.tool_implementations.mcp.mcp_tool import MCP_TOOL_RESPONSE_ID
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-def custom_tool_act(
-    state: BranchInput,
-    config: RunnableConfig,
-    writer: StreamWriter = lambda _: None,
-) -> BranchUpdate:
-    """
-    LangGraph node to perform a generic tool call as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-    iteration_nr = state.iteration_nr
-    parallelization_nr = state.parallelization_nr
-
-    if not state.available_tools:
-        raise ValueError("available_tools is not set")
-
-    custom_tool_info = state.available_tools[state.tools_used[-1]]
-    custom_tool_name = custom_tool_info.name
-    custom_tool = cast(CustomTool, custom_tool_info.tool_object)
-
-    branch_query = state.branch_question
-    if not branch_query:
-        raise ValueError("branch_query is not set")
-
-    graph_config = cast(GraphConfig, config["metadata"]["config"])
-    base_question = graph_config.inputs.prompt_builder.raw_user_query
-
-    logger.debug(
-        f"Tool call start for {custom_tool_name} {iteration_nr}.{parallelization_nr} at {datetime.now()}"
-    )
-
-    # get tool call args
-    tool_args: dict | None = None
-    if graph_config.tooling.using_tool_calling_llm:
-        # get tool call args from tool-calling LLM
-        tool_use_prompt = CUSTOM_TOOL_PREP_PROMPT.build(
-            query=branch_query,
-            base_question=base_question,
-            tool_description=custom_tool_info.description,
-        )
-        tool_calling_msg = graph_config.tooling.primary_llm.invoke_langchain(
-            tool_use_prompt,
-            tools=[custom_tool.tool_definition()],
-            tool_choice="required",
-            timeout_override=TF_DR_TIMEOUT_LONG,
-        )
-
-        # make sure we got a tool call
-        if (
-            isinstance(tool_calling_msg, AIMessage)
-            and len(tool_calling_msg.tool_calls) == 1
-        ):
-            tool_args = tool_calling_msg.tool_calls[0]["args"]
-        else:
-            logger.warning("Tool-calling LLM did not emit a tool call")
-
-    if tool_args is None:
-        # get tool call args from non-tool-calling LLM or for failed tool-calling LLM
-        tool_args = custom_tool.get_args_for_non_tool_calling_llm(
-            query=branch_query,
-            history=[],
-            llm=graph_config.tooling.primary_llm,
-            force_run=True,
-        )
-
-    if tool_args is None:
-        raise ValueError("Failed to obtain tool arguments from LLM")
-
-    # run the tool
-    response_summary: CustomToolCallSummary | None = None
-    for tool_response in custom_tool.run(**tool_args):
-        if tool_response.id in {CUSTOM_TOOL_RESPONSE_ID, MCP_TOOL_RESPONSE_ID}:
-            response_summary = cast(CustomToolCallSummary, tool_response.response)
-            break
-
-    if not response_summary:
-        raise ValueError("Custom tool did not return a valid response summary")
-
-    # summarise tool result
-    if not response_summary.response_type:
-        raise ValueError("Response type is not returned.")
-
-    if response_summary.response_type == "json":
-        tool_result_str = json.dumps(response_summary.tool_result, ensure_ascii=False)
-    elif response_summary.response_type in {"image", "csv"}:
-        tool_result_str = f"{response_summary.response_type} files: {response_summary.tool_result.file_ids}"
-    else:
-        tool_result_str = str(response_summary.tool_result)
-
-    tool_str = (
-        f"Tool used: {custom_tool_name}\n"
-        f"Description: {custom_tool_info.description}\n"
-        f"Result: {tool_result_str}"
-    )
-
-    tool_summary_prompt = CUSTOM_TOOL_USE_PROMPT.build(
-        query=branch_query, base_question=base_question, tool_response=tool_str
-    )
-    answer_string = str(
-        graph_config.tooling.primary_llm.invoke_langchain(
-            tool_summary_prompt, timeout_override=TF_DR_TIMEOUT_SHORT
-        ).content
-    ).strip()
-
-    # get file_ids:
-    file_ids = None
-    if response_summary.response_type in {"image", "csv"} and hasattr(
-        response_summary.tool_result, "file_ids"
-    ):
-        file_ids = response_summary.tool_result.file_ids
-
-    logger.debug(
-        f"Tool call end for {custom_tool_name} {iteration_nr}.{parallelization_nr} at {datetime.now()}"
-    )
-
-    return BranchUpdate(
-        branch_iteration_responses=[
-            IterationAnswer(
-                tool=custom_tool_name,
-                tool_id=custom_tool_info.tool_id,
-                iteration_nr=iteration_nr,
-                parallelization_nr=parallelization_nr,
-                question=branch_query,
-                answer=answer_string,
-                claims=[],
-                cited_documents={},
-                reasoning="",
-                additional_data=None,
-                response_type=response_summary.response_type,
-                data=response_summary.tool_result,
-                file_ids=file_ids,
-            )
-        ],
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="custom_tool",
-                node_name="tool_calling",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/sub_agents/custom_tool/dr_custom_tool_3_reduce.py

@@ -1,82 +0,0 @@
-from datetime import datetime
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentMainState
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentUpdate
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.server.query_and_chat.streaming_models import CustomToolDelta
-from onyx.server.query_and_chat.streaming_models import CustomToolStart
-from onyx.server.query_and_chat.streaming_models import SectionEnd
-from onyx.utils.logger import setup_logger
-
-
-logger = setup_logger()
-
-
-def custom_tool_reducer(
-    state: SubAgentMainState,
-    config: RunnableConfig,
-    writer: StreamWriter = lambda _: None,
-) -> SubAgentUpdate:
-    """
-    LangGraph node to perform a generic tool call as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-
-    current_step_nr = state.current_step_nr
-
-    branch_updates = state.branch_iteration_responses
-    current_iteration = state.iteration_nr
-
-    new_updates = [
-        update for update in branch_updates if update.iteration_nr == current_iteration
-    ]
-
-    for new_update in new_updates:
-
-        if not new_update.response_type:
-            raise ValueError("Response type is not returned.")
-
-        write_custom_event(
-            current_step_nr,
-            CustomToolStart(
-                tool_name=new_update.tool,
-            ),
-            writer,
-        )
-
-        write_custom_event(
-            current_step_nr,
-            CustomToolDelta(
-                tool_name=new_update.tool,
-                response_type=new_update.response_type,
-                data=new_update.data,
-                file_ids=new_update.file_ids,
-            ),
-            writer,
-        )
-
-        write_custom_event(
-            current_step_nr,
-            SectionEnd(),
-            writer,
-        )
-
-        current_step_nr += 1
-
-    return SubAgentUpdate(
-        iteration_responses=new_updates,
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="custom_tool",
-                node_name="consolidation",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/sub_agents/custom_tool/dr_custom_tool_conditional_edges.py

@@ -1,28 +0,0 @@
-from collections.abc import Hashable
-
-from langgraph.types import Send
-
-from onyx.agents.agent_search.dr.sub_agents.states import BranchInput
-from onyx.agents.agent_search.dr.sub_agents.states import (
-    SubAgentInput,
-)
-
-
-def branching_router(state: SubAgentInput) -> list[Send | Hashable]:
-    return [
-        Send(
-            "act",
-            BranchInput(
-                iteration_nr=state.iteration_nr,
-                parallelization_nr=parallelization_nr,
-                branch_question=query,
-                context="",
-                active_source_types=state.active_source_types,
-                tools_used=state.tools_used,
-                available_tools=state.available_tools,
-            ),
-        )
-        for parallelization_nr, query in enumerate(
-            state.query_list[:1]  # no parallel call for now
-        )
-    ]

backend/onyx/agents/agent_search/dr/sub_agents/custom_tool/dr_custom_tool_graph_builder.py

@@ -1,50 +0,0 @@
-from langgraph.graph import END
-from langgraph.graph import START
-from langgraph.graph import StateGraph
-
-from onyx.agents.agent_search.dr.sub_agents.custom_tool.dr_custom_tool_1_branch import (
-    custom_tool_branch,
-)
-from onyx.agents.agent_search.dr.sub_agents.custom_tool.dr_custom_tool_2_act import (
-    custom_tool_act,
-)
-from onyx.agents.agent_search.dr.sub_agents.custom_tool.dr_custom_tool_3_reduce import (
-    custom_tool_reducer,
-)
-from onyx.agents.agent_search.dr.sub_agents.custom_tool.dr_custom_tool_conditional_edges import (
-    branching_router,
-)
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentInput
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentMainState
-from onyx.utils.logger import setup_logger
-
-
-logger = setup_logger()
-
-
-def dr_custom_tool_graph_builder() -> StateGraph:
-    """
-    LangGraph graph builder for Generic Tool Sub-Agent
-    """
-
-    graph = StateGraph(state_schema=SubAgentMainState, input=SubAgentInput)
-
-    ### Add nodes ###
-
-    graph.add_node("branch", custom_tool_branch)
-
-    graph.add_node("act", custom_tool_act)
-
-    graph.add_node("reducer", custom_tool_reducer)
-
-    ### Add edges ###
-
-    graph.add_edge(start_key=START, end_key="branch")
-
-    graph.add_conditional_edges("branch", branching_router)
-
-    graph.add_edge(start_key="act", end_key="reducer")
-
-    graph.add_edge(start_key="reducer", end_key=END)
-
-    return graph

backend/onyx/agents/agent_search/dr/sub_agents/generic_internal_tool/dr_generic_internal_tool_1_branch.py

@@ -1,36 +0,0 @@
-from datetime import datetime
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.states import LoggerUpdate
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentInput
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-def generic_internal_tool_branch(
-    state: SubAgentInput, config: RunnableConfig, writer: StreamWriter = lambda _: None
-) -> LoggerUpdate:
-    """
-    LangGraph node to perform a generic tool call as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-    iteration_nr = state.iteration_nr
-
-    logger.debug(f"Search start for Generic Tool {iteration_nr} at {datetime.now()}")
-
-    return LoggerUpdate(
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="generic_internal_tool",
-                node_name="branching",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/sub_agents/generic_internal_tool/dr_generic_internal_tool_2_act.py

@@ -1,149 +0,0 @@
-import json
-from datetime import datetime
-from typing import cast
-
-from langchain_core.messages import AIMessage
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.sub_agents.states import BranchInput
-from onyx.agents.agent_search.dr.sub_agents.states import BranchUpdate
-from onyx.agents.agent_search.dr.sub_agents.states import IterationAnswer
-from onyx.agents.agent_search.models import GraphConfig
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.configs.agent_configs import TF_DR_TIMEOUT_SHORT
-from onyx.prompts.dr_prompts import CUSTOM_TOOL_PREP_PROMPT
-from onyx.prompts.dr_prompts import CUSTOM_TOOL_USE_PROMPT
-from onyx.prompts.dr_prompts import OKTA_TOOL_USE_SPECIAL_PROMPT
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-def generic_internal_tool_act(
-    state: BranchInput,
-    config: RunnableConfig,
-    writer: StreamWriter = lambda _: None,
-) -> BranchUpdate:
-    """
-    LangGraph node to perform a generic tool call as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-    iteration_nr = state.iteration_nr
-    parallelization_nr = state.parallelization_nr
-
-    if not state.available_tools:
-        raise ValueError("available_tools is not set")
-
-    generic_internal_tool_info = state.available_tools[state.tools_used[-1]]
-    generic_internal_tool_name = generic_internal_tool_info.llm_path
-    generic_internal_tool = generic_internal_tool_info.tool_object
-
-    if generic_internal_tool is None:
-        raise ValueError("generic_internal_tool is not set")
-
-    branch_query = state.branch_question
-    if not branch_query:
-        raise ValueError("branch_query is not set")
-
-    graph_config = cast(GraphConfig, config["metadata"]["config"])
-    base_question = graph_config.inputs.prompt_builder.raw_user_query
-
-    logger.debug(
-        f"Tool call start for {generic_internal_tool_name} {iteration_nr}.{parallelization_nr} at {datetime.now()}"
-    )
-
-    # get tool call args
-    tool_args: dict | None = None
-    if graph_config.tooling.using_tool_calling_llm:
-        # get tool call args from tool-calling LLM
-        tool_use_prompt = CUSTOM_TOOL_PREP_PROMPT.build(
-            query=branch_query,
-            base_question=base_question,
-            tool_description=generic_internal_tool_info.description,
-        )
-        tool_calling_msg = graph_config.tooling.primary_llm.invoke_langchain(
-            tool_use_prompt,
-            tools=[generic_internal_tool.tool_definition()],
-            tool_choice="required",
-            timeout_override=TF_DR_TIMEOUT_SHORT,
-        )
-
-        # make sure we got a tool call
-        if (
-            isinstance(tool_calling_msg, AIMessage)
-            and len(tool_calling_msg.tool_calls) == 1
-        ):
-            tool_args = tool_calling_msg.tool_calls[0]["args"]
-        else:
-            logger.warning("Tool-calling LLM did not emit a tool call")
-
-    if tool_args is None:
-        # get tool call args from non-tool-calling LLM or for failed tool-calling LLM
-        tool_args = generic_internal_tool.get_args_for_non_tool_calling_llm(
-            query=branch_query,
-            history=[],
-            llm=graph_config.tooling.primary_llm,
-            force_run=True,
-        )
-
-    if tool_args is None:
-        raise ValueError("Failed to obtain tool arguments from LLM")
-
-    # run the tool
-    tool_responses = list(generic_internal_tool.run(**tool_args))
-    final_data = generic_internal_tool.final_result(*tool_responses)
-    tool_result_str = json.dumps(final_data, ensure_ascii=False)
-
-    tool_str = (
-        f"Tool used: {generic_internal_tool.display_name}\n"
-        f"Description: {generic_internal_tool_info.description}\n"
-        f"Result: {tool_result_str}"
-    )
-
-    if generic_internal_tool.display_name == "Okta Profile":
-        tool_prompt = OKTA_TOOL_USE_SPECIAL_PROMPT
-    else:
-        tool_prompt = CUSTOM_TOOL_USE_PROMPT
-
-    tool_summary_prompt = tool_prompt.build(
-        query=branch_query, base_question=base_question, tool_response=tool_str
-    )
-    answer_string = str(
-        graph_config.tooling.primary_llm.invoke_langchain(
-            tool_summary_prompt, timeout_override=TF_DR_TIMEOUT_SHORT
-        ).content
-    ).strip()
-
-    logger.debug(
-        f"Tool call end for {generic_internal_tool_name} {iteration_nr}.{parallelization_nr} at {datetime.now()}"
-    )
-
-    return BranchUpdate(
-        branch_iteration_responses=[
-            IterationAnswer(
-                tool=generic_internal_tool.llm_name,
-                tool_id=generic_internal_tool_info.tool_id,
-                iteration_nr=iteration_nr,
-                parallelization_nr=parallelization_nr,
-                question=branch_query,
-                answer=answer_string,
-                claims=[],
-                cited_documents={},
-                reasoning="",
-                additional_data=None,
-                response_type="text",  # TODO: convert all response types to enums
-                data=answer_string,
-            )
-        ],
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="custom_tool",
-                node_name="tool_calling",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/sub_agents/generic_internal_tool/dr_generic_internal_tool_3_reduce.py

@@ -1,82 +0,0 @@
-from datetime import datetime
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentMainState
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentUpdate
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.server.query_and_chat.streaming_models import CustomToolDelta
-from onyx.server.query_and_chat.streaming_models import CustomToolStart
-from onyx.server.query_and_chat.streaming_models import SectionEnd
-from onyx.utils.logger import setup_logger
-
-
-logger = setup_logger()
-
-
-def generic_internal_tool_reducer(
-    state: SubAgentMainState,
-    config: RunnableConfig,
-    writer: StreamWriter = lambda _: None,
-) -> SubAgentUpdate:
-    """
-    LangGraph node to perform a generic tool call as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-
-    current_step_nr = state.current_step_nr
-
-    branch_updates = state.branch_iteration_responses
-    current_iteration = state.iteration_nr
-
-    new_updates = [
-        update for update in branch_updates if update.iteration_nr == current_iteration
-    ]
-
-    for new_update in new_updates:
-
-        if not new_update.response_type:
-            raise ValueError("Response type is not returned.")
-
-        write_custom_event(
-            current_step_nr,
-            CustomToolStart(
-                tool_name=new_update.tool,
-            ),
-            writer,
-        )
-
-        write_custom_event(
-            current_step_nr,
-            CustomToolDelta(
-                tool_name=new_update.tool,
-                response_type=new_update.response_type,
-                data=new_update.data,
-                file_ids=[],
-            ),
-            writer,
-        )
-
-        write_custom_event(
-            current_step_nr,
-            SectionEnd(),
-            writer,
-        )
-
-        current_step_nr += 1
-
-    return SubAgentUpdate(
-        iteration_responses=new_updates,
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="custom_tool",
-                node_name="consolidation",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/sub_agents/generic_internal_tool/dr_generic_internal_tool_conditional_edges.py

@@ -1,28 +0,0 @@
-from collections.abc import Hashable
-
-from langgraph.types import Send
-
-from onyx.agents.agent_search.dr.sub_agents.states import BranchInput
-from onyx.agents.agent_search.dr.sub_agents.states import (
-    SubAgentInput,
-)
-
-
-def branching_router(state: SubAgentInput) -> list[Send | Hashable]:
-    return [
-        Send(
-            "act",
-            BranchInput(
-                iteration_nr=state.iteration_nr,
-                parallelization_nr=parallelization_nr,
-                branch_question=query,
-                context="",
-                active_source_types=state.active_source_types,
-                tools_used=state.tools_used,
-                available_tools=state.available_tools,
-            ),
-        )
-        for parallelization_nr, query in enumerate(
-            state.query_list[:1]  # no parallel call for now
-        )
-    ]

backend/onyx/agents/agent_search/dr/sub_agents/generic_internal_tool/dr_generic_internal_tool_graph_builder.py

@@ -1,50 +0,0 @@
-from langgraph.graph import END
-from langgraph.graph import START
-from langgraph.graph import StateGraph
-
-from onyx.agents.agent_search.dr.sub_agents.generic_internal_tool.dr_generic_internal_tool_1_branch import (
-    generic_internal_tool_branch,
-)
-from onyx.agents.agent_search.dr.sub_agents.generic_internal_tool.dr_generic_internal_tool_2_act import (
-    generic_internal_tool_act,
-)
-from onyx.agents.agent_search.dr.sub_agents.generic_internal_tool.dr_generic_internal_tool_3_reduce import (
-    generic_internal_tool_reducer,
-)
-from onyx.agents.agent_search.dr.sub_agents.generic_internal_tool.dr_generic_internal_tool_conditional_edges import (
-    branching_router,
-)
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentInput
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentMainState
-from onyx.utils.logger import setup_logger
-
-
-logger = setup_logger()
-
-
-def dr_generic_internal_tool_graph_builder() -> StateGraph:
-    """
-    LangGraph graph builder for Generic Tool Sub-Agent
-    """
-
-    graph = StateGraph(state_schema=SubAgentMainState, input=SubAgentInput)
-
-    ### Add nodes ###
-
-    graph.add_node("branch", generic_internal_tool_branch)
-
-    graph.add_node("act", generic_internal_tool_act)
-
-    graph.add_node("reducer", generic_internal_tool_reducer)
-
-    ### Add edges ###
-
-    graph.add_edge(start_key=START, end_key="branch")
-
-    graph.add_conditional_edges("branch", branching_router)
-
-    graph.add_edge(start_key="act", end_key="reducer")
-
-    graph.add_edge(start_key="reducer", end_key=END)
-
-    return graph

backend/onyx/agents/agent_search/dr/sub_agents/image_generation/dr_image_generation_1_branch.py

@@ -1,45 +0,0 @@
-from datetime import datetime
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.states import LoggerUpdate
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentInput
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.server.query_and_chat.streaming_models import ImageGenerationToolStart
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-def image_generation_branch(
-    state: SubAgentInput, config: RunnableConfig, writer: StreamWriter = lambda _: None
-) -> LoggerUpdate:
-    """
-    LangGraph node to perform a image generation as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-    iteration_nr = state.iteration_nr
-
-    logger.debug(f"Image generation start {iteration_nr} at {datetime.now()}")
-
-    # tell frontend that we are starting the image generation tool
-    write_custom_event(
-        state.current_step_nr,
-        ImageGenerationToolStart(),
-        writer,
-    )
-
-    return LoggerUpdate(
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="image_generation",
-                node_name="branching",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/sub_agents/image_generation/dr_image_generation_2_act.py

@@ -1,189 +0,0 @@
-import json
-from datetime import datetime
-from typing import cast
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.models import GeneratedImage
-from onyx.agents.agent_search.dr.models import IterationAnswer
-from onyx.agents.agent_search.dr.sub_agents.states import BranchInput
-from onyx.agents.agent_search.dr.sub_agents.states import BranchUpdate
-from onyx.agents.agent_search.models import GraphConfig
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.file_store.utils import build_frontend_file_url
-from onyx.file_store.utils import save_files
-from onyx.server.query_and_chat.streaming_models import ImageGenerationToolHeartbeat
-from onyx.tools.tool_implementations.images.image_generation_tool import (
-    IMAGE_GENERATION_HEARTBEAT_ID,
-)
-from onyx.tools.tool_implementations.images.image_generation_tool import (
-    IMAGE_GENERATION_RESPONSE_ID,
-)
-from onyx.tools.tool_implementations.images.image_generation_tool import (
-    ImageGenerationResponse,
-)
-from onyx.tools.tool_implementations.images.image_generation_tool import (
-    ImageGenerationTool,
-)
-from onyx.tools.tool_implementations.images.image_generation_tool import ImageShape
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-def image_generation(
-    state: BranchInput,
-    config: RunnableConfig,
-    writer: StreamWriter = lambda _: None,
-) -> BranchUpdate:
-    """
-    LangGraph node to perform a standard search as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-    iteration_nr = state.iteration_nr
-    parallelization_nr = state.parallelization_nr
-    state.assistant_system_prompt
-    state.assistant_task_prompt
-
-    branch_query = state.branch_question
-    if not branch_query:
-        raise ValueError("branch_query is not set")
-
-    graph_config = cast(GraphConfig, config["metadata"]["config"])
-    graph_config.inputs.prompt_builder.raw_user_query
-    graph_config.behavior.research_type
-
-    if not state.available_tools:
-        raise ValueError("available_tools is not set")
-
-    image_tool_info = state.available_tools[state.tools_used[-1]]
-    image_tool = cast(ImageGenerationTool, image_tool_info.tool_object)
-
-    image_prompt = branch_query
-    requested_shape: ImageShape | None = None
-
-    try:
-        parsed_query = json.loads(branch_query)
-    except json.JSONDecodeError:
-        parsed_query = None
-
-    if isinstance(parsed_query, dict):
-        prompt_from_llm = parsed_query.get("prompt")
-        if isinstance(prompt_from_llm, str) and prompt_from_llm.strip():
-            image_prompt = prompt_from_llm.strip()
-
-        raw_shape = parsed_query.get("shape")
-        if isinstance(raw_shape, str):
-            try:
-                requested_shape = ImageShape(raw_shape)
-            except ValueError:
-                logger.warning(
-                    "Received unsupported image shape '%s' from LLM. Falling back to square.",
-                    raw_shape,
-                )
-
-    logger.debug(
-        f"Image generation start for {iteration_nr}.{parallelization_nr} at {datetime.now()}"
-    )
-
-    # Generate images using the image generation tool
-    image_generation_responses: list[ImageGenerationResponse] = []
-
-    if requested_shape is not None:
-        tool_iterator = image_tool.run(
-            prompt=image_prompt,
-            shape=requested_shape.value,
-        )
-    else:
-        tool_iterator = image_tool.run(prompt=image_prompt)
-
-    for tool_response in tool_iterator:
-        if tool_response.id == IMAGE_GENERATION_HEARTBEAT_ID:
-            # Stream heartbeat to frontend
-            write_custom_event(
-                state.current_step_nr,
-                ImageGenerationToolHeartbeat(),
-                writer,
-            )
-        elif tool_response.id == IMAGE_GENERATION_RESPONSE_ID:
-            response = cast(list[ImageGenerationResponse], tool_response.response)
-            image_generation_responses = response
-            break
-
-    # save images to file store
-    file_ids = save_files(
-        urls=[],
-        base64_files=[img.image_data for img in image_generation_responses],
-    )
-
-    final_generated_images = [
-        GeneratedImage(
-            file_id=file_id,
-            url=build_frontend_file_url(file_id),
-            revised_prompt=img.revised_prompt,
-            shape=(requested_shape or ImageShape.SQUARE).value,
-        )
-        for file_id, img in zip(file_ids, image_generation_responses)
-    ]
-
-    logger.debug(
-        f"Image generation complete for {iteration_nr}.{parallelization_nr} at {datetime.now()}"
-    )
-
-    # Create answer string describing the generated images
-    if final_generated_images:
-        image_descriptions = []
-        for i, img in enumerate(final_generated_images, 1):
-            if img.shape and img.shape != ImageShape.SQUARE.value:
-                image_descriptions.append(
-                    f"Image {i}: {img.revised_prompt} (shape: {img.shape})"
-                )
-            else:
-                image_descriptions.append(f"Image {i}: {img.revised_prompt}")
-
-        answer_string = (
-            f"Generated {len(final_generated_images)} image(s) based on the request: {image_prompt}\n\n"
-            + "\n".join(image_descriptions)
-        )
-        if requested_shape:
-            reasoning = (
-                "Used image generation tool to create "
-                f"{len(final_generated_images)} image(s) in {requested_shape.value} orientation."
-            )
-        else:
-            reasoning = (
-                "Used image generation tool to create "
-                f"{len(final_generated_images)} image(s) based on the user's request."
-            )
-    else:
-        answer_string = f"Failed to generate images for request: {image_prompt}"
-        reasoning = "Image generation tool did not return any results."
-
-    return BranchUpdate(
-        branch_iteration_responses=[
-            IterationAnswer(
-                tool=image_tool_info.llm_path,
-                tool_id=image_tool_info.tool_id,
-                iteration_nr=iteration_nr,
-                parallelization_nr=parallelization_nr,
-                question=branch_query,
-                answer=answer_string,
-                claims=[],
-                cited_documents={},
-                reasoning=reasoning,
-                generated_images=final_generated_images,
-            )
-        ],
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="image_generation",
-                node_name="generating",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/sub_agents/image_generation/dr_image_generation_3_reduce.py

@@ -1,71 +0,0 @@
-from datetime import datetime
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.models import GeneratedImage
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentMainState
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentUpdate
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.agents.agent_search.shared_graph_utils.utils import write_custom_event
-from onyx.server.query_and_chat.streaming_models import ImageGenerationToolDelta
-from onyx.server.query_and_chat.streaming_models import SectionEnd
-from onyx.utils.logger import setup_logger
-
-
-logger = setup_logger()
-
-
-def is_reducer(
-    state: SubAgentMainState,
-    config: RunnableConfig,
-    writer: StreamWriter = lambda _: None,
-) -> SubAgentUpdate:
-    """
-    LangGraph node to perform a standard search as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-
-    branch_updates = state.branch_iteration_responses
-    current_iteration = state.iteration_nr
-    current_step_nr = state.current_step_nr
-
-    new_updates = [
-        update for update in branch_updates if update.iteration_nr == current_iteration
-    ]
-    generated_images: list[GeneratedImage] = []
-    for update in new_updates:
-        if update.generated_images:
-            generated_images.extend(update.generated_images)
-
-    # Write the results to the stream
-    write_custom_event(
-        current_step_nr,
-        ImageGenerationToolDelta(
-            images=generated_images,
-        ),
-        writer,
-    )
-
-    write_custom_event(
-        current_step_nr,
-        SectionEnd(),
-        writer,
-    )
-
-    current_step_nr += 1
-
-    return SubAgentUpdate(
-        iteration_responses=new_updates,
-        current_step_nr=current_step_nr,
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="image_generation",
-                node_name="consolidation",
-                node_start_time=node_start_time,
-            )
-        ],
-    )

backend/onyx/agents/agent_search/dr/sub_agents/image_generation/dr_image_generation_conditional_edges.py

@@ -1,29 +0,0 @@
-from collections.abc import Hashable
-
-from langgraph.types import Send
-
-from onyx.agents.agent_search.dr.constants import MAX_DR_PARALLEL_SEARCH
-from onyx.agents.agent_search.dr.sub_agents.states import BranchInput
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentInput
-
-
-def branching_router(state: SubAgentInput) -> list[Send | Hashable]:
-    return [
-        Send(
-            "act",
-            BranchInput(
-                iteration_nr=state.iteration_nr,
-                parallelization_nr=parallelization_nr,
-                branch_question=query,
-                context="",
-                active_source_types=state.active_source_types,
-                tools_used=state.tools_used,
-                available_tools=state.available_tools,
-                assistant_system_prompt=state.assistant_system_prompt,
-                assistant_task_prompt=state.assistant_task_prompt,
-            ),
-        )
-        for parallelization_nr, query in enumerate(
-            state.query_list[:MAX_DR_PARALLEL_SEARCH]
-        )
-    ]

backend/onyx/agents/agent_search/dr/sub_agents/image_generation/dr_image_generation_graph_builder.py

@@ -1,50 +0,0 @@
-from langgraph.graph import END
-from langgraph.graph import START
-from langgraph.graph import StateGraph
-
-from onyx.agents.agent_search.dr.sub_agents.image_generation.dr_image_generation_1_branch import (
-    image_generation_branch,
-)
-from onyx.agents.agent_search.dr.sub_agents.image_generation.dr_image_generation_2_act import (
-    image_generation,
-)
-from onyx.agents.agent_search.dr.sub_agents.image_generation.dr_image_generation_3_reduce import (
-    is_reducer,
-)
-from onyx.agents.agent_search.dr.sub_agents.image_generation.dr_image_generation_conditional_edges import (
-    branching_router,
-)
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentInput
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentMainState
-from onyx.utils.logger import setup_logger
-
-
-logger = setup_logger()
-
-
-def dr_image_generation_graph_builder() -> StateGraph:
-    """
-    LangGraph graph builder for Image Generation Sub-Agent
-    """
-
-    graph = StateGraph(state_schema=SubAgentMainState, input=SubAgentInput)
-
-    ### Add nodes ###
-
-    graph.add_node("branch", image_generation_branch)
-
-    graph.add_node("act", image_generation)
-
-    graph.add_node("reducer", is_reducer)
-
-    ### Add edges ###
-
-    graph.add_edge(start_key=START, end_key="branch")
-
-    graph.add_conditional_edges("branch", branching_router)
-
-    graph.add_edge(start_key="act", end_key="reducer")
-
-    graph.add_edge(start_key="reducer", end_key=END)
-
-    return graph

backend/onyx/agents/agent_search/dr/sub_agents/image_generation/models.py

@@ -1,13 +0,0 @@
-from pydantic import BaseModel
-
-
-class GeneratedImage(BaseModel):
-    file_id: str
-    url: str
-    revised_prompt: str
-    shape: str | None = None
-
-
-# Needed for PydanticType
-class GeneratedImageFullResult(BaseModel):
-    images: list[GeneratedImage]

backend/onyx/agents/agent_search/dr/sub_agents/kg_search/dr_kg_search_1_branch.py

@@ -1,36 +0,0 @@
-from datetime import datetime
-
-from langchain_core.runnables import RunnableConfig
-from langgraph.types import StreamWriter
-
-from onyx.agents.agent_search.dr.states import LoggerUpdate
-from onyx.agents.agent_search.dr.sub_agents.states import SubAgentInput
-from onyx.agents.agent_search.shared_graph_utils.utils import (
-    get_langgraph_node_log_string,
-)
-from onyx.utils.logger import setup_logger
-
-logger = setup_logger()
-
-
-def kg_search_branch(
-    state: SubAgentInput, config: RunnableConfig, writer: StreamWriter = lambda _: None
-) -> LoggerUpdate:
-    """
-    LangGraph node to perform a KG search as part of the DR process.
-    """
-
-    node_start_time = datetime.now()
-    iteration_nr = state.iteration_nr
-
-    logger.debug(f"Search start for KG Search {iteration_nr} at {datetime.now()}")
-
-    return LoggerUpdate(
-        log_messages=[
-            get_langgraph_node_log_string(
-                graph_component="kg_search",
-                node_name="branching",
-                node_start_time=node_start_time,
-            )
-        ],
-    )