Remove comment

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jamison Lahman <jamison@lahman.dev>

.git-blame-ignore-revs

@@ -0,0 +1,8 @@
+# Exclude these commits from git blame (e.g. mass reformatting).
+# These are ignored by GitHub automatically.
+# To enable this locally, run:
+#
+#    git config blame.ignoreRevsFile .git-blame-ignore-revs
+
+3134e5f840c12c8f32613ce520101a047c89dcc2  # refactor(whitespace): rm temporary react fragments (#7161)
+ed3f72bc75f3e3a9ae9e4d8cd38278f9c97e78b4  # refactor(whitespace): rm react fragment #7190

.github/CODEOWNERS

@@ -1,3 +1,10 @@
 * @onyx-dot-app/onyx-core-team
 # Helm charts Owners
 /helm/ @justin-tahara
+
+# Web standards updates
+/web/STANDARDS.md @raunakab @Weves
+
+# Agent context files
+/CLAUDE.md.template @Weves
+/AGENTS.md.template @Weves

.github/actions/prepare-build/action.yml

@@ -1,42 +0,0 @@
-name: "Prepare Build (OpenAPI generation)"
-description: "Sets up Python with uv, installs deps, generates OpenAPI schema and Python client, uploads artifact"
-inputs:
-  docker-username:
-    required: true
-  docker-password:
-    required: true
-runs:
-  using: "composite"
-  steps:
-    - name: Setup Python and Install Dependencies
-      uses: ./.github/actions/setup-python-and-install-dependencies
-
-    - name: Generate OpenAPI schema
-      shell: bash
-      working-directory: backend
-      env:
-        PYTHONPATH: "."
-      run: |
-        python scripts/onyx_openapi_schema.py --filename generated/openapi.json
-
-    # needed for pulling openapitools/openapi-generator-cli
-    # otherwise, we hit the "Unauthenticated users" limit
-    # https://docs.docker.com/docker-hub/usage/
-    - name: Login to Docker Hub
-      uses: docker/login-action@5e57cd118135c172c3672efd75eb46360885c0ef # ratchet:docker/login-action@v3
-      with:
-        username: ${{ inputs['docker-username'] }}
-        password: ${{ inputs['docker-password'] }}
-
-    - name: Generate OpenAPI Python client
-      shell: bash
-      run: |
-        docker run --rm \
-          -v "${{ github.workspace }}/backend/generated:/local" \
-          openapitools/openapi-generator-cli generate \
-          -i /local/openapi.json \
-          -g python \
-          -o /local/onyx_openapi_client \
-          --package-name onyx_openapi_client \
-          --skip-validate-spec \
-          --openapi-normalizer "SIMPLIFY_ONEOF_ANYOF=true,SET_OAS3_NULLABLE=true"

.github/actions/setup-python-and-install-dependencies/action.yml

@@ -1,22 +1,45 @@
 name: "Setup Python and Install Dependencies"
 description: "Sets up Python with uv and installs deps"
+inputs:
+  requirements:
+    description: "Newline-separated list of requirement files to install (relative to repo root)"
+    required: true
 runs:
   using: "composite"
   steps:
-    - name: Setup uv
-      uses: astral-sh/setup-uv@caf0cab7a618c569241d31dcd442f54681755d39 # ratchet:astral-sh/setup-uv@v3
-      # TODO: Enable caching once there is a uv.lock file checked in.
-      # with:
-      #   enable-cache: true
+    - name: Compute requirements hash
+      id: req-hash
+      shell: bash
+      env:
+        REQUIREMENTS: ${{ inputs.requirements }}
+      run: |
+        # Hash the contents of the specified requirement files
+        hash=""
+        while IFS= read -r req; do
+          if [ -n "$req" ] && [ -f "$req" ]; then
+            hash="$hash$(sha256sum "$req")"
+          fi
+        done <<< "$REQUIREMENTS"
+        echo "hash=$(echo "$hash" | sha256sum | cut -d' ' -f1)" >> "$GITHUB_OUTPUT"
 
+    # NOTE: This comes before Setup uv since clean-ups run in reverse chronological order
+    # such that Setup uv's prune-cache is able to prune the cache before we upload.
     - name: Cache uv cache directory
       uses: runs-on/cache@50350ad4242587b6c8c2baa2e740b1bc11285ff4 # ratchet:runs-on/cache@v4
       with:
         path: ~/.cache/uv
-        key: ${{ runner.os }}-uv-${{ hashFiles('backend/requirements/*.txt', 'backend/pyproject.toml') }}
+        key: ${{ runner.os }}-uv-${{ steps.req-hash.outputs.hash }}
         restore-keys: |
           ${{ runner.os }}-uv-
 
+    - name: Setup uv
+      uses: astral-sh/setup-uv@ed21f2f24f8dd64503750218de024bcf64c7250a # ratchet:astral-sh/setup-uv@v7
+      with:
+        version: "0.9.9"
+      # TODO: Enable caching once there is a uv.lock file checked in.
+      # with:
+      #   enable-cache: true
+
     - name: Setup Python
       uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # ratchet:actions/setup-python@v5
       with:
@@ -38,8 +61,16 @@ runs:
 
     - name: Install Python dependencies with uv
       shell: bash
+      env:
+        REQUIREMENTS: ${{ inputs.requirements }}
       run: |
-        uv pip install \
-          -r backend/requirements/default.txt \
-          -r backend/requirements/dev.txt \
-          -r backend/requirements/model_server.txt
+        # Build the uv pip install command with each requirement file as array elements
+        cmd=("uv" "pip" "install")
+        while IFS= read -r req; do
+          # Skip empty lines
+          if [ -n "$req" ]; then
+            cmd+=("-r" "$req")
+          fi
+        done <<< "$REQUIREMENTS"
+        echo "Running: ${cmd[*]}"
+        "${cmd[@]}"

.github/dependabot.yml

@@ -5,7 +5,7 @@ updates:
     schedule:
       interval: "weekly"
     cooldown:
-      default-days: 4
+      default-days: 7
     open-pull-requests-limit: 3
     assignees:
       - "jmelahman"
@@ -16,7 +16,7 @@ updates:
     schedule:
       interval: "weekly"
     cooldown:
-      default-days: 4
+      default-days: 7
     open-pull-requests-limit: 3
     assignees:
       - "jmelahman"

.github/pull_request_template.md

@@ -1,10 +1,10 @@
 ## Description
 
-[Provide a brief description of the changes in this PR]
+<!--- Provide a brief description of the changes in this PR --->
 
 ## How Has This Been Tested?
 
-[Describe the tests you ran to verify your changes]
+<!--- Describe the tests you ran to verify your changes --->
 
 ## Additional Options
 

.github/workflows/check-lazy-imports.yml

@@ -1,32 +0,0 @@
-name: Check Lazy Imports
-concurrency:
-  group: Check-Lazy-Imports-${{ github.workflow }}-${{ github.head_ref || github.event.workflow_run.head_branch || github.run_id }}
-  cancel-in-progress: true
-
-on:
-  merge_group:
-  pull_request:
-    branches:
-      - main
-      - 'release/**'
-
-permissions:
-  contents: read
-
-jobs:
-  check-lazy-imports:
-    runs-on: ubuntu-latest
-
-    steps:
-    - name: Checkout code
-      uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
-      with:
-        persist-credentials: false
-
-    - name: Set up Python
-      uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # ratchet:actions/setup-python@v6
-      with:
-        python-version: '3.11'
-
-    - name: Check lazy imports
-      run: python3 backend/scripts/check_lazy_imports.py

.github/workflows/deployment.yml

@@ -6,11 +6,11 @@ on:
       - "*"
   workflow_dispatch:
 
-permissions:
-  contents: read
+# Set restrictive default permissions for all jobs. Jobs that need more permissions
+# should explicitly declare them.
+permissions: {}
 
 env:
-  IS_DRY_RUN: ${{ github.event_name == 'workflow_dispatch' }}
   EDGE_TAG: ${{ startsWith(github.ref_name, 'nightly-latest') }}
 
 jobs:
@@ -18,7 +18,9 @@ jobs:
   determine-builds:
     # NOTE: Github-hosted runners have about 20s faster queue times and are preferred here.
     runs-on: ubuntu-slim
+    timeout-minutes: 90
     outputs:
+      build-desktop: ${{ steps.check.outputs.build-desktop }}
       build-web: ${{ steps.check.outputs.build-web }}
       build-web-cloud: ${{ steps.check.outputs.build-web-cloud }}
       build-backend: ${{ steps.check.outputs.build-backend }}
@@ -28,32 +30,46 @@ jobs:
       is-beta: ${{ steps.check.outputs.is-beta }}
       is-stable-standalone: ${{ steps.check.outputs.is-stable-standalone }}
       is-beta-standalone: ${{ steps.check.outputs.is-beta-standalone }}
+      is-test-run: ${{ steps.check.outputs.is-test-run }}
       sanitized-tag: ${{ steps.check.outputs.sanitized-tag }}
+      short-sha: ${{ steps.check.outputs.short-sha }}
     steps:
       - name: Check which components to build and version info
         id: check
+        env:
+          EVENT_NAME: ${{ github.event_name }}
         run: |
           TAG="${GITHUB_REF_NAME}"
           # Sanitize tag name by replacing slashes with hyphens (for Docker tag compatibility)
           SANITIZED_TAG=$(echo "$TAG" | tr '/' '-')
+          SHORT_SHA="${GITHUB_SHA::7}"
+
+          # Initialize all flags to false
           IS_CLOUD=false
-          BUILD_WEB=false
-          BUILD_WEB_CLOUD=false
-          BUILD_BACKEND=true
-          BUILD_MODEL_SERVER=true
+          IS_NIGHTLY=false
+          IS_VERSION_TAG=false
           IS_STABLE=false
           IS_BETA=false
           IS_STABLE_STANDALONE=false
           IS_BETA_STANDALONE=false
+          IS_PROD_TAG=false
+          IS_TEST_RUN=false
+          BUILD_DESKTOP=false
+          BUILD_WEB=false
+          BUILD_WEB_CLOUD=false
+          BUILD_BACKEND=true
+          BUILD_MODEL_SERVER=true
 
+          # Determine tag type based on pattern matching (do regex checks once)
           if [[ "$TAG" == *cloud* ]]; then
             IS_CLOUD=true
-            BUILD_WEB_CLOUD=true
-          else
-            BUILD_WEB=true
           fi
-
-          # Version checks (for web - any stable version)
+          if [[ "$TAG" == nightly* ]]; then
+            IS_NIGHTLY=true
+          fi
+          if [[ "$TAG" =~ ^v[0-9]+\.[0-9]+\.[0-9]+ ]]; then
+            IS_VERSION_TAG=true
+          fi
           if [[ "$TAG" =~ ^v[0-9]+\.[0-9]+\.[0-9]+$ ]]; then
             IS_STABLE=true
           fi
@@ -61,15 +77,37 @@ jobs:
             IS_BETA=true
           fi
 
-          # Version checks (for backend/model-server - stable version excluding cloud tags)
-          if [[ "$TAG" =~ ^v[0-9]+\.[0-9]+\.[0-9]+$ ]] && [[ "$TAG" != *cloud* ]]; then
+          # Determine what to build based on tag type
+          if [[ "$IS_CLOUD" == "true" ]]; then
+            BUILD_WEB_CLOUD=true
+          else
+            BUILD_WEB=true
+            # Skip desktop builds on beta tags and nightly runs
+            if [[ "$IS_BETA" != "true" ]] && [[ "$IS_NIGHTLY" != "true" ]]; then
+              BUILD_DESKTOP=true
+            fi
+          fi
+
+          # Standalone version checks (for backend/model-server - version excluding cloud tags)
+          if [[ "$IS_STABLE" == "true" ]] && [[ "$IS_CLOUD" != "true" ]]; then
             IS_STABLE_STANDALONE=true
           fi
-          if [[ "$TAG" =~ ^v[0-9]+\.[0-9]+\.[0-9]+-beta\.[0-9]+$ ]] && [[ "$TAG" != *cloud* ]]; then
+          if [[ "$IS_BETA" == "true" ]] && [[ "$IS_CLOUD" != "true" ]]; then
             IS_BETA_STANDALONE=true
           fi
 
+          # Determine if this is a production tag
+          # Production tags are: version tags (v1.2.3*) or nightly tags
+          if [[ "$IS_VERSION_TAG" == "true" ]] || [[ "$IS_NIGHTLY" == "true" ]]; then
+            IS_PROD_TAG=true
+          fi
+
+          # Determine if this is a test run (workflow_dispatch on non-production ref)
+          if [[ "$EVENT_NAME" == "workflow_dispatch" ]] && [[ "$IS_PROD_TAG" != "true" ]]; then
+            IS_TEST_RUN=true
+          fi
           {
+            echo "build-desktop=$BUILD_DESKTOP"
             echo "build-web=$BUILD_WEB"
             echo "build-web-cloud=$BUILD_WEB_CLOUD"
             echo "build-backend=$BUILD_BACKEND"
@@ -79,9 +117,185 @@ jobs:
             echo "is-beta=$IS_BETA"
             echo "is-stable-standalone=$IS_STABLE_STANDALONE"
             echo "is-beta-standalone=$IS_BETA_STANDALONE"
+            echo "is-test-run=$IS_TEST_RUN"
             echo "sanitized-tag=$SANITIZED_TAG"
+            echo "short-sha=$SHORT_SHA"
           } >> "$GITHUB_OUTPUT"
 
+  check-version-tag:
+    runs-on: ubuntu-slim
+    timeout-minutes: 10
+    if: ${{ !startsWith(github.ref_name, 'nightly-latest') && github.event_name != 'workflow_dispatch' }}
+    steps:
+      - name: Checkout
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
+        with:
+          persist-credentials: false
+          fetch-depth: 0
+
+      - name: Setup uv
+        uses: astral-sh/setup-uv@ed21f2f24f8dd64503750218de024bcf64c7250a # ratchet:astral-sh/setup-uv@v7
+        with:
+          version: "0.9.9"
+          # NOTE: This isn't caching much and zizmor suggests this could be poisoned, so disable.
+          enable-cache: false
+
+      - name: Validate tag is versioned correctly
+        run: |
+          uv run --no-sync --with release-tag tag --check
+
+  notify-slack-on-tag-check-failure:
+    needs:
+      - check-version-tag
+    if: always() && needs.check-version-tag.result == 'failure' && github.event_name != 'workflow_dispatch'
+    runs-on: ubuntu-slim
+    timeout-minutes: 10
+    steps:
+      - name: Checkout
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
+        with:
+          persist-credentials: false
+
+      - name: Send Slack notification
+        uses: ./.github/actions/slack-notify
+        with:
+          webhook-url: ${{ secrets.MONITOR_DEPLOYMENTS_WEBHOOK }}
+          failed-jobs: "• check-version-tag"
+          title: "🚨 Version Tag Check Failed"
+          ref-name: ${{ github.ref_name }}
+
+  build-desktop:
+    needs: determine-builds
+    if: needs.determine-builds.outputs.build-desktop == 'true'
+    permissions:
+      contents: write
+      actions: read
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - platform: "macos-latest" # Build a universal image for macOS.
+            args: "--target universal-apple-darwin"
+          - platform: "ubuntu-24.04"
+            args: "--bundles deb,rpm"
+          - platform: "ubuntu-24.04-arm" # Only available in public repos.
+            args: "--bundles deb,rpm"
+          - platform: "windows-latest"
+            args: ""
+
+    runs-on: ${{ matrix.platform }}
+    timeout-minutes: 90
+    steps:
+      - uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6.0.1
+        with:
+          # NOTE: persist-credentials is needed for tauri-action to create GitHub releases.
+          persist-credentials: true # zizmor: ignore[artipacked]
+
+      - name: install dependencies (ubuntu only)
+        if: startsWith(matrix.platform, 'ubuntu-')
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y \
+            build-essential \
+            libglib2.0-dev \
+            libgirepository1.0-dev \
+            libgtk-3-dev \
+            libjavascriptcoregtk-4.1-dev \
+            libwebkit2gtk-4.1-dev \
+            libayatana-appindicator3-dev \
+            gobject-introspection \
+            pkg-config \
+            curl \
+            xdg-utils
+
+      - name: setup node
+        uses: actions/setup-node@395ad3262231945c25e8478fd5baf05154b1d79f # ratchet:actions/setup-node@v6.1.0
+        with:
+          node-version: 24
+          package-manager-cache: false
+
+      - name: install Rust stable
+        uses: dtolnay/rust-toolchain@6d9817901c499d6b02debbb57edb38d33daa680b # zizmor: ignore[impostor-commit]
+        with:
+          # Those targets are only used on macos runners so it's in an `if` to slightly speed up windows and linux builds.
+          targets: ${{ matrix.platform == 'macos-latest' && 'aarch64-apple-darwin,x86_64-apple-darwin' || '' }}
+
+      - name: install frontend dependencies
+        working-directory: ./desktop
+        run: npm install
+
+      - name: Inject version (Unix)
+        if: runner.os != 'Windows'
+        working-directory: ./desktop
+        env:
+          SHORT_SHA: ${{ needs.determine-builds.outputs.short-sha }}
+          IS_TEST_RUN: ${{ needs.determine-builds.outputs.is-test-run }}
+        run: |
+          if [ "${IS_TEST_RUN}" == "true" ]; then
+            VERSION="0.0.0-dev+${SHORT_SHA}"
+          else
+            VERSION="${GITHUB_REF_NAME#v}"
+          fi
+          echo "Injecting version: $VERSION"
+
+          # Update Cargo.toml
+          sed "s/^version = .*/version = \"$VERSION\"/" src-tauri/Cargo.toml > src-tauri/Cargo.toml.tmp
+          mv src-tauri/Cargo.toml.tmp src-tauri/Cargo.toml
+
+          # Update tauri.conf.json
+          jq --arg v "$VERSION" '.version = $v' src-tauri/tauri.conf.json > src-tauri/tauri.conf.json.tmp
+          mv src-tauri/tauri.conf.json.tmp src-tauri/tauri.conf.json
+
+          # Update package.json
+          jq --arg v "$VERSION" '.version = $v' package.json > package.json.tmp
+          mv package.json.tmp package.json
+
+          echo "Versions set to: $VERSION"
+
+      - name: Inject version (Windows)
+        if: runner.os == 'Windows'
+        working-directory: ./desktop
+        shell: pwsh
+        env:
+          IS_TEST_RUN: ${{ needs.determine-builds.outputs.is-test-run }}
+        run: |
+          # Windows MSI requires numeric-only build metadata, so we skip the SHA suffix
+          if ($env:IS_TEST_RUN -eq "true") {
+            $VERSION = "0.0.0"
+          } else {
+            # Strip 'v' prefix and any pre-release suffix (e.g., -beta.13) for MSI compatibility
+            $VERSION = "$env:GITHUB_REF_NAME" -replace '^v', '' -replace '-.*$', ''
+          }
+          Write-Host "Injecting version: $VERSION"
+
+          # Update Cargo.toml
+          $cargo = Get-Content src-tauri/Cargo.toml -Raw
+          $cargo = $cargo -replace '(?m)^version = .*', "version = `"$VERSION`""
+          Set-Content src-tauri/Cargo.toml $cargo -NoNewline
+
+          # Update tauri.conf.json
+          $json = Get-Content src-tauri/tauri.conf.json | ConvertFrom-Json
+          $json.version = $VERSION
+          $json | ConvertTo-Json -Depth 100 | Set-Content src-tauri/tauri.conf.json
+
+          # Update package.json
+          $pkg = Get-Content package.json | ConvertFrom-Json
+          $pkg.version = $VERSION
+          $pkg | ConvertTo-Json -Depth 100 | Set-Content package.json
+
+          Write-Host "Versions set to: $VERSION"
+
+      - uses: tauri-apps/tauri-action@19b93bb55601e3e373a93cfb6eb4242e45f5af20 # ratchet:tauri-apps/tauri-action@action-v0.6.0
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        with:
+          tagName: ${{ needs.determine-builds.outputs.is-test-run != 'true' && 'v__VERSION__' || format('v0.0.0-dev+{0}', needs.determine-builds.outputs.short-sha) }}
+          releaseName: ${{ needs.determine-builds.outputs.is-test-run != 'true' && 'v__VERSION__' || format('v0.0.0-dev+{0}', needs.determine-builds.outputs.short-sha) }}
+          releaseBody: "See the assets to download this version and install."
+          releaseDraft: true
+          prerelease: false
+          args: ${{ matrix.args }}
+
   build-web-amd64:
     needs: determine-builds
     if: needs.determine-builds.outputs.build-web == 'true'
@@ -90,6 +304,7 @@ jobs:
       - runner=4cpu-linux-x64
       - run-id=${{ github.run_id }}-web-amd64
       - extras=ecr-cache
+    timeout-minutes: 90
     outputs:
       digest: ${{ steps.build.outputs.digest }}
     env:
@@ -98,15 +313,15 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Docker meta
         id: meta
-        uses: docker/metadata-action@318604b99e75e41977312d83839a89be02ca4893 # ratchet:docker/metadata-action@v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # ratchet:docker/metadata-action@v5
         with:
-          images: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          images: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           flavor: |
             latest=false
 
@@ -136,7 +351,7 @@ jobs:
           cache-to: |
             type=inline
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache-amd64,mode=max
-          outputs: type=image,name=${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
+          outputs: type=image,name=${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   build-web-arm64:
@@ -147,6 +362,7 @@ jobs:
       - runner=4cpu-linux-arm64
       - run-id=${{ github.run_id }}-web-arm64
       - extras=ecr-cache
+    timeout-minutes: 90
     outputs:
       digest: ${{ steps.build.outputs.digest }}
     env:
@@ -155,15 +371,15 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Docker meta
         id: meta
-        uses: docker/metadata-action@318604b99e75e41977312d83839a89be02ca4893 # ratchet:docker/metadata-action@v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # ratchet:docker/metadata-action@v5
         with:
-          images: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          images: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           flavor: |
             latest=false
 
@@ -193,7 +409,7 @@ jobs:
           cache-to: |
             type=inline
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache-arm64,mode=max
-          outputs: type=image,name=${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
+          outputs: type=image,name=${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   merge-web:
@@ -206,6 +422,7 @@ jobs:
       - runner=2cpu-linux-x64
       - run-id=${{ github.run_id }}-merge-web
       - extras=ecr-cache
+    timeout-minutes: 90
     env:
       REGISTRY_IMAGE: onyxdotapp/onyx-web-server
     steps:
@@ -222,20 +439,20 @@ jobs:
 
       - name: Docker meta
         id: meta
-        uses: docker/metadata-action@318604b99e75e41977312d83839a89be02ca4893 # ratchet:docker/metadata-action@v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # ratchet:docker/metadata-action@v5
         with:
-          images: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          images: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           flavor: |
             latest=false
           tags: |
-            type=raw,value=${{ github.event_name == 'workflow_dispatch' && format('web-{0}', needs.determine-builds.outputs.sanitized-tag) || github.ref_name }}
-            type=raw,value=${{ github.event_name != 'workflow_dispatch' && needs.determine-builds.outputs.is-stable == 'true' && 'latest' || '' }}
-            type=raw,value=${{ github.event_name != 'workflow_dispatch' && env.EDGE_TAG == 'true' && 'edge' || '' }}
-            type=raw,value=${{ github.event_name != 'workflow_dispatch' && needs.determine-builds.outputs.is-beta == 'true' && 'beta' || '' }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run == 'true' && format('web-{0}', needs.determine-builds.outputs.sanitized-tag) || github.ref_name }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run != 'true' && needs.determine-builds.outputs.is-stable == 'true' && 'latest' || '' }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run != 'true' && env.EDGE_TAG == 'true' && 'edge' || '' }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run != 'true' && needs.determine-builds.outputs.is-beta == 'true' && 'beta' || '' }}
 
       - name: Create and push manifest
         env:
-          IMAGE_REPO: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          IMAGE_REPO: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           AMD64_DIGEST: ${{ needs.build-web-amd64.outputs.digest }}
           ARM64_DIGEST: ${{ needs.build-web-arm64.outputs.digest }}
           META_TAGS: ${{ steps.meta.outputs.tags }}
@@ -253,6 +470,7 @@ jobs:
       - runner=4cpu-linux-x64
       - run-id=${{ github.run_id }}-web-cloud-amd64
       - extras=ecr-cache
+    timeout-minutes: 90
     outputs:
       digest: ${{ steps.build.outputs.digest }}
     env:
@@ -261,15 +479,15 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Docker meta
         id: meta
-        uses: docker/metadata-action@318604b99e75e41977312d83839a89be02ca4893 # ratchet:docker/metadata-action@v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # ratchet:docker/metadata-action@v5
         with:
-          images: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          images: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           flavor: |
             latest=false
 
@@ -307,7 +525,7 @@ jobs:
           cache-to: |
             type=inline
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:cloudweb-cache-amd64,mode=max
-          outputs: type=image,name=${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
+          outputs: type=image,name=${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   build-web-cloud-arm64:
@@ -318,6 +536,7 @@ jobs:
       - runner=4cpu-linux-arm64
       - run-id=${{ github.run_id }}-web-cloud-arm64
       - extras=ecr-cache
+    timeout-minutes: 90
     outputs:
       digest: ${{ steps.build.outputs.digest }}
     env:
@@ -326,15 +545,15 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Docker meta
         id: meta
-        uses: docker/metadata-action@318604b99e75e41977312d83839a89be02ca4893 # ratchet:docker/metadata-action@v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # ratchet:docker/metadata-action@v5
         with:
-          images: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          images: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           flavor: |
             latest=false
 
@@ -372,7 +591,7 @@ jobs:
           cache-to: |
             type=inline
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:cloudweb-cache-arm64,mode=max
-          outputs: type=image,name=${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
+          outputs: type=image,name=${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   merge-web-cloud:
@@ -385,6 +604,7 @@ jobs:
       - runner=2cpu-linux-x64
       - run-id=${{ github.run_id }}-merge-web-cloud
       - extras=ecr-cache
+    timeout-minutes: 90
     env:
       REGISTRY_IMAGE: onyxdotapp/onyx-web-server-cloud
     steps:
@@ -401,17 +621,17 @@ jobs:
 
       - name: Docker meta
         id: meta
-        uses: docker/metadata-action@318604b99e75e41977312d83839a89be02ca4893 # ratchet:docker/metadata-action@v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # ratchet:docker/metadata-action@v5
         with:
-          images: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          images: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           flavor: |
             latest=false
           tags: |
-            type=raw,value=${{ github.event_name == 'workflow_dispatch' && format('web-cloud-{0}', needs.determine-builds.outputs.sanitized-tag) || github.ref_name }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run == 'true' && format('web-cloud-{0}', needs.determine-builds.outputs.sanitized-tag) || github.ref_name }}
 
       - name: Create and push manifest
         env:
-          IMAGE_REPO: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          IMAGE_REPO: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           AMD64_DIGEST: ${{ needs.build-web-cloud-amd64.outputs.digest }}
           ARM64_DIGEST: ${{ needs.build-web-cloud-arm64.outputs.digest }}
           META_TAGS: ${{ steps.meta.outputs.tags }}
@@ -429,6 +649,7 @@ jobs:
       - runner=2cpu-linux-x64
       - run-id=${{ github.run_id }}-backend-amd64
       - extras=ecr-cache
+    timeout-minutes: 90
     outputs:
       digest: ${{ steps.build.outputs.digest }}
     env:
@@ -437,15 +658,15 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Docker meta
         id: meta
-        uses: docker/metadata-action@318604b99e75e41977312d83839a89be02ca4893 # ratchet:docker/metadata-action@v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # ratchet:docker/metadata-action@v5
         with:
-          images: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          images: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           flavor: |
             latest=false
 
@@ -474,7 +695,7 @@ jobs:
           cache-to: |
             type=inline
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-amd64,mode=max
-          outputs: type=image,name=${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
+          outputs: type=image,name=${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   build-backend-arm64:
@@ -485,6 +706,7 @@ jobs:
       - runner=2cpu-linux-arm64
       - run-id=${{ github.run_id }}-backend-arm64
       - extras=ecr-cache
+    timeout-minutes: 90
     outputs:
       digest: ${{ steps.build.outputs.digest }}
     env:
@@ -493,15 +715,15 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Docker meta
         id: meta
-        uses: docker/metadata-action@318604b99e75e41977312d83839a89be02ca4893 # ratchet:docker/metadata-action@v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # ratchet:docker/metadata-action@v5
         with:
-          images: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          images: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           flavor: |
             latest=false
 
@@ -530,7 +752,7 @@ jobs:
           cache-to: |
             type=inline
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-arm64,mode=max
-          outputs: type=image,name=${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
+          outputs: type=image,name=${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   merge-backend:
@@ -543,6 +765,7 @@ jobs:
       - runner=2cpu-linux-x64
       - run-id=${{ github.run_id }}-merge-backend
       - extras=ecr-cache
+    timeout-minutes: 90
     env:
       REGISTRY_IMAGE: ${{ contains(github.ref_name, 'cloud') && 'onyxdotapp/onyx-backend-cloud' || 'onyxdotapp/onyx-backend' }}
     steps:
@@ -559,20 +782,20 @@ jobs:
 
       - name: Docker meta
         id: meta
-        uses: docker/metadata-action@318604b99e75e41977312d83839a89be02ca4893 # ratchet:docker/metadata-action@v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # ratchet:docker/metadata-action@v5
         with:
-          images: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          images: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           flavor: |
             latest=false
           tags: |
-            type=raw,value=${{ github.event_name == 'workflow_dispatch' && format('backend-{0}', needs.determine-builds.outputs.sanitized-tag) || github.ref_name }}
-            type=raw,value=${{ github.event_name != 'workflow_dispatch' && needs.determine-builds.outputs.is-stable-standalone == 'true' && 'latest' || '' }}
-            type=raw,value=${{ github.event_name != 'workflow_dispatch' && env.EDGE_TAG == 'true' && 'edge' || '' }}
-            type=raw,value=${{ github.event_name != 'workflow_dispatch' && needs.determine-builds.outputs.is-beta-standalone == 'true' && 'beta' || '' }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run == 'true' && format('backend-{0}', needs.determine-builds.outputs.sanitized-tag) || github.ref_name }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run != 'true' && needs.determine-builds.outputs.is-stable-standalone == 'true' && 'latest' || '' }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run != 'true' && env.EDGE_TAG == 'true' && 'edge' || '' }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run != 'true' && needs.determine-builds.outputs.is-beta-standalone == 'true' && 'beta' || '' }}
 
       - name: Create and push manifest
         env:
-          IMAGE_REPO: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          IMAGE_REPO: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           AMD64_DIGEST: ${{ needs.build-backend-amd64.outputs.digest }}
           ARM64_DIGEST: ${{ needs.build-backend-arm64.outputs.digest }}
           META_TAGS: ${{ steps.meta.outputs.tags }}
@@ -591,6 +814,7 @@ jobs:
       - run-id=${{ github.run_id }}-model-server-amd64
       - volume=40gb
       - extras=ecr-cache
+    timeout-minutes: 90
     outputs:
       digest: ${{ steps.build.outputs.digest }}
     env:
@@ -599,15 +823,15 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Docker meta
         id: meta
-        uses: docker/metadata-action@318604b99e75e41977312d83839a89be02ca4893 # ratchet:docker/metadata-action@v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # ratchet:docker/metadata-action@v5
         with:
-          images: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          images: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           flavor: |
             latest=false
 
@@ -640,7 +864,7 @@ jobs:
           cache-to: |
             type=inline
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-amd64,mode=max
-          outputs: type=image,name=${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
+          outputs: type=image,name=${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
           no-cache: ${{ env.EDGE_TAG != 'true' && vars.MODEL_SERVER_NO_CACHE == 'true' }}
           provenance: false
           sbom: false
@@ -654,6 +878,7 @@ jobs:
       - run-id=${{ github.run_id }}-model-server-arm64
       - volume=40gb
       - extras=ecr-cache
+    timeout-minutes: 90
     outputs:
       digest: ${{ steps.build.outputs.digest }}
     env:
@@ -662,15 +887,15 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Docker meta
         id: meta
-        uses: docker/metadata-action@318604b99e75e41977312d83839a89be02ca4893 # ratchet:docker/metadata-action@v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # ratchet:docker/metadata-action@v5
         with:
-          images: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          images: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           flavor: |
             latest=false
 
@@ -703,7 +928,7 @@ jobs:
           cache-to: |
             type=inline
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-arm64,mode=max
-          outputs: type=image,name=${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
+          outputs: type=image,name=${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }},push-by-digest=true,name-canonical=true,push=true
           no-cache: ${{ env.EDGE_TAG != 'true' && vars.MODEL_SERVER_NO_CACHE == 'true' }}
           provenance: false
           sbom: false
@@ -718,6 +943,7 @@ jobs:
       - runner=2cpu-linux-x64
       - run-id=${{ github.run_id }}-merge-model-server
       - extras=ecr-cache
+    timeout-minutes: 90
     env:
       REGISTRY_IMAGE: ${{ contains(github.ref_name, 'cloud') && 'onyxdotapp/onyx-model-server-cloud' || 'onyxdotapp/onyx-model-server' }}
     steps:
@@ -734,20 +960,20 @@ jobs:
 
       - name: Docker meta
         id: meta
-        uses: docker/metadata-action@318604b99e75e41977312d83839a89be02ca4893 # ratchet:docker/metadata-action@v5
+        uses: docker/metadata-action@c299e40c65443455700f0fdfc63efafe5b349051 # ratchet:docker/metadata-action@v5
         with:
-          images: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          images: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           flavor: |
             latest=false
           tags: |
-            type=raw,value=${{ github.event_name == 'workflow_dispatch' && format('model-server-{0}', needs.determine-builds.outputs.sanitized-tag) || github.ref_name }}
-            type=raw,value=${{ github.event_name != 'workflow_dispatch' && needs.determine-builds.outputs.is-stable-standalone == 'true' && 'latest' || '' }}
-            type=raw,value=${{ github.event_name != 'workflow_dispatch' && env.EDGE_TAG == 'true' && 'edge' || '' }}
-            type=raw,value=${{ github.event_name != 'workflow_dispatch' && needs.determine-builds.outputs.is-beta-standalone == 'true' && 'beta' || '' }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run == 'true' && format('model-server-{0}', needs.determine-builds.outputs.sanitized-tag) || github.ref_name }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run != 'true' && needs.determine-builds.outputs.is-stable-standalone == 'true' && 'latest' || '' }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run != 'true' && env.EDGE_TAG == 'true' && 'edge' || '' }}
+            type=raw,value=${{ needs.determine-builds.outputs.is-test-run != 'true' && needs.determine-builds.outputs.is-beta-standalone == 'true' && 'beta' || '' }}
 
       - name: Create and push manifest
         env:
-          IMAGE_REPO: ${{ github.event_name == 'workflow_dispatch' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
+          IMAGE_REPO: ${{ needs.determine-builds.outputs.is-test-run == 'true' && env.RUNS_ON_ECR_CACHE || env.REGISTRY_IMAGE }}
           AMD64_DIGEST: ${{ needs.build-model-server-amd64.outputs.digest }}
           ARM64_DIGEST: ${{ needs.build-model-server-arm64.outputs.digest }}
           META_TAGS: ${{ steps.meta.outputs.tags }}
@@ -767,6 +993,7 @@ jobs:
       - runner=2cpu-linux-arm64
       - run-id=${{ github.run_id }}-trivy-scan-web
       - extras=ecr-cache
+    timeout-minutes: 90
     env:
       REGISTRY_IMAGE: onyxdotapp/onyx-web-server
     steps:
@@ -779,7 +1006,7 @@ jobs:
           max_attempts: 3
           retry_wait_seconds: 10
           command: |
-            if [ "${{ github.event_name }}" == "workflow_dispatch" ]; then
+            if [ "${{ needs.determine-builds.outputs.is-test-run }}" == "true" ]; then
               SCAN_IMAGE="${{ env.RUNS_ON_ECR_CACHE }}:web-${{ needs.determine-builds.outputs.sanitized-tag }}"
             else
               SCAN_IMAGE="docker.io/${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}"
@@ -806,6 +1033,7 @@ jobs:
       - runner=2cpu-linux-arm64
       - run-id=${{ github.run_id }}-trivy-scan-web-cloud
       - extras=ecr-cache
+    timeout-minutes: 90
     env:
       REGISTRY_IMAGE: onyxdotapp/onyx-web-server-cloud
     steps:
@@ -818,7 +1046,7 @@ jobs:
           max_attempts: 3
           retry_wait_seconds: 10
           command: |
-            if [ "${{ github.event_name }}" == "workflow_dispatch" ]; then
+            if [ "${{ needs.determine-builds.outputs.is-test-run }}" == "true" ]; then
               SCAN_IMAGE="${{ env.RUNS_ON_ECR_CACHE }}:web-cloud-${{ needs.determine-builds.outputs.sanitized-tag }}"
             else
               SCAN_IMAGE="docker.io/${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}"
@@ -845,13 +1073,14 @@ jobs:
       - runner=2cpu-linux-arm64
       - run-id=${{ github.run_id }}-trivy-scan-backend
       - extras=ecr-cache
+    timeout-minutes: 90
     env:
       REGISTRY_IMAGE: ${{ contains(github.ref_name, 'cloud') && 'onyxdotapp/onyx-backend-cloud' || 'onyxdotapp/onyx-backend' }}
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -862,7 +1091,7 @@ jobs:
           max_attempts: 3
           retry_wait_seconds: 10
           command: |
-            if [ "${{ github.event_name }}" == "workflow_dispatch" ]; then
+            if [ "${{ needs.determine-builds.outputs.is-test-run }}" == "true" ]; then
               SCAN_IMAGE="${{ env.RUNS_ON_ECR_CACHE }}:backend-${{ needs.determine-builds.outputs.sanitized-tag }}"
             else
               SCAN_IMAGE="docker.io/${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}"
@@ -891,6 +1120,7 @@ jobs:
       - runner=2cpu-linux-arm64
       - run-id=${{ github.run_id }}-trivy-scan-model-server
       - extras=ecr-cache
+    timeout-minutes: 90
     env:
       REGISTRY_IMAGE: ${{ contains(github.ref_name, 'cloud') && 'onyxdotapp/onyx-model-server-cloud' || 'onyxdotapp/onyx-model-server' }}
     steps:
@@ -903,7 +1133,7 @@ jobs:
           max_attempts: 3
           retry_wait_seconds: 10
           command: |
-            if [ "${{ github.event_name }}" == "workflow_dispatch" ]; then
+            if [ "${{ needs.determine-builds.outputs.is-test-run }}" == "true" ]; then
               SCAN_IMAGE="${{ env.RUNS_ON_ECR_CACHE }}:model-server-${{ needs.determine-builds.outputs.sanitized-tag }}"
             else
               SCAN_IMAGE="docker.io/${{ env.REGISTRY_IMAGE }}:${{ github.ref_name }}"
@@ -922,6 +1152,8 @@ jobs:
 
   notify-slack-on-failure:
     needs:
+      - determine-builds
+      - build-desktop
       - build-web-amd64
       - build-web-arm64
       - merge-web
@@ -934,12 +1166,13 @@ jobs:
       - build-model-server-amd64
       - build-model-server-arm64
       - merge-model-server
-    if: always() && (needs.build-web-amd64.result == 'failure' || needs.build-web-arm64.result == 'failure' || needs.merge-web.result == 'failure' || needs.build-web-cloud-amd64.result == 'failure' || needs.build-web-cloud-arm64.result == 'failure' || needs.merge-web-cloud.result == 'failure' || needs.build-backend-amd64.result == 'failure' || needs.build-backend-arm64.result == 'failure' || needs.merge-backend.result == 'failure' || needs.build-model-server-amd64.result == 'failure' || needs.build-model-server-arm64.result == 'failure' || needs.merge-model-server.result == 'failure') && github.event_name != 'workflow_dispatch'
+    if: always() && (needs.build-desktop.result == 'failure' || needs.build-web-amd64.result == 'failure' || needs.build-web-arm64.result == 'failure' || needs.merge-web.result == 'failure' || needs.build-web-cloud-amd64.result == 'failure' || needs.build-web-cloud-arm64.result == 'failure' || needs.merge-web-cloud.result == 'failure' || needs.build-backend-amd64.result == 'failure' || needs.build-backend-arm64.result == 'failure' || needs.merge-backend.result == 'failure' || needs.build-model-server-amd64.result == 'failure' || needs.build-model-server-arm64.result == 'failure' || needs.merge-model-server.result == 'failure') && needs.determine-builds.outputs.is-test-run != 'true'
     # NOTE: Github-hosted runners have about 20s faster queue times and are preferred here.
     runs-on: ubuntu-slim
+    timeout-minutes: 90
     steps:
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -948,6 +1181,9 @@ jobs:
         shell: bash
         run: |
           FAILED_JOBS=""
+          if [ "${NEEDS_BUILD_DESKTOP_RESULT}" == "failure" ]; then
+            FAILED_JOBS="${FAILED_JOBS}• build-desktop\\n"
+          fi
           if [ "${NEEDS_BUILD_WEB_AMD64_RESULT}" == "failure" ]; then
             FAILED_JOBS="${FAILED_JOBS}• build-web-amd64\\n"
           fi
@@ -988,6 +1224,7 @@ jobs:
           FAILED_JOBS=$(printf '%s' "$FAILED_JOBS" | sed 's/\\n$//')
           echo "jobs=$FAILED_JOBS" >> "$GITHUB_OUTPUT"
         env:
+          NEEDS_BUILD_DESKTOP_RESULT: ${{ needs.build-desktop.result }}
           NEEDS_BUILD_WEB_AMD64_RESULT: ${{ needs.build-web-amd64.result }}
           NEEDS_BUILD_WEB_ARM64_RESULT: ${{ needs.build-web-arm64.result }}
           NEEDS_MERGE_WEB_RESULT: ${{ needs.merge-web.result }}

.github/workflows/docker-tag-beta.yml

@@ -18,6 +18,7 @@ jobs:
     # See https://runs-on.com/runners/linux/
     # use a lower powered instance since this just does i/o to docker hub
     runs-on: [runs-on, runner=2cpu-linux-x64, "run-id=${{ github.run_id }}-tag"]
+    timeout-minutes: 45
     steps:
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3

.github/workflows/docker-tag-latest.yml

@@ -18,6 +18,7 @@ jobs:
     # See https://runs-on.com/runners/linux/
     # use a lower powered instance since this just does i/o to docker hub
     runs-on: [runs-on, runner=2cpu-linux-x64, "run-id=${{ github.run_id }}-tag"]
+    timeout-minutes: 45
     steps:
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3

.github/workflows/helm-chart-releases.yml

@@ -12,9 +12,10 @@ jobs:
     permissions:
       contents: write
     runs-on: ubuntu-latest
+    timeout-minutes: 45
     steps:
       - name: Checkout
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           fetch-depth: 0
           persist-credentials: false
@@ -31,6 +32,7 @@ jobs:
           helm repo add cloudnative-pg https://cloudnative-pg.github.io/charts
           helm repo add ot-container-kit https://ot-container-kit.github.io/helm-charts
           helm repo add minio https://charts.min.io/
+          helm repo add code-interpreter https://onyx-dot-app.github.io/code-interpreter/
           helm repo update
 
       - name: Build chart dependencies

.github/workflows/merge-group.yml

@@ -0,0 +1,31 @@
+name: Merge Group-Specific
+
+on:
+  merge_group:
+
+permissions:
+  contents: read
+
+jobs:
+  # This job immediately succeeds to satisfy branch protection rules on merge_group events.
+  # There is a similarly named "required" job in pr-integration-tests.yml which runs the actual
+  # integration tests. That job runs on both pull_request and merge_group events, and this job
+  # exists solely to provide a fast-passing check with the same name for branch protection.
+  # The actual tests remain enforced on presubmit (pull_request events).
+  required:
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+    steps:
+      - name: Success
+        run: echo "Success"
+  # This job immediately succeeds to satisfy branch protection rules on merge_group events.
+  # There is a similarly named "playwright-required" job in pr-playwright-tests.yml which runs
+  # the actual playwright tests. That job runs on both pull_request and merge_group events, and
+  # this job exists solely to provide a fast-passing check with the same name for branch protection.
+  # The actual tests remain enforced on presubmit (pull_request events).
+  playwright-required:
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
+    steps:
+      - name: Success
+        run: echo "Success"

.github/workflows/nightly-close-stale-issues.yml

@@ -11,6 +11,7 @@ permissions:
 jobs:
   stale:
     runs-on: ubuntu-latest
+    timeout-minutes: 45
     steps:
       - uses: actions/stale@5f858e3efba33a5ca4407a664cc011ad407f2008 # ratchet:actions/stale@v10
         with:

.github/workflows/nightly-scan-licenses.yml

@@ -20,6 +20,7 @@ jobs:
   scan-licenses:
     # See https://runs-on.com/runners/linux/
     runs-on: [runs-on,runner=2cpu-linux-x64,"run-id=${{ github.run_id }}-scan-licenses"]
+    timeout-minutes: 45
     permissions:
       actions: read
       contents: read
@@ -27,12 +28,12 @@ jobs:
 
     steps:
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Set up Python
-        uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # ratchet:actions/setup-python@v6
+        uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # ratchet:actions/setup-python@v6
         with:
           python-version: '3.11'
           cache: 'pip'
@@ -89,6 +90,7 @@ jobs:
   scan-trivy:
     # See https://runs-on.com/runners/linux/
     runs-on: [runs-on,runner=2cpu-linux-x64,"run-id=${{ github.run_id }}-scan-trivy"]
+    timeout-minutes: 45
 
     steps:
     - name: Set up Docker Buildx

.github/workflows/pr-database-tests.yml

@@ -0,0 +1,62 @@
+name: Database Tests
+concurrency:
+  group: Database-Tests-${{ github.workflow }}-${{ github.head_ref || github.event.workflow_run.head_branch || github.run_id }}
+  cancel-in-progress: true
+
+on:
+  merge_group:
+  pull_request:
+    branches:
+      - main
+      - "release/**"
+  push:
+    tags:
+      - "v*.*.*"
+
+permissions:
+  contents: read
+
+jobs:
+  database-tests:
+    runs-on:
+      - runs-on
+      - runner=2cpu-linux-arm64
+      - "run-id=${{ github.run_id }}-database-tests"
+    timeout-minutes: 45
+    steps:
+      - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
+
+      - name: Checkout code
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
+        with:
+          persist-credentials: false
+
+      - name: Setup Python and Install Dependencies
+        uses: ./.github/actions/setup-python-and-install-dependencies
+        with:
+          requirements: |
+            backend/requirements/default.txt
+            backend/requirements/dev.txt
+
+      - name: Generate OpenAPI schema and Python client
+        shell: bash
+        run: |
+          ods openapi all
+
+      # needed for pulling external images otherwise, we hit the "Unauthenticated users" limit
+      # https://docs.docker.com/docker-hub/usage/
+      - name: Login to Docker Hub
+        uses: docker/login-action@5e57cd118135c172c3672efd75eb46360885c0ef # ratchet:docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_TOKEN }}
+
+      - name: Start Docker containers
+        working-directory: ./deployment/docker_compose
+        run: |
+          docker compose -f docker-compose.yml -f docker-compose.dev.yml up -d \
+            relational_db
+
+      - name: Run Database Tests
+        working-directory: ./backend
+        run: pytest -m alembic tests/integration/tests/migrations/

.github/workflows/pr-external-dependency-unit-tests.yml

@@ -7,17 +7,22 @@ on:
   merge_group:
   pull_request:
     branches: [main]
+  push:
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
 
 env:
-  # AWS
-  S3_AWS_ACCESS_KEY_ID: ${{ secrets.S3_AWS_ACCESS_KEY_ID }}
-  S3_AWS_SECRET_ACCESS_KEY: ${{ secrets.S3_AWS_SECRET_ACCESS_KEY }}
+  # AWS credentials for S3-specific test
+  S3_AWS_ACCESS_KEY_ID_FOR_TEST: ${{ secrets.S3_AWS_ACCESS_KEY_ID }}
+  S3_AWS_SECRET_ACCESS_KEY_FOR_TEST: ${{ secrets.S3_AWS_SECRET_ACCESS_KEY }}
 
   # MinIO
   S3_ENDPOINT_URL: "http://localhost:9004"
+  S3_AWS_ACCESS_KEY_ID: "minioadmin"
+  S3_AWS_SECRET_ACCESS_KEY: "minioadmin"
 
   # Confluence
   CONFLUENCE_TEST_SPACE_URL: ${{ vars.CONFLUENCE_TEST_SPACE_URL }}
@@ -27,23 +32,29 @@ env:
   CONFLUENCE_ACCESS_TOKEN: ${{ secrets.CONFLUENCE_ACCESS_TOKEN }}
   CONFLUENCE_ACCESS_TOKEN_SCOPED: ${{ secrets.CONFLUENCE_ACCESS_TOKEN_SCOPED }}
 
+  # Jira
+  JIRA_ADMIN_API_TOKEN: ${{ secrets.JIRA_ADMIN_API_TOKEN }}
+
   # LLMs
   OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}
   ANTHROPIC_API_KEY: ${{ secrets.ANTHROPIC_API_KEY }}
+  VERTEX_CREDENTIALS: ${{ secrets.VERTEX_CREDENTIALS }}
+  VERTEX_LOCATION: ${{ vars.VERTEX_LOCATION }}
 
   # Code Interpreter
   # TODO: debug why this is failing and enable
-  # CODE_INTERPRETER_BASE_URL: http://localhost:8000
+  CODE_INTERPRETER_BASE_URL: http://localhost:8000
 
 jobs:
   discover-test-dirs:
     # NOTE: Github-hosted runners have about 20s faster queue times and are preferred here.
     runs-on: ubuntu-slim
+    timeout-minutes: 45
     outputs:
       test-dirs: ${{ steps.set-matrix.outputs.test-dirs }}
     steps:
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -62,6 +73,7 @@ jobs:
       - runner=2cpu-linux-arm64
       - ${{ format('run-id={0}-external-dependency-unit-tests-job-{1}', github.run_id, strategy['job-index']) }}
       - extras=s3-cache
+    timeout-minutes: 45
     strategy:
       fail-fast: false
       matrix:
@@ -70,17 +82,23 @@ jobs:
     env:
       PYTHONPATH: ./backend
       MODEL_SERVER_HOST: "disabled"
+      DISABLE_TELEMETRY: "true"
 
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Setup Python and Install Dependencies
         uses: ./.github/actions/setup-python-and-install-dependencies
+        with:
+          requirements: |
+            backend/requirements/default.txt
+            backend/requirements/dev.txt
+            backend/requirements/ee.txt
 
       - name: Setup Playwright
         uses: ./.github/actions/setup-playwright
@@ -94,6 +112,13 @@ jobs:
           username: ${{ secrets.DOCKER_USERNAME }}
           password: ${{ secrets.DOCKER_TOKEN }}
 
+      - name: Create .env file for Docker Compose
+        run: |
+          cat <<EOF > deployment/docker_compose/.env
+          CODE_INTERPRETER_BETA_ENABLED=true
+          DISABLE_TELEMETRY=true
+          EOF
+
       - name: Set up Standard Dependencies
         run: |
           cd deployment/docker_compose
@@ -125,3 +150,30 @@ jobs:
             -xv \
             --ff \
             backend/tests/external_dependency_unit/${TEST_DIR}
+
+      - name: Collect Docker logs on failure
+        if: failure()
+        run: |
+          mkdir -p docker-logs
+          cd deployment/docker_compose
+
+          # Get list of running containers
+          containers=$(docker compose -f docker-compose.yml -f docker-compose.dev.yml ps -q)
+
+          # Collect logs from each container
+          for container in $containers; do
+            container_name=$(docker inspect --format='{{.Name}}' $container | sed 's/^\///')
+            echo "Collecting logs from $container_name..."
+            docker logs $container > ../../docker-logs/${container_name}.log 2>&1
+          done
+
+          cd ../..
+          echo "Docker logs collected in docker-logs directory"
+
+      - name: Upload Docker logs
+        if: failure()
+        uses: actions/upload-artifact@330a01c490aca151604b8cf639adc76d48f6c5d4 # ratchet:actions/upload-artifact@v5
+        with:
+          name: docker-logs-${{ matrix.test-dir }}
+          path: docker-logs/
+          retention-days: 7

.github/workflows/pr-helm-chart-testing.yml

@@ -6,8 +6,11 @@ concurrency:
 on:
   merge_group:
   pull_request:
-    branches: [ main ]
-  workflow_dispatch:  # Allows manual triggering
+    branches: [main]
+  push:
+    tags:
+      - "v*.*.*"
+  workflow_dispatch: # Allows manual triggering
 
 permissions:
   contents: read
@@ -15,223 +18,233 @@ permissions:
 jobs:
   helm-chart-check:
     # See https://runs-on.com/runners/linux/
-    runs-on: [runs-on,runner=8cpu-linux-x64,hdd=256,"run-id=${{ github.run_id }}-helm-chart-check"]
+    runs-on:
+      [
+        runs-on,
+        runner=8cpu-linux-x64,
+        hdd=256,
+        "run-id=${{ github.run_id }}-helm-chart-check",
+      ]
+    timeout-minutes: 45
 
     # fetch-depth 0 is required for helm/chart-testing-action
     steps:
-    - name: Checkout code
-      uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
-      with:
-        fetch-depth: 0
-        persist-credentials: false
+      - name: Checkout code
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
+        with:
+          fetch-depth: 0
+          persist-credentials: false
 
-    - name: Set up Helm
-      uses: azure/setup-helm@1a275c3b69536ee54be43f2070a358922e12c8d4 # ratchet:azure/setup-helm@v4.3.1
-      with:
-        version: v3.19.0
+      - name: Set up Helm
+        uses: azure/setup-helm@1a275c3b69536ee54be43f2070a358922e12c8d4 # ratchet:azure/setup-helm@v4.3.1
+        with:
+          version: v3.19.0
 
-    - name: Set up chart-testing
-      uses: helm/chart-testing-action@6ec842c01de15ebb84c8627d2744a0c2f2755c9f # ratchet:helm/chart-testing-action@v2.8.0
+      - name: Set up chart-testing
+        # NOTE: This is Jamison's patch from https://github.com/helm/chart-testing-action/pull/194
+        uses: helm/chart-testing-action@8958a6ac472cbd8ee9a8fbb6f1acbc1b0e966e44 # zizmor: ignore[impostor-commit]
+        with:
+          uv_version: "0.9.9"
 
-    # even though we specify chart-dirs in ct.yaml, it isn't used by ct for the list-changed command...
-    - name: Run chart-testing (list-changed)
-      id: list-changed
-      env:
-        DEFAULT_BRANCH: ${{ github.event.repository.default_branch }}
-      run: |
-        echo "default_branch: ${DEFAULT_BRANCH}"
-        changed=$(ct list-changed --remote origin --target-branch ${DEFAULT_BRANCH} --chart-dirs deployment/helm/charts)
-        echo "list-changed output: $changed"
-        if [[ -n "$changed" ]]; then
-          echo "changed=true" >> "$GITHUB_OUTPUT"
-        fi
-
-    # uncomment to force run chart-testing
-#     - name: Force run chart-testing (list-changed)
-#       id: list-changed
-#       run: echo "changed=true" >> $GITHUB_OUTPUT
-
-    # lint all charts if any changes were detected
-    - name: Run chart-testing (lint)
-      if: steps.list-changed.outputs.changed == 'true'
-      run: ct lint --config ct.yaml --all
-      # the following would lint only changed charts, but linting isn't expensive
-      # run: ct lint --config ct.yaml --target-branch ${{ github.event.repository.default_branch }}
-
-    - name: Create kind cluster
-      if: steps.list-changed.outputs.changed == 'true'
-      uses: helm/kind-action@92086f6be054225fa813e0a4b13787fc9088faab # ratchet:helm/kind-action@v1.13.0
-
-    - name: Pre-install cluster status check
-      if: steps.list-changed.outputs.changed == 'true'
-      run: |
-        echo "=== Pre-install Cluster Status ==="
-        kubectl get nodes -o wide
-        kubectl get pods --all-namespaces
-        kubectl get storageclass
-
-    - name: Add Helm repositories and update
-      if: steps.list-changed.outputs.changed == 'true'
-      run: |
-        echo "=== Adding Helm repositories ==="
-        helm repo add ingress-nginx https://kubernetes.github.io/ingress-nginx
-        helm repo add vespa https://onyx-dot-app.github.io/vespa-helm-charts
-        helm repo add cloudnative-pg https://cloudnative-pg.github.io/charts
-        helm repo add ot-container-kit https://ot-container-kit.github.io/helm-charts
-        helm repo add minio https://charts.min.io/
-        helm repo update
-
-    - name: Install Redis operator
-      if: steps.list-changed.outputs.changed == 'true'
-      shell: bash
-      run: |
-        echo "=== Installing redis-operator CRDs ==="
-        helm upgrade --install redis-operator ot-container-kit/redis-operator \
-          --namespace redis-operator --create-namespace --wait --timeout 300s
-
-    - name: Pre-pull required images
-      if: steps.list-changed.outputs.changed == 'true'
-      run: |
-        echo "=== Pre-pulling required images to avoid timeout ==="
-        KIND_CLUSTER=$(kubectl config current-context | sed 's/kind-//')
-        echo "Kind cluster: $KIND_CLUSTER"
-
-        IMAGES=(
-          "ghcr.io/cloudnative-pg/cloudnative-pg:1.27.0"
-          "quay.io/opstree/redis:v7.0.15"
-          "docker.io/onyxdotapp/onyx-web-server:latest"
-        )
-
-        for image in "${IMAGES[@]}"; do
-          echo "Pre-pulling $image"
-          if docker pull "$image"; then
-            kind load docker-image "$image" --name "$KIND_CLUSTER" || echo "Failed to load $image into kind"
-          else
-            echo "Failed to pull $image"
+      # even though we specify chart-dirs in ct.yaml, it isn't used by ct for the list-changed command...
+      - name: Run chart-testing (list-changed)
+        id: list-changed
+        env:
+          DEFAULT_BRANCH: ${{ github.event.repository.default_branch }}
+        run: |
+          echo "default_branch: ${DEFAULT_BRANCH}"
+          changed=$(ct list-changed --remote origin --target-branch ${DEFAULT_BRANCH} --chart-dirs deployment/helm/charts)
+          echo "list-changed output: $changed"
+          if [[ -n "$changed" ]]; then
+            echo "changed=true" >> "$GITHUB_OUTPUT"
           fi
-        done
 
-        echo "=== Images loaded into Kind cluster ==="
-        docker exec "$KIND_CLUSTER"-control-plane crictl images | grep -E "(cloudnative-pg|redis|onyx)" || echo "Some images may still be loading..."
+      # uncomment to force run chart-testing
+      #     - name: Force run chart-testing (list-changed)
+      #       id: list-changed
+      #       run: echo "changed=true" >> $GITHUB_OUTPUT
+      # lint all charts if any changes were detected
+      - name: Run chart-testing (lint)
+        if: steps.list-changed.outputs.changed == 'true'
+        run: ct lint --config ct.yaml --all
+        # the following would lint only changed charts, but linting isn't expensive
+        # run: ct lint --config ct.yaml --target-branch ${{ github.event.repository.default_branch }}
 
-    - name: Validate chart dependencies
-      if: steps.list-changed.outputs.changed == 'true'
-      run: |
-        echo "=== Validating chart dependencies ==="
-        cd deployment/helm/charts/onyx
-        helm dependency update
-        helm lint .
+      - name: Create kind cluster
+        if: steps.list-changed.outputs.changed == 'true'
+        uses: helm/kind-action@92086f6be054225fa813e0a4b13787fc9088faab # ratchet:helm/kind-action@v1.13.0
 
-    - name: Run chart-testing (install) with enhanced monitoring
-      timeout-minutes: 25
-      if: steps.list-changed.outputs.changed == 'true'
-      run: |
-        echo "=== Starting chart installation with monitoring ==="
+      - name: Pre-install cluster status check
+        if: steps.list-changed.outputs.changed == 'true'
+        run: |
+          echo "=== Pre-install Cluster Status ==="
+          kubectl get nodes -o wide
+          kubectl get pods --all-namespaces
+          kubectl get storageclass
 
-        # Function to monitor cluster state
-        monitor_cluster() {
-          while true; do
-            echo "=== Cluster Status Check at $(date) ==="
-            # Only show non-running pods to reduce noise
-            NON_RUNNING_PODS=$(kubectl get pods --all-namespaces --field-selector=status.phase!=Running,status.phase!=Succeeded --no-headers 2>/dev/null | wc -l)
-            if [ "$NON_RUNNING_PODS" -gt 0 ]; then
-              echo "Non-running pods:"
-              kubectl get pods --all-namespaces --field-selector=status.phase!=Running,status.phase!=Succeeded
+      - name: Add Helm repositories and update
+        if: steps.list-changed.outputs.changed == 'true'
+        run: |
+          echo "=== Adding Helm repositories ==="
+          helm repo add ingress-nginx https://kubernetes.github.io/ingress-nginx
+          helm repo add vespa https://onyx-dot-app.github.io/vespa-helm-charts
+          helm repo add cloudnative-pg https://cloudnative-pg.github.io/charts
+          helm repo add ot-container-kit https://ot-container-kit.github.io/helm-charts
+          helm repo add minio https://charts.min.io/
+          helm repo add code-interpreter https://onyx-dot-app.github.io/code-interpreter/
+          helm repo update
+
+      - name: Install Redis operator
+        if: steps.list-changed.outputs.changed == 'true'
+        shell: bash
+        run: |
+          echo "=== Installing redis-operator CRDs ==="
+          helm upgrade --install redis-operator ot-container-kit/redis-operator \
+            --namespace redis-operator --create-namespace --wait --timeout 300s
+
+      - name: Pre-pull required images
+        if: steps.list-changed.outputs.changed == 'true'
+        run: |
+          echo "=== Pre-pulling required images to avoid timeout ==="
+          KIND_CLUSTER=$(kubectl config current-context | sed 's/kind-//')
+          echo "Kind cluster: $KIND_CLUSTER"
+
+          IMAGES=(
+            "ghcr.io/cloudnative-pg/cloudnative-pg:1.27.0"
+            "quay.io/opstree/redis:v7.0.15"
+            "docker.io/onyxdotapp/onyx-web-server:latest"
+          )
+
+          for image in "${IMAGES[@]}"; do
+            echo "Pre-pulling $image"
+            if docker pull "$image"; then
+              kind load docker-image "$image" --name "$KIND_CLUSTER" || echo "Failed to load $image into kind"
             else
-              echo "All pods running successfully"
+              echo "Failed to pull $image"
             fi
-            # Only show recent events if there are issues
-            RECENT_EVENTS=$(kubectl get events --sort-by=.lastTimestamp --all-namespaces --field-selector=type!=Normal 2>/dev/null | tail -5)
-            if [ -n "$RECENT_EVENTS" ]; then
-              echo "Recent warnings/errors:"
-              echo "$RECENT_EVENTS"
-            fi
-            sleep 60
           done
-        }
 
-        # Start monitoring in background
-        monitor_cluster &
-        MONITOR_PID=$!
+          echo "=== Images loaded into Kind cluster ==="
+          docker exec "$KIND_CLUSTER"-control-plane crictl images | grep -E "(cloudnative-pg|redis|onyx)" || echo "Some images may still be loading..."
 
-        # Set up cleanup
-        cleanup() {
-          echo "=== Cleaning up monitoring process ==="
-          kill $MONITOR_PID 2>/dev/null || true
+      - name: Validate chart dependencies
+        if: steps.list-changed.outputs.changed == 'true'
+        run: |
+          echo "=== Validating chart dependencies ==="
+          cd deployment/helm/charts/onyx
+          helm dependency update
+          helm lint .
+
+      - name: Run chart-testing (install) with enhanced monitoring
+        timeout-minutes: 25
+        if: steps.list-changed.outputs.changed == 'true'
+        run: |
+          echo "=== Starting chart installation with monitoring ==="
+
+          # Function to monitor cluster state
+          monitor_cluster() {
+            while true; do
+              echo "=== Cluster Status Check at $(date) ==="
+              # Only show non-running pods to reduce noise
+              NON_RUNNING_PODS=$(kubectl get pods --all-namespaces --field-selector=status.phase!=Running,status.phase!=Succeeded --no-headers 2>/dev/null | wc -l)
+              if [ "$NON_RUNNING_PODS" -gt 0 ]; then
+                echo "Non-running pods:"
+                kubectl get pods --all-namespaces --field-selector=status.phase!=Running,status.phase!=Succeeded
+              else
+                echo "All pods running successfully"
+              fi
+              # Only show recent events if there are issues
+              RECENT_EVENTS=$(kubectl get events --sort-by=.lastTimestamp --all-namespaces --field-selector=type!=Normal 2>/dev/null | tail -5)
+              if [ -n "$RECENT_EVENTS" ]; then
+                echo "Recent warnings/errors:"
+                echo "$RECENT_EVENTS"
+              fi
+              sleep 60
+            done
+          }
+
+          # Start monitoring in background
+          monitor_cluster &
+          MONITOR_PID=$!
+
+          # Set up cleanup
+          cleanup() {
+            echo "=== Cleaning up monitoring process ==="
+            kill $MONITOR_PID 2>/dev/null || true
+            echo "=== Final cluster state ==="
+            kubectl get pods --all-namespaces
+            kubectl get events --all-namespaces --sort-by=.lastTimestamp | tail -20
+          }
+
+          # Trap cleanup on exit
+          trap cleanup EXIT
+
+          # Run the actual installation with detailed logging
+          echo "=== Starting ct install ==="
+          set +e
+          ct install --all \
+            --helm-extra-set-args="\
+              --set=nginx.enabled=false \
+              --set=minio.enabled=false \
+              --set=vespa.enabled=false \
+              --set=slackbot.enabled=false \
+              --set=postgresql.enabled=true \
+              --set=postgresql.nameOverride=cloudnative-pg \
+              --set=postgresql.cluster.storage.storageClass=standard \
+              --set=redis.enabled=true \
+              --set=redis.storageSpec.volumeClaimTemplate.spec.storageClassName=standard \
+              --set=webserver.replicaCount=1 \
+              --set=api.replicaCount=0 \
+              --set=inferenceCapability.replicaCount=0 \
+              --set=indexCapability.replicaCount=0 \
+              --set=celery_beat.replicaCount=0 \
+              --set=celery_worker_heavy.replicaCount=0 \
+              --set=celery_worker_docfetching.replicaCount=0 \
+              --set=celery_worker_docprocessing.replicaCount=0 \
+              --set=celery_worker_light.replicaCount=0 \
+              --set=celery_worker_monitoring.replicaCount=0 \
+              --set=celery_worker_primary.replicaCount=0 \
+              --set=celery_worker_user_file_processing.replicaCount=0 \
+              --set=celery_worker_user_files_indexing.replicaCount=0" \
+            --helm-extra-args="--timeout 900s --debug" \
+            --debug --config ct.yaml
+          CT_EXIT=$?
+          set -e
+
+          if [[ $CT_EXIT -ne 0 ]]; then
+            echo "ct install failed with exit code $CT_EXIT"
+            exit $CT_EXIT
+          else
+            echo "=== Installation completed successfully ==="
+          fi
+
+          kubectl get pods --all-namespaces
+
+      - name: Post-install verification
+        if: steps.list-changed.outputs.changed == 'true'
+        run: |
+          echo "=== Post-install verification ==="
+          kubectl get pods --all-namespaces
+          kubectl get services --all-namespaces
+          # Only show issues if they exist
+          kubectl describe pods --all-namespaces | grep -A 5 -B 2 "Failed\|Error\|Warning" || echo "No pod issues found"
+
+      - name: Cleanup on failure
+        if: failure() && steps.list-changed.outputs.changed == 'true'
+        run: |
+          echo "=== Cleanup on failure ==="
           echo "=== Final cluster state ==="
           kubectl get pods --all-namespaces
-          kubectl get events --all-namespaces --sort-by=.lastTimestamp | tail -20
-        }
+          kubectl get events --all-namespaces --sort-by=.lastTimestamp | tail -10
 
-        # Trap cleanup on exit
-        trap cleanup EXIT
+          echo "=== Pod descriptions for debugging ==="
+          kubectl describe pods --all-namespaces | grep -A 10 -B 3 "Failed\|Error\|Warning\|Pending" || echo "No problematic pods found"
 
-        # Run the actual installation with detailed logging
-        echo "=== Starting ct install ==="
-        set +e
-        ct install --all \
-          --helm-extra-set-args="\
-            --set=nginx.enabled=false \
-            --set=minio.enabled=false \
-            --set=vespa.enabled=false \
-            --set=slackbot.enabled=false \
-            --set=postgresql.enabled=true \
-            --set=postgresql.nameOverride=cloudnative-pg \
-            --set=postgresql.cluster.storage.storageClass=standard \
-            --set=redis.enabled=true \
-            --set=redis.storageSpec.volumeClaimTemplate.spec.storageClassName=standard \
-            --set=webserver.replicaCount=1 \
-            --set=api.replicaCount=0 \
-            --set=inferenceCapability.replicaCount=0 \
-            --set=indexCapability.replicaCount=0 \
-            --set=celery_beat.replicaCount=0 \
-            --set=celery_worker_heavy.replicaCount=0 \
-            --set=celery_worker_docfetching.replicaCount=0 \
-            --set=celery_worker_docprocessing.replicaCount=0 \
-            --set=celery_worker_light.replicaCount=0 \
-            --set=celery_worker_monitoring.replicaCount=0 \
-            --set=celery_worker_primary.replicaCount=0 \
-            --set=celery_worker_user_file_processing.replicaCount=0 \
-            --set=celery_worker_user_files_indexing.replicaCount=0" \
-          --helm-extra-args="--timeout 900s --debug" \
-          --debug --config ct.yaml
-        CT_EXIT=$?
-        set -e
+          echo "=== Recent logs for debugging ==="
+          kubectl logs --all-namespaces --tail=50 | grep -i "error\|timeout\|failed\|pull" || echo "No error logs found"
 
-        if [[ $CT_EXIT -ne 0 ]]; then
-          echo "ct install failed with exit code $CT_EXIT"
-          exit $CT_EXIT
-        else
-          echo "=== Installation completed successfully ==="
-        fi
-
-        kubectl get pods --all-namespaces
-
-    - name: Post-install verification
-      if: steps.list-changed.outputs.changed == 'true'
-      run: |
-        echo "=== Post-install verification ==="
-        kubectl get pods --all-namespaces
-        kubectl get services --all-namespaces
-        # Only show issues if they exist
-        kubectl describe pods --all-namespaces | grep -A 5 -B 2 "Failed\|Error\|Warning" || echo "No pod issues found"
-
-    - name: Cleanup on failure
-      if: failure() && steps.list-changed.outputs.changed == 'true'
-      run: |
-        echo "=== Cleanup on failure ==="
-        echo "=== Final cluster state ==="
-        kubectl get pods --all-namespaces
-        kubectl get events --all-namespaces --sort-by=.lastTimestamp | tail -10
-
-        echo "=== Pod descriptions for debugging ==="
-        kubectl describe pods --all-namespaces | grep -A 10 -B 3 "Failed\|Error\|Warning\|Pending" || echo "No problematic pods found"
-
-        echo "=== Recent logs for debugging ==="
-        kubectl logs --all-namespaces --tail=50 | grep -i "error\|timeout\|failed\|pull" || echo "No error logs found"
-
-        echo "=== Helm releases ==="
-        helm list --all-namespaces
-      # the following would install only changed charts, but we only have one chart so
-      # don't worry about that for now
-      # run: ct install --target-branch ${{ github.event.repository.default_branch }}
+          echo "=== Helm releases ==="
+          helm list --all-namespaces
+        # the following would install only changed charts, but we only have one chart so
+        # don't worry about that for now
+        # run: ct install --target-branch ${{ github.event.repository.default_branch }}

.github/workflows/pr-integration-tests.yml

@@ -9,6 +9,9 @@ on:
     branches:
       - main
       - "release/**"
+  push:
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
@@ -30,16 +33,22 @@ env:
   PERM_SYNC_SHAREPOINT_CERTIFICATE_PASSWORD: ${{ secrets.PERM_SYNC_SHAREPOINT_CERTIFICATE_PASSWORD }}
   PERM_SYNC_SHAREPOINT_DIRECTORY_ID: ${{ secrets.PERM_SYNC_SHAREPOINT_DIRECTORY_ID }}
   EXA_API_KEY: ${{ secrets.EXA_API_KEY }}
+  GITHUB_PERMISSION_SYNC_TEST_ACCESS_TOKEN: ${{ secrets.ONYX_GITHUB_PERMISSION_SYNC_TEST_ACCESS_TOKEN }}
+  GITHUB_PERMISSION_SYNC_TEST_ACCESS_TOKEN_CLASSIC: ${{ secrets.ONYX_GITHUB_PERMISSION_SYNC_TEST_ACCESS_TOKEN_CLASSIC }}
+  GITHUB_ADMIN_EMAIL: ${{ secrets.ONYX_GITHUB_ADMIN_EMAIL }}
+  GITHUB_TEST_USER_1_EMAIL: ${{ secrets.ONYX_GITHUB_TEST_USER_1_EMAIL }}
+  GITHUB_TEST_USER_2_EMAIL: ${{ secrets.ONYX_GITHUB_TEST_USER_2_EMAIL }}
 
 jobs:
   discover-test-dirs:
     # NOTE: Github-hosted runners have about 20s faster queue times and are preferred here.
     runs-on: ubuntu-slim
+    timeout-minutes: 45
     outputs:
       test-dirs: ${{ steps.set-matrix.outputs.test-dirs }}
     steps:
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -47,7 +56,7 @@ jobs:
         id: set-matrix
         run: |
           # Find all leaf-level directories in both test directories
-          tests_dirs=$(find backend/tests/integration/tests -mindepth 1 -maxdepth 1 -type d ! -name "__pycache__" -exec basename {} \; | sort)
+          tests_dirs=$(find backend/tests/integration/tests -mindepth 1 -maxdepth 1 -type d ! -name "__pycache__" ! -name "mcp" -exec basename {} \; | sort)
           connector_dirs=$(find backend/tests/integration/connector_job_tests -mindepth 1 -maxdepth 1 -type d ! -name "__pycache__" -exec basename {} \; | sort)
 
           # Create JSON array with directory info
@@ -63,16 +72,36 @@ jobs:
           all_dirs="[${all_dirs%,}]"
           echo "test-dirs=$all_dirs" >> $GITHUB_OUTPUT
 
-
   build-backend-image:
-    runs-on: [runs-on, runner=1cpu-linux-arm64, "run-id=${{ github.run_id }}-build-backend-image", "extras=ecr-cache"]
+    runs-on:
+      [
+        runs-on,
+        runner=1cpu-linux-arm64,
+        "run-id=${{ github.run_id }}-build-backend-image",
+        "extras=ecr-cache",
+      ]
+    timeout-minutes: 45
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -93,22 +122,46 @@ jobs:
           push: true
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:integration-test-backend-test-${{ github.run_id }}
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache
             type=registry,ref=onyxdotapp/onyx-backend:latest
           cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache,mode=max
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
-
   build-model-server-image:
-    runs-on: [runs-on, runner=1cpu-linux-arm64, "run-id=${{ github.run_id }}-build-model-server-image", "extras=ecr-cache"]
+    runs-on:
+      [
+        runs-on,
+        runner=1cpu-linux-arm64,
+        "run-id=${{ github.run_id }}-build-model-server-image",
+        "extras=ecr-cache",
+      ]
+    timeout-minutes: 45
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -129,17 +182,28 @@ jobs:
           push: true
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:integration-test-model-server-test-${{ github.run_id }}
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache
             type=registry,ref=onyxdotapp/onyx-model-server:latest
-          cache-to: type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache,mode=max
-
+          cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache,mode=max
 
   build-integration-image:
-    runs-on: [runs-on, runner=2cpu-linux-arm64, "run-id=${{ github.run_id }}-build-integration-image", "extras=ecr-cache"]
+    runs-on:
+      [
+        runs-on,
+        runner=2cpu-linux-arm64,
+        "run-id=${{ github.run_id }}-build-integration-image",
+        "extras=ecr-cache",
+      ]
+    timeout-minutes: 45
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -155,16 +219,40 @@ jobs:
           username: ${{ secrets.DOCKER_USERNAME }}
           password: ${{ secrets.DOCKER_TOKEN }}
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Build and push integration test image with Docker Bake
         env:
           INTEGRATION_REPOSITORY: ${{ env.RUNS_ON_ECR_CACHE }}
           TAG: integration-test-${{ github.run_id }}
+          CACHE_SUFFIX: ${{ steps.format-branch.outputs.cache-suffix }}
+          HEAD_SHA: ${{ github.event.pull_request.head.sha || github.sha }}
         run: |
-          cd backend && docker buildx bake --push \
+          docker buildx bake --push \
+            --set backend.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${HEAD_SHA} \
+            --set backend.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${CACHE_SUFFIX} \
             --set backend.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache \
             --set backend.cache-from=type=registry,ref=onyxdotapp/onyx-backend:latest \
+            --set backend.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${HEAD_SHA},mode=max \
+            --set backend.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${CACHE_SUFFIX},mode=max \
             --set backend.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache,mode=max \
+            --set integration.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${HEAD_SHA} \
+            --set integration.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${CACHE_SUFFIX} \
             --set integration.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache \
+            --set integration.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${HEAD_SHA},mode=max \
+            --set integration.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${CACHE_SUFFIX},mode=max \
             --set integration.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache,mode=max \
             integration
 
@@ -181,6 +269,7 @@ jobs:
       - runner=4cpu-linux-arm64
       - ${{ format('run-id={0}-integration-tests-job-{1}', github.run_id, strategy['job-index']) }}
       - extras=ecr-cache
+    timeout-minutes: 45
 
     strategy:
       fail-fast: false
@@ -190,7 +279,7 @@ jobs:
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -205,23 +294,29 @@ jobs:
 
       # NOTE: Use pre-ping/null pool to reduce flakiness due to dropped connections
       # NOTE: don't need web server for integration tests
-      - name: Start Docker containers
+      - name: Create .env file for Docker Compose
         env:
           ECR_CACHE: ${{ env.RUNS_ON_ECR_CACHE }}
           RUN_ID: ${{ github.run_id }}
+        run: |
+          cat <<EOF > deployment/docker_compose/.env
+          ENABLE_PAID_ENTERPRISE_EDITION_FEATURES=true
+          AUTH_TYPE=basic
+          POSTGRES_POOL_PRE_PING=true
+          POSTGRES_USE_NULL_POOL=true
+          REQUIRE_EMAIL_VERIFICATION=false
+          DISABLE_TELEMETRY=true
+          ONYX_BACKEND_IMAGE=${ECR_CACHE}:integration-test-backend-test-${RUN_ID}
+          ONYX_MODEL_SERVER_IMAGE=${ECR_CACHE}:integration-test-model-server-test-${RUN_ID}
+          INTEGRATION_TESTS_MODE=true
+          CHECK_TTL_MANAGEMENT_TASK_FREQUENCY_IN_HOURS=0.001
+          AUTO_LLM_UPDATE_INTERVAL_SECONDS=1
+          MCP_SERVER_ENABLED=true
+          EOF
+
+      - name: Start Docker containers
         run: |
           cd deployment/docker_compose
-          ENABLE_PAID_ENTERPRISE_EDITION_FEATURES=true \
-          AUTH_TYPE=basic \
-          POSTGRES_POOL_PRE_PING=true \
-          POSTGRES_USE_NULL_POOL=true \
-          REQUIRE_EMAIL_VERIFICATION=false \
-          DISABLE_TELEMETRY=true \
-          ONYX_BACKEND_IMAGE=${ECR_CACHE}:integration-test-backend-test-${RUN_ID} \
-          ONYX_MODEL_SERVER_IMAGE=${ECR_CACHE}:integration-test-model-server-test-${RUN_ID} \
-          INTEGRATION_TESTS_MODE=true \
-          CHECK_TTL_MANAGEMENT_TASK_FREQUENCY_IN_HOURS=0.001 \
-          MCP_SERVER_ENABLED=true \
           docker compose -f docker-compose.yml -f docker-compose.dev.yml up \
             relational_db \
             index \
@@ -230,7 +325,6 @@ jobs:
             api_server \
             inference_model_server \
             indexing_model_server \
-            mcp_server \
             background \
             -d
         id: start_docker
@@ -273,12 +367,6 @@ jobs:
           }
 
           wait_for_service "http://localhost:8080/health" "API server"
-          test_dir="${{ matrix.test-dir.path }}"
-          if [ "$test_dir" = "tests/mcp" ]; then
-            wait_for_service "http://localhost:8090/health" "MCP server"
-          else
-            echo "Skipping MCP server wait for non-MCP suite: $test_dir"
-          fi
           echo "Finished waiting for services."
 
       - name: Start Mock Services
@@ -308,8 +396,6 @@ jobs:
               -e VESPA_HOST=index \
               -e REDIS_HOST=cache \
               -e API_SERVER_HOST=api_server \
-              -e MCP_SERVER_HOST=mcp_server \
-              -e MCP_SERVER_PORT=8090 \
               -e OPENAI_API_KEY=${OPENAI_API_KEY} \
               -e EXA_API_KEY=${EXA_API_KEY} \
               -e SLACK_BOT_TOKEN=${SLACK_BOT_TOKEN} \
@@ -325,6 +411,11 @@ jobs:
               -e PERM_SYNC_SHAREPOINT_PRIVATE_KEY="${PERM_SYNC_SHAREPOINT_PRIVATE_KEY}" \
               -e PERM_SYNC_SHAREPOINT_CERTIFICATE_PASSWORD=${PERM_SYNC_SHAREPOINT_CERTIFICATE_PASSWORD} \
               -e PERM_SYNC_SHAREPOINT_DIRECTORY_ID=${PERM_SYNC_SHAREPOINT_DIRECTORY_ID} \
+              -e GITHUB_PERMISSION_SYNC_TEST_ACCESS_TOKEN=${GITHUB_PERMISSION_SYNC_TEST_ACCESS_TOKEN} \
+              -e GITHUB_PERMISSION_SYNC_TEST_ACCESS_TOKEN_CLASSIC=${GITHUB_PERMISSION_SYNC_TEST_ACCESS_TOKEN_CLASSIC} \
+              -e GITHUB_ADMIN_EMAIL=${GITHUB_ADMIN_EMAIL} \
+              -e GITHUB_TEST_USER_1_EMAIL=${GITHUB_TEST_USER_1_EMAIL} \
+              -e GITHUB_TEST_USER_2_EMAIL=${GITHUB_TEST_USER_2_EMAIL} \
               -e TEST_WEB_HOSTNAME=test-runner \
               -e MOCK_CONNECTOR_SERVER_HOST=mock_connector_server \
               -e MOCK_CONNECTOR_SERVER_PORT=8001 \
@@ -353,20 +444,22 @@ jobs:
           path: ${{ github.workspace }}/docker-compose.log
       # ------------------------------------------------------------
 
-
   multitenant-tests:
     needs:
+      [build-backend-image, build-model-server-image, build-integration-image]
+    runs-on:
       [
-        build-backend-image,
-        build-model-server-image,
-        build-integration-image,
+        runs-on,
+        runner=8cpu-linux-arm64,
+        "run-id=${{ github.run_id }}-multitenant-tests",
+        "extras=ecr-cache",
       ]
-    runs-on: [runs-on, runner=8cpu-linux-arm64, "run-id=${{ github.run_id }}-multitenant-tests", "extras=ecr-cache"]
+    timeout-minutes: 45
 
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -387,10 +480,10 @@ jobs:
           AUTH_TYPE=cloud \
           REQUIRE_EMAIL_VERIFICATION=false \
           DISABLE_TELEMETRY=true \
+          OPENAI_DEFAULT_API_KEY=${OPENAI_API_KEY} \
           ONYX_BACKEND_IMAGE=${ECR_CACHE}:integration-test-backend-test-${RUN_ID} \
           ONYX_MODEL_SERVER_IMAGE=${ECR_CACHE}:integration-test-model-server-test-${RUN_ID} \
           DEV_MODE=true \
-          MCP_SERVER_ENABLED=true \
           docker compose -f docker-compose.multitenant-dev.yml up \
             relational_db \
             index \
@@ -399,7 +492,6 @@ jobs:
             api_server \
             inference_model_server \
             indexing_model_server \
-            mcp_server \
             background \
             -d
         id: start_docker_multi_tenant
@@ -448,8 +540,6 @@ jobs:
             -e VESPA_HOST=index \
             -e REDIS_HOST=cache \
             -e API_SERVER_HOST=api_server \
-            -e MCP_SERVER_HOST=mcp_server \
-            -e MCP_SERVER_PORT=8090 \
             -e OPENAI_API_KEY=${OPENAI_API_KEY} \
             -e EXA_API_KEY=${EXA_API_KEY} \
             -e SLACK_BOT_TOKEN=${SLACK_BOT_TOKEN} \
@@ -491,6 +581,7 @@ jobs:
   required:
     # NOTE: Github-hosted runners have about 20s faster queue times and are preferred here.
     runs-on: ubuntu-slim
+    timeout-minutes: 45
     needs: [integration-tests, multitenant-tests]
     if: ${{ always() }}
     steps:

.github/workflows/pr-jest-tests.yml

@@ -3,7 +3,15 @@ concurrency:
   group: Run-Jest-Tests-${{ github.workflow }}-${{ github.head_ref || github.event.workflow_run.head_branch || github.run_id }}
   cancel-in-progress: true
 
-on: push
+on:
+  merge_group:
+  pull_request:
+    branches:
+      - main
+      - "release/**"
+  push:
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
@@ -12,17 +20,18 @@ jobs:
   jest-tests:
     name: Jest Tests
     runs-on: ubuntu-latest
+    timeout-minutes: 45
     steps:
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Setup node
-        uses: actions/setup-node@2028fbc5c25fe9cf00d9f06a71cc4710d4507903 # ratchet:actions/setup-node@v4
+        uses: actions/setup-node@395ad3262231945c25e8478fd5baf05154b1d79f # ratchet:actions/setup-node@v4
         with:
           node-version: 22
-          cache: 'npm'
+          cache: "npm"
           cache-dependency-path: ./web/package-lock.json
 
       - name: Install node dependencies

.github/workflows/pr-labeler.yml

@@ -16,6 +16,7 @@ permissions:
 jobs:
   validate_pr_title:
     runs-on: ubuntu-latest
+    timeout-minutes: 45
     steps:
       - name: Check PR title for Conventional Commits
         env:

.github/workflows/pr-linear-check.yml

@@ -13,6 +13,7 @@ permissions:
 jobs:
   linear-check:
     runs-on: ubuntu-latest
+    timeout-minutes: 45
     steps:
       - name: Check PR body for Linear link or override
         env:

.github/workflows/pr-mit-integration-tests.yml

@@ -6,6 +6,9 @@ concurrency:
 on:
   merge_group:
     types: [checks_requested]
+  push:
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
@@ -32,11 +35,12 @@ jobs:
   discover-test-dirs:
     # NOTE: Github-hosted runners have about 20s faster queue times and are preferred here.
     runs-on: ubuntu-slim
+    timeout-minutes: 45
     outputs:
       test-dirs: ${{ steps.set-matrix.outputs.test-dirs }}
     steps:
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -44,7 +48,7 @@ jobs:
         id: set-matrix
         run: |
           # Find all leaf-level directories in both test directories
-          tests_dirs=$(find backend/tests/integration/tests -mindepth 1 -maxdepth 1 -type d ! -name "__pycache__" -exec basename {} \; | sort)
+          tests_dirs=$(find backend/tests/integration/tests -mindepth 1 -maxdepth 1 -type d ! -name "__pycache__" ! -name "mcp" -exec basename {} \; | sort)
           connector_dirs=$(find backend/tests/integration/connector_job_tests -mindepth 1 -maxdepth 1 -type d ! -name "__pycache__" -exec basename {} \; | sort)
 
           # Create JSON array with directory info
@@ -61,14 +65,35 @@ jobs:
           echo "test-dirs=$all_dirs" >> $GITHUB_OUTPUT
 
   build-backend-image:
-    runs-on: [runs-on, runner=1cpu-linux-arm64, "run-id=${{ github.run_id }}-build-backend-image", "extras=ecr-cache"]
+    runs-on:
+      [
+        runs-on,
+        runner=1cpu-linux-arm64,
+        "run-id=${{ github.run_id }}-build-backend-image",
+        "extras=ecr-cache",
+      ]
+    timeout-minutes: 45
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -89,20 +114,46 @@ jobs:
           push: true
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:integration-test-backend-test-${{ github.run_id }}
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache
             type=registry,ref=onyxdotapp/onyx-backend:latest
-          cache-to: type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache,mode=max
+          cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache,mode=max
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   build-model-server-image:
-    runs-on: [runs-on, runner=1cpu-linux-arm64, "run-id=${{ github.run_id }}-build-model-server-image", "extras=ecr-cache"]
+    runs-on:
+      [
+        runs-on,
+        runner=1cpu-linux-arm64,
+        "run-id=${{ github.run_id }}-build-model-server-image",
+        "extras=ecr-cache",
+      ]
+    timeout-minutes: 45
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -123,19 +174,45 @@ jobs:
           push: true
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:integration-test-model-server-test-${{ github.run_id }}
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache
             type=registry,ref=onyxdotapp/onyx-model-server:latest
-          cache-to: type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache,mode=max
+          cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache,mode=max
 
   build-integration-image:
-    runs-on: [runs-on, runner=2cpu-linux-arm64, "run-id=${{ github.run_id }}-build-integration-image", "extras=ecr-cache"]
+    runs-on:
+      [
+        runs-on,
+        runner=2cpu-linux-arm64,
+        "run-id=${{ github.run_id }}-build-integration-image",
+        "extras=ecr-cache",
+      ]
+    timeout-minutes: 45
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -152,12 +229,22 @@ jobs:
         env:
           INTEGRATION_REPOSITORY: ${{ env.RUNS_ON_ECR_CACHE }}
           TAG: integration-test-${{ github.run_id }}
+          CACHE_SUFFIX: ${{ steps.format-branch.outputs.cache-suffix }}
+          HEAD_SHA: ${{ github.event.pull_request.head.sha || github.sha }}
         run: |
-          cd backend && docker buildx bake --push \
+          docker buildx bake --push \
+            --set backend.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${HEAD_SHA} \
+            --set backend.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${CACHE_SUFFIX} \
             --set backend.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache \
             --set backend.cache-from=type=registry,ref=onyxdotapp/onyx-backend:latest \
+            --set backend.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${HEAD_SHA},mode=max \
+            --set backend.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache-${CACHE_SUFFIX},mode=max \
             --set backend.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:backend-cache,mode=max \
+            --set integration.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${HEAD_SHA} \
+            --set integration.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${CACHE_SUFFIX} \
             --set integration.cache-from=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache \
+            --set integration.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${HEAD_SHA},mode=max \
+            --set integration.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache-${CACHE_SUFFIX},mode=max \
             --set integration.cache-to=type=registry,ref=${RUNS_ON_ECR_CACHE}:integration-cache,mode=max \
             integration
 
@@ -174,6 +261,7 @@ jobs:
       - runner=4cpu-linux-arm64
       - ${{ format('run-id={0}-integration-tests-mit-job-{1}', github.run_id, strategy['job-index']) }}
       - extras=ecr-cache
+    timeout-minutes: 45
 
     strategy:
       fail-fast: false
@@ -183,7 +271,7 @@ jobs:
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -198,21 +286,27 @@ jobs:
 
       # NOTE: Use pre-ping/null pool to reduce flakiness due to dropped connections
       # NOTE: don't need web server for integration tests
-      - name: Start Docker containers
+      - name: Create .env file for Docker Compose
         env:
           ECR_CACHE: ${{ env.RUNS_ON_ECR_CACHE }}
           RUN_ID: ${{ github.run_id }}
+        run: |
+          cat <<EOF > deployment/docker_compose/.env
+          AUTH_TYPE=basic
+          POSTGRES_POOL_PRE_PING=true
+          POSTGRES_USE_NULL_POOL=true
+          REQUIRE_EMAIL_VERIFICATION=false
+          DISABLE_TELEMETRY=true
+          ONYX_BACKEND_IMAGE=${ECR_CACHE}:integration-test-backend-test-${RUN_ID}
+          ONYX_MODEL_SERVER_IMAGE=${ECR_CACHE}:integration-test-model-server-test-${RUN_ID}
+          INTEGRATION_TESTS_MODE=true
+          MCP_SERVER_ENABLED=true
+          AUTO_LLM_UPDATE_INTERVAL_SECONDS=1
+          EOF
+
+      - name: Start Docker containers
         run: |
           cd deployment/docker_compose
-          AUTH_TYPE=basic \
-          POSTGRES_POOL_PRE_PING=true \
-          POSTGRES_USE_NULL_POOL=true \
-          REQUIRE_EMAIL_VERIFICATION=false \
-          DISABLE_TELEMETRY=true \
-          ONYX_BACKEND_IMAGE=${ECR_CACHE}:integration-test-backend-test-${RUN_ID} \
-          ONYX_MODEL_SERVER_IMAGE=${ECR_CACHE}:integration-test-model-server-test-${RUN_ID} \
-          INTEGRATION_TESTS_MODE=true \
-          MCP_SERVER_ENABLED=true \
           docker compose -f docker-compose.yml -f docker-compose.dev.yml up \
             relational_db \
             index \
@@ -221,7 +315,6 @@ jobs:
             api_server \
             inference_model_server \
             indexing_model_server \
-            mcp_server \
             background \
             -d
         id: start_docker
@@ -264,12 +357,6 @@ jobs:
           }
 
           wait_for_service "http://localhost:8080/health" "API server"
-          test_dir="${{ matrix.test-dir.path }}"
-          if [ "$test_dir" = "tests/mcp" ]; then
-            wait_for_service "http://localhost:8090/health" "MCP server"
-          else
-            echo "Skipping MCP server wait for non-MCP suite: $test_dir"
-          fi
           echo "Finished waiting for services."
 
       - name: Start Mock Services
@@ -300,8 +387,6 @@ jobs:
               -e VESPA_HOST=index \
               -e REDIS_HOST=cache \
               -e API_SERVER_HOST=api_server \
-              -e MCP_SERVER_HOST=mcp_server \
-              -e MCP_SERVER_PORT=8090 \
               -e OPENAI_API_KEY=${OPENAI_API_KEY} \
               -e EXA_API_KEY=${EXA_API_KEY} \
               -e SLACK_BOT_TOKEN=${SLACK_BOT_TOKEN} \
@@ -345,10 +430,10 @@ jobs:
           path: ${{ github.workspace }}/docker-compose.log
       # ------------------------------------------------------------
 
-
   required:
     # NOTE: Github-hosted runners have about 20s faster queue times and are preferred here.
     runs-on: ubuntu-slim
+    timeout-minutes: 45
     needs: [integration-tests-mit]
     if: ${{ always() }}
     steps:

.github/workflows/pr-playwright-tests.yml

@@ -3,7 +3,15 @@ concurrency:
   group: Run-Playwright-Tests-${{ github.workflow }}-${{ github.head_ref || github.event.workflow_run.head_branch || github.run_id }}
   cancel-in-progress: true
 
-on: push
+on:
+  merge_group:
+  pull_request:
+    branches:
+      - main
+      - "release/**"
+  push:
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
@@ -46,15 +54,36 @@ env:
 
 jobs:
   build-web-image:
-    runs-on: [runs-on, runner=4cpu-linux-arm64, "run-id=${{ github.run_id }}-build-web-image", "extras=ecr-cache"]
+    runs-on:
+      [
+        runs-on,
+        runner=4cpu-linux-arm64,
+        "run-id=${{ github.run_id }}-build-web-image",
+        "extras=ecr-cache",
+      ]
+    timeout-minutes: 45
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -75,21 +104,47 @@ jobs:
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:playwright-test-web-${{ github.run_id }}
           push: true
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache
             type=registry,ref=onyxdotapp/onyx-web-server:latest
-          cache-to: type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache,mode=max
+          cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:web-cache,mode=max
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   build-backend-image:
-    runs-on: [runs-on, runner=1cpu-linux-arm64, "run-id=${{ github.run_id }}-build-backend-image", "extras=ecr-cache"]
+    runs-on:
+      [
+        runs-on,
+        runner=1cpu-linux-arm64,
+        "run-id=${{ github.run_id }}-build-backend-image",
+        "extras=ecr-cache",
+      ]
+    timeout-minutes: 45
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -110,22 +165,47 @@ jobs:
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:playwright-test-backend-${{ github.run_id }}
           push: true
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache
             type=registry,ref=onyxdotapp/onyx-backend:latest
           cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:backend-cache,mode=max
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   build-model-server-image:
-    runs-on: [runs-on, runner=1cpu-linux-arm64, "run-id=${{ github.run_id }}-build-model-server-image", "extras=ecr-cache"]
+    runs-on:
+      [
+        runs-on,
+        runner=1cpu-linux-arm64,
+        "run-id=${{ github.run_id }}-build-model-server-image",
+        "extras=ecr-cache",
+      ]
+    timeout-minutes: 45
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
+      - name: Format branch name for cache
+        id: format-branch
+        env:
+          PR_NUMBER: ${{ github.event.pull_request.number }}
+          REF_NAME: ${{ github.ref_name }}
+        run: |
+          if [ -n "${PR_NUMBER}" ]; then
+            CACHE_SUFFIX="${PR_NUMBER}"
+          else
+            # shellcheck disable=SC2001
+            CACHE_SUFFIX=$(echo "${REF_NAME}" | sed 's/[^A-Za-z0-9._-]/-/g')
+          fi
+          echo "cache-suffix=${CACHE_SUFFIX}" >> $GITHUB_OUTPUT
+
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@e468171a9de216ec08956ac3ada2f0791b6bd435 # ratchet:docker/setup-buildx-action@v3
 
@@ -146,9 +226,14 @@ jobs:
           tags: ${{ env.RUNS_ON_ECR_CACHE }}:playwright-test-model-server-${{ github.run_id }}
           push: true
           cache-from: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ github.event.pull_request.head.sha || github.sha }}
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ steps.format-branch.outputs.cache-suffix }}
             type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache
             type=registry,ref=onyxdotapp/onyx-model-server:latest
-          cache-to: type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache,mode=max
+          cache-to: |
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ github.event.pull_request.head.sha || github.sha }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache-${{ steps.format-branch.outputs.cache-suffix }},mode=max
+            type=registry,ref=${{ env.RUNS_ON_ECR_CACHE }}:model-server-cache,mode=max
           no-cache: ${{ vars.DOCKER_NO_CACHE == 'true' }}
 
   playwright-tests:
@@ -160,6 +245,7 @@ jobs:
       - "run-id=${{ github.run_id }}-playwright-tests-${{ matrix.project }}"
       - "extras=ecr-cache"
       - volume=50gb
+    timeout-minutes: 45
     strategy:
       fail-fast: false
       matrix:
@@ -168,16 +254,15 @@ jobs:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
-          fetch-depth: 0
           persist-credentials: false
 
       - name: Setup node
-        uses: actions/setup-node@2028fbc5c25fe9cf00d9f06a71cc4710d4507903 # ratchet:actions/setup-node@v4
+        uses: actions/setup-node@395ad3262231945c25e8478fd5baf05154b1d79f # ratchet:actions/setup-node@v4
         with:
           node-version: 22
-          cache: 'npm'
+          cache: "npm"
           cache-dependency-path: ./web/package-lock.json
 
       - name: Install node dependencies
@@ -378,6 +463,7 @@ jobs:
   playwright-required:
     # NOTE: Github-hosted runners have about 20s faster queue times and are preferred here.
     runs-on: ubuntu-slim
+    timeout-minutes: 45
     needs: [playwright-tests]
     if: ${{ always() }}
     steps:
@@ -385,7 +471,6 @@ jobs:
         if: ${{ contains(needs.*.result, 'failure') || contains(needs.*.result, 'cancelled') || contains(needs.*.result, 'skipped') }}
         run: exit 1
 
-
 # NOTE: Chromatic UI diff testing is currently disabled.
 # We are using Playwright for local and CI testing without visual regression checks.
 # Chromatic may be reintroduced in the future for UI diff testing if needed.
@@ -403,12 +488,12 @@ jobs:
 #     ]
 #   steps:
 #     - name: Checkout code
-#       uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+#       uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
 #       with:
 #         fetch-depth: 0
 
 #     - name: Setup node
-#       uses: actions/setup-node@2028fbc5c25fe9cf00d9f06a71cc4710d4507903 # ratchet:actions/setup-node@v4
+#       uses: actions/setup-node@395ad3262231945c25e8478fd5baf05154b1d79f # ratchet:actions/setup-node@v4
 #       with:
 #         node-version: 22
 

.github/workflows/pr-python-checks.yml

@@ -9,6 +9,9 @@ on:
     branches:
       - main
       - 'release/**'
+  push:
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
@@ -19,28 +22,28 @@ jobs:
     # Note: Mypy seems quite optimized for x64 compared to arm64.
     # Similarly, mypy is single-threaded and incremental, so 2cpu is sufficient.
     runs-on: [runs-on, runner=2cpu-linux-x64, "run-id=${{ github.run_id }}-mypy-check", "extras=s3-cache"]
+    timeout-minutes: 45
 
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
-      # needed for pulling openapitools/openapi-generator-cli
-      # otherwise, we hit the "Unauthenticated users" limit
-      # https://docs.docker.com/docker-hub/usage/
-      - name: Login to Docker Hub
-        uses: docker/login-action@5e57cd118135c172c3672efd75eb46360885c0ef # ratchet:docker/login-action@v3
+      - name: Setup Python and Install Dependencies
+        uses: ./.github/actions/setup-python-and-install-dependencies
         with:
-          username: ${{ secrets.DOCKER_USERNAME }}
-          password: ${{ secrets.DOCKER_TOKEN }}
+          requirements: |
+            backend/requirements/default.txt
+            backend/requirements/dev.txt
+            backend/requirements/model_server.txt
+            backend/requirements/ee.txt
 
-      - name: Prepare build
-        uses: ./.github/actions/prepare-build
-        with:
-          docker-username: ${{ secrets.DOCKER_USERNAME }}
-          docker-password: ${{ secrets.DOCKER_TOKEN }}
+      - name: Generate OpenAPI schema and Python client
+        shell: bash
+        run: |
+          ods openapi all
 
       - name: Cache mypy cache
         if: ${{ vars.DISABLE_MYPY_CACHE != 'true' }}
@@ -58,11 +61,8 @@ jobs:
           TERM: xterm-256color
         run: mypy .
 
-      - name: Check import order with reorder-python-imports
-        working-directory: ./backend
-        run: |
-          find ./onyx -name "*.py" | xargs reorder-python-imports --py311-plus
-
-      - name: Check code formatting with Black
-        working-directory: ./backend
-        run: black --check .
+      - name: Run MyPy (tools/)
+        env:
+          MYPY_FORCE_COLOR: 1
+          TERM: xterm-256color
+        run: mypy tools/

.github/workflows/pr-python-connector-tests.yml

@@ -7,6 +7,9 @@ on:
   merge_group:
   pull_request:
     branches: [main]
+  push:
+    tags:
+      - "v*.*.*"
   schedule:
     # This cron expression runs the job daily at 16:00 UTC (9am PT)
     - cron: "0 16 * * *"
@@ -126,20 +129,26 @@ jobs:
   connectors-check:
     # See https://runs-on.com/runners/linux/
     runs-on: [runs-on, runner=8cpu-linux-x64, "run-id=${{ github.run_id }}-connectors-check", "extras=s3-cache"]
+    timeout-minutes: 45
 
     env:
       PYTHONPATH: ./backend
+      DISABLE_TELEMETRY: "true"
 
     steps:
       - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
       - name: Setup Python and Install Dependencies
         uses: ./.github/actions/setup-python-and-install-dependencies
+        with:
+          requirements: |
+            backend/requirements/default.txt
+            backend/requirements/dev.txt
 
       - name: Setup Playwright
         uses: ./.github/actions/setup-playwright
@@ -152,16 +161,20 @@ jobs:
             hubspot:
               - 'backend/onyx/connectors/hubspot/**'
               - 'backend/tests/daily/connectors/hubspot/**'
+              - 'uv.lock'
             salesforce:
               - 'backend/onyx/connectors/salesforce/**'
               - 'backend/tests/daily/connectors/salesforce/**'
+              - 'uv.lock'
             github:
               - 'backend/onyx/connectors/github/**'
               - 'backend/tests/daily/connectors/github/**'
+              - 'uv.lock'
             file_processing:
               - 'backend/onyx/file_processing/**'
+              - 'uv.lock'
 
-      - name: Run Tests (excluding HubSpot, Salesforce, and GitHub)
+      - name: Run Tests (excluding HubSpot, Salesforce, GitHub, and Coda)
         shell: script -q -e -c "bash --noprofile --norc -eo pipefail {0}"
         run: |
           py.test \
@@ -174,7 +187,8 @@ jobs:
             backend/tests/daily/connectors \
             --ignore backend/tests/daily/connectors/hubspot \
             --ignore backend/tests/daily/connectors/salesforce \
-            --ignore backend/tests/daily/connectors/github
+            --ignore backend/tests/daily/connectors/github \
+            --ignore backend/tests/daily/connectors/coda
 
       - name: Run HubSpot Connector Tests
         if: ${{ github.event_name == 'schedule' || steps.changes.outputs.hubspot == 'true' || steps.changes.outputs.file_processing == 'true' }}

.github/workflows/pr-python-model-tests.yml

@@ -32,13 +32,14 @@ jobs:
   model-check:
     # See https://runs-on.com/runners/linux/
     runs-on: [runs-on,runner=8cpu-linux-x64,"run-id=${{ github.run_id }}-model-check"]
+    timeout-minutes: 45
 
     env:
       PYTHONPATH: ./backend
 
     steps:
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           persist-credentials: false
 
@@ -60,7 +61,7 @@ jobs:
           docker tag onyxdotapp/onyx-model-server:latest onyxdotapp/onyx-model-server:test
 
       - name: Set up Python
-        uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # ratchet:actions/setup-python@v6
+        uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # ratchet:actions/setup-python@v6
         with:
           python-version: "3.11"
           cache: "pip"

.github/workflows/pr-python-tests.yml

@@ -9,6 +9,9 @@ on:
     branches:
       - main
       - 'release/**'
+  push:
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
@@ -17,25 +20,30 @@ jobs:
   backend-check:
     # See https://runs-on.com/runners/linux/
     runs-on: [runs-on, runner=2cpu-linux-arm64, "run-id=${{ github.run_id }}-backend-check"]
+    timeout-minutes: 45
 
 
     env:
       PYTHONPATH: ./backend
       REDIS_CLOUD_PYTEST_PASSWORD: ${{ secrets.REDIS_CLOUD_PYTEST_PASSWORD }}
-      SF_USERNAME: ${{ secrets.SF_USERNAME }}
-      SF_PASSWORD: ${{ secrets.SF_PASSWORD }}
-      SF_SECURITY_TOKEN: ${{ secrets.SF_SECURITY_TOKEN }}
+      DISABLE_TELEMETRY: "true"
 
     steps:
     - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
 
     - name: Checkout code
-      uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+      uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
       with:
         persist-credentials: false
 
     - name: Setup Python and Install Dependencies
       uses: ./.github/actions/setup-python-and-install-dependencies
+      with:
+        requirements: |
+          backend/requirements/default.txt
+          backend/requirements/dev.txt
+          backend/requirements/model_server.txt
+          backend/requirements/ee.txt
 
     - name: Run Tests
       shell: script -q -e -c "bash --noprofile --norc -eo pipefail {0}"

.github/workflows/pr-quality-checks.yml

@@ -6,25 +6,44 @@ concurrency:
 on:
   merge_group:
   pull_request: null
+  push:
+    branches:
+      - main
+    tags:
+      - "v*.*.*"
 
 permissions:
   contents: read
 
 jobs:
   quality-checks:
-    # See https://runs-on.com/runners/linux/
-    runs-on: [runs-on, runner=1cpu-linux-arm64, "run-id=${{ github.run_id }}-quality-checks"]
+    runs-on: ubuntu-latest
+    timeout-minutes: 45
     steps:
-      - uses: runs-on/action@cd2b598b0515d39d78c38a02d529db87d2196d1e # ratchet:runs-on/action@v2
-      - uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+      - uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           fetch-depth: 0
           persist-credentials: false
-      - uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # ratchet:actions/setup-python@v6
+      - uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # ratchet:actions/setup-python@v6
         with:
           python-version: "3.11"
       - name: Setup Terraform
         uses: hashicorp/setup-terraform@b9cd54a3c349d3f38e8881555d616ced269862dd # ratchet:hashicorp/setup-terraform@v3
-      - uses: pre-commit/action@2c7b3805fd2a0fd8c1884dcaebf91fc102a13ecd # ratchet:pre-commit/action@v3.0.1
+      - name: Setup node
+        uses: actions/setup-node@395ad3262231945c25e8478fd5baf05154b1d79f # ratchet:actions/setup-node@v6
+        with: # zizmor: ignore[cache-poisoning]
+          node-version: 22
+          cache: "npm"
+          cache-dependency-path: ./web/package-lock.json
+      - name: Install node dependencies
+        working-directory: ./web
+        run: npm ci
+      - uses: j178/prek-action@91fd7d7cf70ae1dee9f4f44e7dfa5d1073fe6623 # ratchet:j178/prek-action@v1
         with:
-          extra_args: ${{ github.event_name == 'pull_request' && format('--from-ref {0} --to-ref {1}', github.event.pull_request.base.sha, github.event.pull_request.head.sha) || '' }}
+          prek-version: '0.2.21'
+          extra-args: ${{ github.event_name == 'pull_request' && format('--from-ref {0} --to-ref {1}', github.event.pull_request.base.sha, github.event.pull_request.head.sha) || github.event_name == 'merge_group' && format('--from-ref {0} --to-ref {1}', github.event.merge_group.base_sha, github.event.merge_group.head_sha) || github.ref_name == 'main' && '--all-files' || '' }}
+      - name: Check Actions
+        uses: giner/check-actions@28d366c7cbbe235f9624a88aa31a628167eee28c # ratchet:giner/check-actions@v1.0.1
+        with:
+          check_permissions: false
+          check_versions: false

.github/workflows/release-devtools.yml

@@ -0,0 +1,41 @@
+name: Release Devtools
+
+on:
+  push:
+    tags:
+      - "ods/v*.*.*"
+
+jobs:
+  pypi:
+    runs-on: ubuntu-latest
+    environment:
+      name: release-devtools
+    permissions:
+      id-token: write
+    timeout-minutes: 10
+    strategy:
+      matrix:
+        os-arch:
+          - { goos: "linux", goarch: "amd64" }
+          - { goos: "linux", goarch: "arm64" }
+          - { goos: "windows", goarch: "amd64" }
+          - { goos: "windows", goarch: "arm64" }
+          - { goos: "darwin", goarch: "amd64" }
+          - { goos: "darwin", goarch: "arm64" }
+          - { goos: "", goarch: "" }
+    steps:
+      - uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
+        with:
+          persist-credentials: false
+          fetch-depth: 0
+      - uses: astral-sh/setup-uv@ed21f2f24f8dd64503750218de024bcf64c7250a # ratchet:astral-sh/setup-uv@v7
+        with:
+          enable-cache: false
+          version: "0.9.9"
+      - run: |
+          GOOS="${{ matrix.os-arch.goos }}" \
+          GOARCH="${{ matrix.os-arch.goarch }}" \
+          uv build --wheel
+        working-directory: tools/ods
+      - run: uv publish
+        working-directory: tools/ods

.github/workflows/sync_foss.yml

@@ -9,11 +9,12 @@ on:
 jobs:
   sync-foss:
     runs-on: ubuntu-latest
+    timeout-minutes: 45
     permissions:
       contents: read
     steps:
       - name: Checkout main Onyx repo
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           fetch-depth: 0
           persist-credentials: false

.github/workflows/tag-nightly.yml

@@ -11,13 +11,14 @@ permissions:
 jobs:
   create-and-push-tag:
     runs-on: ubuntu-slim
+    timeout-minutes: 45
 
     steps:
       # actions using GITHUB_TOKEN cannot trigger another workflow, but we do want this to trigger docker pushes
       # see https://github.com/orgs/community/discussions/27028#discussioncomment-3254367 for the workaround we
       # implement here which needs an actual user's deploy key
       - name: Checkout code
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6
         with:
           ssh-key: "${{ secrets.DEPLOY_KEY }}"
           persist-credentials: true

.github/workflows/zizmor.yml

@@ -12,23 +12,38 @@ jobs:
   zizmor:
     name: zizmor
     runs-on: ubuntu-slim
+    timeout-minutes: 45
     permissions:
       security-events: write # needed for SARIF uploads
     steps:
       - name: Checkout repository
-        uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # ratchet:actions/checkout@v6.0.0
+        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8 # ratchet:actions/checkout@v6.0.1
         with:
           persist-credentials: false
 
+      - name: Detect changes
+        id: filter
+        uses: dorny/paths-filter@de90cc6fb38fc0963ad72b210f1f284cd68cea36 # ratchet:dorny/paths-filter@v3
+        with:
+          filters: |
+            zizmor:
+              - '.github/**'
+
       - name: Install the latest version of uv
-        uses: astral-sh/setup-uv@5a7eac68fb9809dea845d802897dc5c723910fa3 # ratchet:astral-sh/setup-uv@v7.1.3
+        if: steps.filter.outputs.zizmor == 'true' || github.ref_name == 'main'
+        uses: astral-sh/setup-uv@ed21f2f24f8dd64503750218de024bcf64c7250a # ratchet:astral-sh/setup-uv@v7
+        with:
+          enable-cache: false
+          version: "0.9.9"
 
       - name: Run zizmor
-        run: uvx zizmor==1.16.3 --format=sarif . > results.sarif
+        if: steps.filter.outputs.zizmor == 'true' || github.ref_name == 'main'
+        run: uv run --no-sync --with zizmor zizmor --format=sarif . > results.sarif
         env:
           GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
 
       - name: Upload SARIF file
+        if: steps.filter.outputs.zizmor == 'true' || github.ref_name == 'main'
         uses: github/codeql-action/upload-sarif@ba454b8ab46733eb6145342877cd148270bb77ab # ratchet:github/codeql-action/upload-sarif@codeql-bundle-v2.23.5
         with:
           sarif_file: results.sarif

.gitignore

@@ -49,5 +49,10 @@ CLAUDE.md
 # Local .terraform.lock.hcl file
 .terraform.lock.hcl
 
+node_modules
+
 # MCP configs
 .playwright-mcp
+
+# plans
+plans/

.pre-commit-config.yaml

@@ -1,61 +1,142 @@
+default_install_hook_types:
+  - pre-commit
+  - post-checkout
+  - post-merge
+  - post-rewrite
 repos:
-  - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+  - repo: https://github.com/astral-sh/uv-pre-commit
+    # From: https://github.com/astral-sh/uv-pre-commit/pull/53/commits/d30b4298e4fb63ce8609e29acdbcf4c9018a483c
+    rev: d30b4298e4fb63ce8609e29acdbcf4c9018a483c
     hooks:
-      - id: check-yaml
-        files: ^.github/
+      - id: uv-sync
+        args: ["--locked", "--all-extras"]
+      - id: uv-lock
+        files: ^pyproject\.toml$
+      - id: uv-export
+        name: uv-export default.txt
+        args:
+          [
+            "--no-emit-project",
+            "--no-default-groups",
+            "--no-hashes",
+            "--extra",
+            "backend",
+            "-o",
+            "backend/requirements/default.txt",
+          ]
+        files: ^(pyproject\.toml|uv\.lock|backend/requirements/.*\.txt)$
+      - id: uv-export
+        name: uv-export dev.txt
+        args:
+          [
+            "--no-emit-project",
+            "--no-default-groups",
+            "--no-hashes",
+            "--extra",
+            "dev",
+            "-o",
+            "backend/requirements/dev.txt",
+          ]
+        files: ^(pyproject\.toml|uv\.lock|backend/requirements/.*\.txt)$
+      - id: uv-export
+        name: uv-export ee.txt
+        args:
+          [
+            "--no-emit-project",
+            "--no-default-groups",
+            "--no-hashes",
+            "--extra",
+            "ee",
+            "-o",
+            "backend/requirements/ee.txt",
+          ]
+        files: ^(pyproject\.toml|uv\.lock|backend/requirements/.*\.txt)$
+      - id: uv-export
+        name: uv-export model_server.txt
+        args:
+          [
+            "--no-emit-project",
+            "--no-default-groups",
+            "--no-hashes",
+            "--extra",
+            "model_server",
+            "-o",
+            "backend/requirements/model_server.txt",
+          ]
+        files: ^(pyproject\.toml|uv\.lock|backend/requirements/.*\.txt)$
+      - id: uv-run
+        name: Check lazy imports
+        args: ["--active", "--with=onyx-devtools", "ods", "check-lazy-imports"]
+        files: ^backend/(?!\.venv/).*\.py$
+      # NOTE: This takes ~6s on a single, large module which is prohibitively slow.
+      # - id: uv-run
+      #   name: mypy
+      #   args: ["--all-extras", "mypy"]
+      #   pass_filenames: true
+      #   files: ^backend/.*\.py$
 
   - repo: https://github.com/rhysd/actionlint
-    rev: v1.7.8
+    rev: a443f344ff32813837fa49f7aa6cbc478d770e62 # frozen: v1.7.9
     hooks:
       - id: actionlint
 
   - repo: https://github.com/psf/black
-    rev: 25.1.0
+    rev: 8a737e727ac5ab2f1d4cf5876720ed276dc8dc4b # frozen: 25.1.0
     hooks:
-    - id: black
-      language_version: python3.11
+      - id: black
+        language_version: python3.11
 
   # this is a fork which keeps compatibility with black
   - repo: https://github.com/wimglenn/reorder-python-imports-black
-    rev: v3.14.0
+    rev: f55cd27f90f0cf0ee775002c2383ce1c7820013d # frozen: v3.14.0
     hooks:
-    - id: reorder-python-imports
-      args: ['--py311-plus', '--application-directories=backend/']
-      # need to ignore alembic files, since reorder-python-imports gets confused
-      # and thinks that alembic is a local package since there is a folder
-      # in the backend directory called `alembic`
-      exclude: ^backend/alembic/
+      - id: reorder-python-imports
+        args: ["--py311-plus", "--application-directories=backend/"]
+        # need to ignore alembic files, since reorder-python-imports gets confused
+        # and thinks that alembic is a local package since there is a folder
+        # in the backend directory called `alembic`
+        exclude: ^backend/alembic/
 
   # These settings will remove unused imports with side effects
   # Note: The repo currently does not and should not have imports with side effects
   - repo: https://github.com/PyCQA/autoflake
-    rev: v2.3.1
+    rev: 0544741e2b4a22b472d9d93e37d4ea9153820bb1 # frozen: v2.3.1
     hooks:
       - id: autoflake
-        args: [ '--remove-all-unused-imports', '--remove-unused-variables', '--in-place' , '--recursive']
+        args:
+          [
+            "--remove-all-unused-imports",
+            "--remove-unused-variables",
+            "--in-place",
+            "--recursive",
+          ]
+
+  - repo: https://github.com/golangci/golangci-lint
+    rev: 9f61b0f53f80672872fced07b6874397c3ed197b # frozen: v2.7.2
+    hooks:
+      - id: golangci-lint
+        entry: bash -c "find tools/ -name go.mod -print0 | xargs -0 -I{} bash -c 'cd \"$(dirname {})\" && golangci-lint run ./...'"
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.11.4
+    rev: 971923581912ef60a6b70dbf0c3e9a39563c9d47 # frozen: v0.11.4
     hooks:
       - id: ruff
 
   - repo: https://github.com/pre-commit/mirrors-prettier
-    rev: v3.1.0
+    rev: ffb6a759a979008c0e6dff86e39f4745a2d9eac4 # frozen: v3.1.0
     hooks:
-    - id: prettier
-      types_or: [html, css, javascript, ts, tsx]
-      language_version: system
+      - id: prettier
+        types_or: [html, css, javascript, ts, tsx]
+        language_version: system
 
   - repo: https://github.com/sirwart/ripsecrets
-    rev: v0.1.11
+    rev: 7d94620933e79b8acaa0cd9e60e9864b07673d86 # frozen: v0.1.11
     hooks:
       - id: ripsecrets
         args:
-        - --additional-pattern
-        - ^sk-[A-Za-z0-9_\-]{20,}$
-
+          - --additional-pattern
+          - ^sk-[A-Za-z0-9_\-]{20,}$
 
   - repo: local
     hooks:
@@ -66,36 +147,13 @@ repos:
         pass_filenames: false
         files: \.tf$
 
-      - id: check-lazy-imports
-        name: Check lazy imports
-        entry: python3 backend/scripts/check_lazy_imports.py
+      # Uses tsgo (TypeScript's native Go compiler) for ~10x faster type checking.
+      # This is a preview package - if it breaks:
+      #   1. Try updating: cd web && npm update @typescript/native-preview
+      #   2. Or fallback to tsc: replace 'tsgo' with 'tsc' below
+      - id: typescript-check
+        name: TypeScript type check
+        entry: bash -c 'cd web && npx tsgo --noEmit --project tsconfig.types.json'
         language: system
-        files: ^backend/(?!\.venv/).*\.py$
-
-  # We would like to have a mypy pre-commit hook, but due to the fact that
-  # pre-commit runs in it's own isolated environment, we would need to install
-  # and keep in sync all dependencies so mypy has access to the appropriate type
-  # stubs. This does not seem worth it at the moment, so for now we will stick to
-  # having mypy run via Github Actions / manually by contributors
-  # - repo: https://github.com/pre-commit/mirrors-mypy
-  #   rev: v1.1.1
-  #   hooks:
-  #     - id: mypy
-  #       exclude: ^tests/
-  #       # below are needed for type stubs since pre-commit runs in it's own
-  #       # isolated environment. Unfortunately, this needs to be kept in sync
-  #       # with requirements/dev.txt + requirements/default.txt
-  #       additional_dependencies: [
-  #         alembic==1.10.4,
-  #         types-beautifulsoup4==4.12.0.3,
-  #         types-html5lib==1.1.11.13,
-  #         types-oauthlib==3.2.0.9,
-  #         types-psycopg2==2.9.21.10,
-  #         types-python-dateutil==2.8.19.13,
-  #         types-regex==2023.3.23.1,
-  #         types-requests==2.28.11.17,
-  #         types-retry==0.9.9.3,
-  #         types-urllib3==1.26.25.11
-  #       ]
-  #       # TODO: add back once errors are addressed
-  #       # args: [--strict]
+        pass_filenames: false
+        files: ^web/.*\.(ts|tsx)$

.vscode/env_template.txt

@@ -1,66 +1,59 @@
-# Copy this file to .env in the .vscode folder
-# Fill in the <REPLACE THIS> values as needed, it is recommended to set the GEN_AI_API_KEY value to avoid having to set up an LLM in the UI
-# Also check out onyx/backend/scripts/restart_containers.sh for a script to restart the containers which Onyx relies on outside of VSCode/Cursor processes
+# Copy this file to .env in the .vscode folder.
+# Fill in the <REPLACE THIS> values as needed; it is recommended to set the
+# GEN_AI_API_KEY value to avoid having to set up an LLM in the UI.
+# Also check out onyx/backend/scripts/restart_containers.sh for a script to
+# restart the containers which Onyx relies on outside of VSCode/Cursor
+# processes.
 
-# For local dev, often user Authentication is not needed
+
+# For local dev, often user Authentication is not needed.
 AUTH_TYPE=disabled
 
-# Skip warm up for dev
-SKIP_WARM_UP=True
 
-# Always keep these on for Dev
-# Logs all model prompts to stdout
+# Always keep these on for Dev.
+# Logs model prompts, reasoning, and answer to stdout.
 LOG_ONYX_MODEL_INTERACTIONS=True
 # More verbose logging
 LOG_LEVEL=debug
 
 
-# This passes top N results to LLM an additional time for reranking prior to answer generation
-# This step is quite heavy on token usage so we disable it for dev generally
+# This passes top N results to LLM an additional time for reranking prior to
+# answer generation.
+# This step is quite heavy on token usage so we disable it for dev generally.
 DISABLE_LLM_DOC_RELEVANCE=False
 
 
-# Useful if you want to toggle auth on/off (google_oauth/OIDC specifically)
+# Useful if you want to toggle auth on/off (google_oauth/OIDC specifically).
 OAUTH_CLIENT_ID=<REPLACE THIS>
 OAUTH_CLIENT_SECRET=<REPLACE THIS>
 OPENID_CONFIG_URL=<REPLACE THIS>
 SAML_CONF_DIR=/<ABSOLUTE PATH TO ONYX>/onyx/backend/ee/onyx/configs/saml_config
 
-# Generally not useful for dev, we don't generally want to set up an SMTP server for dev
+
+# Generally not useful for dev, we don't generally want to set up an SMTP server
+# for dev.
 REQUIRE_EMAIL_VERIFICATION=False
 
 
-# Set these so if you wipe the DB, you don't end up having to go through the UI every time
+# Set these so if you wipe the DB, you don't end up having to go through the UI
+# every time.
 GEN_AI_API_KEY=<REPLACE THIS>
 OPENAI_API_KEY=<REPLACE THIS>
-# If answer quality isn't important for dev, use gpt-4o-mini since it's cheaper
+# If answer quality isn't important for dev, use gpt-4o-mini since it's cheaper.
 GEN_AI_MODEL_VERSION=gpt-4o
 FAST_GEN_AI_MODEL_VERSION=gpt-4o
 
-# For Onyx Slack Bot, overrides the UI values so no need to set this up via UI every time
-# Only needed if using OnyxBot
-#ONYX_BOT_SLACK_APP_TOKEN=<REPLACE THIS>
-#ONYX_BOT_SLACK_BOT_TOKEN=<REPLACE THIS>
-
 
 # Python stuff
 PYTHONPATH=../backend
 PYTHONUNBUFFERED=1
 
 
-# Internet Search
-EXA_API_KEY=<REPLACE THIS>
-
-
-# Enable the full set of Danswer Enterprise Edition features
-# NOTE: DO NOT ENABLE THIS UNLESS YOU HAVE A PAID ENTERPRISE LICENSE (or if you are using this for local testing/development)
+# Enable the full set of Danswer Enterprise Edition features.
+# NOTE: DO NOT ENABLE THIS UNLESS YOU HAVE A PAID ENTERPRISE LICENSE (or if you
+# are using this for local testing/development).
 ENABLE_PAID_ENTERPRISE_EDITION_FEATURES=False
 
-# Agent Search configs  # TODO: Remove give proper namings
-AGENT_RETRIEVAL_STATS=False   # Note: This setting will incur substantial re-ranking effort
-AGENT_RERANKING_STATS=True
-AGENT_MAX_QUERY_RETRIEVAL_RESULTS=20
-AGENT_RERANKING_MAX_QUERY_RETRIEVAL_RESULTS=20
 
 # S3 File Store Configuration (MinIO for local development)
 S3_ENDPOINT_URL=http://localhost:9004
@@ -68,16 +61,24 @@ S3_FILE_STORE_BUCKET_NAME=onyx-file-store-bucket
 S3_AWS_ACCESS_KEY_ID=minioadmin
 S3_AWS_SECRET_ACCESS_KEY=minioadmin
 
-# Show extra/uncommon connectors
+
+# Show extra/uncommon connectors.
 SHOW_EXTRA_CONNECTORS=True
 
+
 # Local langsmith tracing
 LANGSMITH_TRACING="true"
 LANGSMITH_ENDPOINT="https://api.smith.langchain.com"
 LANGSMITH_API_KEY=<REPLACE_THIS>
 LANGSMITH_PROJECT=<REPLACE_THIS>
 
+
 # Local Confluence OAuth testing
 # OAUTH_CONFLUENCE_CLOUD_CLIENT_ID=<REPLACE_THIS>
 # OAUTH_CONFLUENCE_CLOUD_CLIENT_SECRET=<REPLACE_THIS>
-# NEXT_PUBLIC_TEST_ENV=True
+# NEXT_PUBLIC_TEST_ENV=True
+
+
+# OpenSearch
+# Arbitrary password is fine for local development.
+OPENSEARCH_INITIAL_ADMIN_PASSWORD=<REPLACE THIS>

.vscode/launch.template.jsonc

@@ -133,8 +133,6 @@
       },
       "consoleTitle": "API Server Console"
     },
-    // For the listener to access the Slack API,
-    // ONYX_BOT_SLACK_APP_TOKEN & ONYX_BOT_SLACK_BOT_TOKEN need to be set in .env file located in the root of the project
     {
       "name": "Slack Bot",
       "consoleName": "Slack Bot",
@@ -510,7 +508,21 @@
       ],
       "cwd": "${workspaceFolder}",
       "console": "integratedTerminal",
-      "stopOnEntry": true,
+      "presentation": {
+        "group": "3"
+      }
+    },
+    {
+      "name": "Clear and Restart OpenSearch Container",
+      // Generic debugger type, required arg but has no bearing on bash.
+      "type": "node",
+      "request": "launch",
+      "runtimeExecutable": "bash",
+      "runtimeArgs": [
+        "${workspaceFolder}/backend/scripts/restart_opensearch_container.sh"
+      ],
+      "cwd": "${workspaceFolder}",
+      "console": "integratedTerminal",
       "presentation": {
         "group": "3"
       }
@@ -556,10 +568,10 @@
       "name": "Install Python Requirements",
       "type": "node",
       "request": "launch",
-      "runtimeExecutable": "bash",
+      "runtimeExecutable": "uv",
       "runtimeArgs": [
-        "-c",
-        "pip install -r backend/requirements/default.txt && pip install -r backend/requirements/dev.txt && pip install -r backend/requirements/ee.txt && pip install -r backend/requirements/model_server.txt"
+        "sync",
+        "--all-extras"
       ],
       "cwd": "${workspaceFolder}",
       "console": "integratedTerminal",
@@ -572,14 +584,14 @@
       "name": "Onyx OpenAPI Schema Generator",
       "type": "debugpy",
       "request": "launch",
-      "program": "scripts/onyx_openapi_schema.py",
-      "cwd": "${workspaceFolder}/backend",
+      "program": "backend/scripts/onyx_openapi_schema.py",
+      "cwd": "${workspaceFolder}",
       "envFile": "${workspaceFolder}/.env",
       "env": {
         "PYTHONUNBUFFERED": "1",
-        "PYTHONPATH": "."
+        "PYTHONPATH": "backend"
       },
-      "args": ["--filename", "generated/openapi.json"]
+      "args": ["--filename", "backend/generated/openapi.json", "--generate-python-client"]
     },
     {
       // script to debug multi tenant db issues

AGENTS.md.template

@@ -1,13 +1,13 @@
 # AGENTS.md
 
-This file provides guidance to Codex when working with code in this repository.
+This file provides guidance to AI agents when working with code in this repository.
 
 ## KEY NOTES
 
-- If you run into any missing python dependency errors, try running your command with `source backend/.venv/bin/activate` \
+- If you run into any missing python dependency errors, try running your command with `source .venv/bin/activate` \
 to assume the python venv.
 - To make tests work, check the `.env` file at the root of the project to find an OpenAI key.
-- If using `playwright` to explore the frontend, you can usually log in with username `a@test.com` and password
+- If using `playwright` to explore the frontend, you can usually log in with username `a@example.com` and password
 `a`. The app can be accessed at `http://localhost:3000`.
 - You should assume that all Onyx services are running. To verify, you can check the `backend/log` directory to
 make sure we see logs coming out from the relevant service.
@@ -181,6 +181,286 @@ web/
 └── src/lib/                     # Utilities & business logic
 ```
 
+## Frontend Standards
+
+### 1. Import Standards
+
+**Always use absolute imports with the `@` prefix.**
+
+**Reason:** Moving files around becomes easier since you don't also have to update those import statements. This makes modifications to the codebase much nicer.
+
+```typescript
+// ✅ Good
+import { Button } from "@/components/ui/button";
+import { useAuth } from "@/hooks/useAuth";
+import { Text } from "@/refresh-components/texts/Text";
+
+// ❌ Bad
+import { Button } from "../../../components/ui/button";
+import { useAuth } from "./hooks/useAuth";
+```
+
+### 2. React Component Functions
+
+**Prefer regular functions over arrow functions for React components.**
+
+**Reason:** Functions just become easier to read.
+
+```typescript
+// ✅ Good
+function UserProfile({ userId }: UserProfileProps) {
+  return <div>User Profile</div>
+}
+
+// ❌ Bad
+const UserProfile = ({ userId }: UserProfileProps) => {
+  return <div>User Profile</div>
+}
+```
+
+### 3. Props Interface Extraction
+
+**Extract prop types into their own interface definitions.**
+
+**Reason:** Functions just become easier to read.
+
+```typescript
+// ✅ Good
+interface UserCardProps {
+  user: User
+  showActions?: boolean
+  onEdit?: (userId: string) => void
+}
+
+function UserCard({ user, showActions = false, onEdit }: UserCardProps) {
+  return <div>User Card</div>
+}
+
+// ❌ Bad
+function UserCard({
+  user,
+  showActions = false,
+  onEdit
+}: {
+  user: User
+  showActions?: boolean
+  onEdit?: (userId: string) => void
+}) {
+  return <div>User Card</div>
+}
+```
+
+### 4. Spacing Guidelines
+
+**Prefer padding over margins for spacing.**
+
+**Reason:** We want to consolidate usage to paddings instead of margins.
+
+```typescript
+// ✅ Good
+<div className="p-4 space-y-2">
+  <div className="p-2">Content</div>
+</div>
+
+// ❌ Bad
+<div className="m-4 space-y-2">
+  <div className="m-2">Content</div>
+</div>
+```
+
+### 5. Tailwind Dark Mode
+
+**Strictly forbid using the `dark:` modifier in Tailwind classes, except for logo icon handling.**
+
+**Reason:** The `colors.css` file already, VERY CAREFULLY, defines what the exact opposite colour of each light-mode colour is. Overriding this behaviour is VERY bad and will lead to horrible UI breakages.
+
+**Exception:** The `createLogoIcon` helper in `web/src/components/icons/icons.tsx` uses `dark:` modifiers (`dark:invert`, `dark:hidden`, `dark:block`) to handle third-party logo icons that cannot automatically adapt through `colors.css`. This is the ONLY acceptable use of dark mode modifiers.
+
+```typescript
+// ✅ Good - Standard components use `web/tailwind-themes/tailwind.config.js` / `web/src/app/css/colors.css`
+<div className="bg-background-neutral-03 text-text-02">
+  Content
+</div>
+
+// ✅ Good - Logo icons with dark mode handling via createLogoIcon
+export const GithubIcon = createLogoIcon(githubLightIcon, {
+  monochromatic: true,  // Will apply dark:invert internally
+});
+
+export const GitbookIcon = createLogoIcon(gitbookLightIcon, {
+  darkSrc: gitbookDarkIcon,  // Will use dark:hidden/dark:block internally
+});
+
+// ❌ Bad - Manual dark mode overrides
+<div className="bg-white dark:bg-black text-black dark:text-white">
+  Content
+</div>
+```
+
+### 6. Class Name Utilities
+
+**Use the `cn` utility instead of raw string formatting for classNames.**
+
+**Reason:** `cn`s are easier to read. They also allow for more complex types (i.e., string-arrays) to get formatted properly (it flattens each element in that string array down). As a result, it can allow things such as conditionals (i.e., `myCondition && "some-tailwind-class"`, which evaluates to `false` when `myCondition` is `false`) to get filtered out.
+
+```typescript
+import { cn } from '@/lib/utils'
+
+// ✅ Good
+<div className={cn(
+  'base-class',
+  isActive && 'active-class',
+  className
+)}>
+  Content
+</div>
+
+// ❌ Bad
+<div className={`base-class ${isActive ? 'active-class' : ''} ${className}`}>
+  Content
+</div>
+```
+
+### 7. Custom Hooks Organization
+
+**Follow a "hook-per-file" layout. Each hook should live in its own file within `web/src/hooks`.**
+
+**Reason:** This is just a layout preference. Keeps code clean.
+
+```typescript
+// web/src/hooks/useUserData.ts
+export function useUserData(userId: string) {
+  // hook implementation
+}
+
+// web/src/hooks/useLocalStorage.ts
+export function useLocalStorage<T>(key: string, initialValue: T) {
+  // hook implementation
+}
+```
+
+### 8. Icon Usage
+
+**ONLY use icons from the `web/src/icons` directory. Do NOT use icons from `react-icons`, `lucide`, or other external libraries.**
+
+**Reason:** We have a very carefully curated selection of icons that match our Onyx guidelines. We do NOT want to muddy those up with different aesthetic stylings.
+
+```typescript
+// ✅ Good
+import SvgX from "@/icons/x";
+import SvgMoreHorizontal from "@/icons/more-horizontal";
+
+// ❌ Bad
+import { User } from "lucide-react";
+import { FiSearch } from "react-icons/fi";
+```
+
+**Missing Icons**: If an icon is needed but doesn't exist in the `web/src/icons` directory, import it from Figma using the Figma MCP tool and add it to the icons directory.
+If you need help with this step, reach out to `raunak@onyx.app`.
+
+### 9. Text Rendering
+
+**Prefer using the `refresh-components/texts/Text` component for all text rendering. Avoid "naked" text nodes.**
+
+**Reason:** The `Text` component is fully compliant with the stylings provided in Figma. It provides easy utilities to specify the text-colour and font-size in the form of flags. Super duper easy.
+
+```typescript
+// ✅ Good
+import { Text } from '@/refresh-components/texts/Text'
+
+function UserCard({ name }: { name: string }) {
+  return (
+    <Text
+      {/* The `text03` flag makes the text it renders to be coloured the 3rd-scale grey */}
+      text03
+      {/* The `mainAction` flag makes the text it renders to be "main-action" font + line-height + weightage, as described in the Figma */}
+      mainAction
+    >
+      {name}
+    </Text>
+  )
+}
+
+// ❌ Bad
+function UserCard({ name }: { name: string }) {
+  return (
+    <div>
+      <h2>{name}</h2>
+      <p>User details</p>
+    </div>
+  )
+}
+```
+
+### 10. Component Usage
+
+**Heavily avoid raw HTML input components. Always use components from the `web/src/refresh-components` or `web/lib/opal/src` directory.**
+
+**Reason:** We've put in a lot of effort to unify the components that are rendered in the Onyx app. Using raw components breaks the entire UI of the application, and leaves it in a muddier state than before.
+
+```typescript
+// ✅ Good
+import Button from '@/refresh-components/buttons/Button'
+import InputTypeIn from '@/refresh-components/inputs/InputTypeIn'
+import SvgPlusCircle from '@/icons/plus-circle'
+
+function ContactForm() {
+  return (
+    <form>
+      <InputTypeIn placeholder="Search..." />
+      <Button type="submit" leftIcon={SvgPlusCircle}>Submit</Button>
+    </form>
+  )
+}
+
+// ❌ Bad
+function ContactForm() {
+  return (
+    <form>
+      <input placeholder="Name" />
+      <textarea placeholder="Message" />
+      <button type="submit">Submit</button>
+    </form>
+  )
+}
+```
+
+### 11. Colors
+
+**Always use custom overrides for colors and borders rather than built in Tailwind CSS colors. These overrides live in `web/tailwind-themes/tailwind.config.js`.**
+
+**Reason:** Our custom color system uses CSS variables that automatically handle dark mode and maintain design consistency across the app. Standard Tailwind colors bypass this system.
+
+**Available color categories:**
+- **Text:** `text-01` through `text-05`, `text-inverted-XX`
+- **Backgrounds:** `background-neutral-XX`, `background-tint-XX` (and inverted variants)
+- **Borders:** `border-01` through `border-05`, `border-inverted-XX`
+- **Actions:** `action-link-XX`, `action-danger-XX`
+- **Status:** `status-info-XX`, `status-success-XX`, `status-warning-XX`, `status-error-XX`
+- **Theme:** `theme-primary-XX`, `theme-red-XX`, `theme-blue-XX`, etc.
+
+```typescript
+// ✅ Good - Use custom Onyx color classes
+<div className="bg-background-neutral-01 border border-border-02" />
+<div className="bg-background-tint-02 border border-border-01" />
+<div className="bg-status-success-01" />
+<div className="bg-action-link-01" />
+<div className="bg-theme-primary-05" />
+
+// ❌ Bad - Do NOT use standard Tailwind colors
+<div className="bg-gray-100 border border-gray-300 text-gray-600" />
+<div className="bg-white border border-slate-200" />
+<div className="bg-green-100 text-green-700" />
+<div className="bg-blue-100 text-blue-600" />
+<div className="bg-indigo-500" />
+```
+
+### 12. Data Fetching
+
+**Prefer using `useSWR` for data fetching. Data should generally be fetched on the client side. Components that need data should display a loader / placeholder while waiting for that data. Prefer loading data within the component that needs it rather than at the top level and passing it down.**
+
+**Reason:** Client side fetching allows us to load the skeleton of the page without waiting for data to load, leading to a snappier UX. Loading data where needed reduces dependencies between a component and its parent component(s).
+
 ## Database & Migrations
 
 ### Running Migrations
@@ -295,14 +575,6 @@ will be tailing their logs to this file.
 - Token management and rate limiting
 - Custom prompts and agent actions
 
-## UI/UX Patterns
-
-- Tailwind CSS with design system in `web/src/components/ui/`
-- Radix UI and Headless UI for accessible components
-- SWR for data fetching and caching
-- Form validation with react-hook-form
-- Error handling with popup notifications
-
 ## Creating a Plan
 When creating a plan in the `plans` directory, make sure to include at least these elements:
 

CLAUDE.md.template

@@ -4,10 +4,10 @@ This file provides guidance to Claude Code (claude.ai/code) when working with co
 
 ## KEY NOTES
 
-- If you run into any missing python dependency errors, try running your command with `source backend/.venv/bin/activate` \
+- If you run into any missing python dependency errors, try running your command with `source .venv/bin/activate` \
 to assume the python venv.
 - To make tests work, check the `.env` file at the root of the project to find an OpenAI key.
-- If using `playwright` to explore the frontend, you can usually log in with username `a@test.com` and password
+- If using `playwright` to explore the frontend, you can usually log in with username `a@example.com` and password
 `a`. The app can be accessed at `http://localhost:3000`.
 - You should assume that all Onyx services are running. To verify, you can check the `backend/log` directory to
 make sure we see logs coming out from the relevant service.
@@ -184,6 +184,286 @@ web/
 └── src/lib/                     # Utilities & business logic
 ```
 
+## Frontend Standards
+
+### 1. Import Standards
+
+**Always use absolute imports with the `@` prefix.**
+
+**Reason:** Moving files around becomes easier since you don't also have to update those import statements. This makes modifications to the codebase much nicer.
+
+```typescript
+// ✅ Good
+import { Button } from "@/components/ui/button";
+import { useAuth } from "@/hooks/useAuth";
+import { Text } from "@/refresh-components/texts/Text";
+
+// ❌ Bad
+import { Button } from "../../../components/ui/button";
+import { useAuth } from "./hooks/useAuth";
+```
+
+### 2. React Component Functions
+
+**Prefer regular functions over arrow functions for React components.**
+
+**Reason:** Functions just become easier to read.
+
+```typescript
+// ✅ Good
+function UserProfile({ userId }: UserProfileProps) {
+  return <div>User Profile</div>
+}
+
+// ❌ Bad
+const UserProfile = ({ userId }: UserProfileProps) => {
+  return <div>User Profile</div>
+}
+```
+
+### 3. Props Interface Extraction
+
+**Extract prop types into their own interface definitions.**
+
+**Reason:** Functions just become easier to read.
+
+```typescript
+// ✅ Good
+interface UserCardProps {
+  user: User
+  showActions?: boolean
+  onEdit?: (userId: string) => void
+}
+
+function UserCard({ user, showActions = false, onEdit }: UserCardProps) {
+  return <div>User Card</div>
+}
+
+// ❌ Bad
+function UserCard({
+  user,
+  showActions = false,
+  onEdit
+}: {
+  user: User
+  showActions?: boolean
+  onEdit?: (userId: string) => void
+}) {
+  return <div>User Card</div>
+}
+```
+
+### 4. Spacing Guidelines
+
+**Prefer padding over margins for spacing.**
+
+**Reason:** We want to consolidate usage to paddings instead of margins.
+
+```typescript
+// ✅ Good
+<div className="p-4 space-y-2">
+  <div className="p-2">Content</div>
+</div>
+
+// ❌ Bad
+<div className="m-4 space-y-2">
+  <div className="m-2">Content</div>
+</div>
+```
+
+### 5. Tailwind Dark Mode
+
+**Strictly forbid using the `dark:` modifier in Tailwind classes, except for logo icon handling.**
+
+**Reason:** The `colors.css` file already, VERY CAREFULLY, defines what the exact opposite colour of each light-mode colour is. Overriding this behaviour is VERY bad and will lead to horrible UI breakages.
+
+**Exception:** The `createLogoIcon` helper in `web/src/components/icons/icons.tsx` uses `dark:` modifiers (`dark:invert`, `dark:hidden`, `dark:block`) to handle third-party logo icons that cannot automatically adapt through `colors.css`. This is the ONLY acceptable use of dark mode modifiers.
+
+```typescript
+// ✅ Good - Standard components use `tailwind-themes/tailwind.config.js` / `src/app/css/colors.css`
+<div className="bg-background-neutral-03 text-text-02">
+  Content
+</div>
+
+// ✅ Good - Logo icons with dark mode handling via createLogoIcon
+export const GithubIcon = createLogoIcon(githubLightIcon, {
+  monochromatic: true,  // Will apply dark:invert internally
+});
+
+export const GitbookIcon = createLogoIcon(gitbookLightIcon, {
+  darkSrc: gitbookDarkIcon,  // Will use dark:hidden/dark:block internally
+});
+
+// ❌ Bad - Manual dark mode overrides
+<div className="bg-white dark:bg-black text-black dark:text-white">
+  Content
+</div>
+```
+
+### 6. Class Name Utilities
+
+**Use the `cn` utility instead of raw string formatting for classNames.**
+
+**Reason:** `cn`s are easier to read. They also allow for more complex types (i.e., string-arrays) to get formatted properly (it flattens each element in that string array down). As a result, it can allow things such as conditionals (i.e., `myCondition && "some-tailwind-class"`, which evaluates to `false` when `myCondition` is `false`) to get filtered out.
+
+```typescript
+import { cn } from '@/lib/utils'
+
+// ✅ Good
+<div className={cn(
+  'base-class',
+  isActive && 'active-class',
+  className
+)}>
+  Content
+</div>
+
+// ❌ Bad
+<div className={`base-class ${isActive ? 'active-class' : ''} ${className}`}>
+  Content
+</div>
+```
+
+### 7. Custom Hooks Organization
+
+**Follow a "hook-per-file" layout. Each hook should live in its own file within `web/src/hooks`.**
+
+**Reason:** This is just a layout preference. Keeps code clean.
+
+```typescript
+// web/src/hooks/useUserData.ts
+export function useUserData(userId: string) {
+  // hook implementation
+}
+
+// web/src/hooks/useLocalStorage.ts
+export function useLocalStorage<T>(key: string, initialValue: T) {
+  // hook implementation
+}
+```
+
+### 8. Icon Usage
+
+**ONLY use icons from the `web/src/icons` directory. Do NOT use icons from `react-icons`, `lucide`, or other external libraries.**
+
+**Reason:** We have a very carefully curated selection of icons that match our Onyx guidelines. We do NOT want to muddy those up with different aesthetic stylings.
+
+```typescript
+// ✅ Good
+import SvgX from "@/icons/x";
+import SvgMoreHorizontal from "@/icons/more-horizontal";
+
+// ❌ Bad
+import { User } from "lucide-react";
+import { FiSearch } from "react-icons/fi";
+```
+
+**Missing Icons**: If an icon is needed but doesn't exist in the `web/src/icons` directory, import it from Figma using the Figma MCP tool and add it to the icons directory.
+If you need help with this step, reach out to `raunak@onyx.app`.
+
+### 9. Text Rendering
+
+**Prefer using the `refresh-components/texts/Text` component for all text rendering. Avoid "naked" text nodes.**
+
+**Reason:** The `Text` component is fully compliant with the stylings provided in Figma. It provides easy utilities to specify the text-colour and font-size in the form of flags. Super duper easy.
+
+```typescript
+// ✅ Good
+import { Text } from '@/refresh-components/texts/Text'
+
+function UserCard({ name }: { name: string }) {
+  return (
+    <Text
+      {/* The `text03` flag makes the text it renders to be coloured the 3rd-scale grey */}
+      text03
+      {/* The `mainAction` flag makes the text it renders to be "main-action" font + line-height + weightage, as described in the Figma */}
+      mainAction
+    >
+      {name}
+    </Text>
+  )
+}
+
+// ❌ Bad
+function UserCard({ name }: { name: string }) {
+  return (
+    <div>
+      <h2>{name}</h2>
+      <p>User details</p>
+    </div>
+  )
+}
+```
+
+### 10. Component Usage
+
+**Heavily avoid raw HTML input components. Always use components from the `web/src/refresh-components` or `web/lib/opal/src` directory.**
+
+**Reason:** We've put in a lot of effort to unify the components that are rendered in the Onyx app. Using raw components breaks the entire UI of the application, and leaves it in a muddier state than before.
+
+```typescript
+// ✅ Good
+import Button from '@/refresh-components/buttons/Button'
+import InputTypeIn from '@/refresh-components/inputs/InputTypeIn'
+import SvgPlusCircle from '@/icons/plus-circle'
+
+function ContactForm() {
+  return (
+    <form>
+      <InputTypeIn placeholder="Search..." />
+      <Button type="submit" leftIcon={SvgPlusCircle}>Submit</Button>
+    </form>
+  )
+}
+
+// ❌ Bad
+function ContactForm() {
+  return (
+    <form>
+      <input placeholder="Name" />
+      <textarea placeholder="Message" />
+      <button type="submit">Submit</button>
+    </form>
+  )
+}
+```
+
+### 11. Colors
+
+**Always use custom overrides for colors and borders rather than built in Tailwind CSS colors. These overrides live in `web/tailwind-themes/tailwind.config.js`.**
+
+**Reason:** Our custom color system uses CSS variables that automatically handle dark mode and maintain design consistency across the app. Standard Tailwind colors bypass this system.
+
+**Available color categories:**
+- **Text:** `text-01` through `text-05`, `text-inverted-XX`
+- **Backgrounds:** `background-neutral-XX`, `background-tint-XX` (and inverted variants)
+- **Borders:** `border-01` through `border-05`, `border-inverted-XX`
+- **Actions:** `action-link-XX`, `action-danger-XX`
+- **Status:** `status-info-XX`, `status-success-XX`, `status-warning-XX`, `status-error-XX`
+- **Theme:** `theme-primary-XX`, `theme-red-XX`, `theme-blue-XX`, etc.
+
+```typescript
+// ✅ Good - Use custom Onyx color classes
+<div className="bg-background-neutral-01 border border-border-02" />
+<div className="bg-background-tint-02 border border-border-01" />
+<div className="bg-status-success-01" />
+<div className="bg-action-link-01" />
+<div className="bg-theme-primary-05" />
+
+// ❌ Bad - Do NOT use standard Tailwind colors
+<div className="bg-gray-100 border border-gray-300 text-gray-600" />
+<div className="bg-white border border-slate-200" />
+<div className="bg-green-100 text-green-700" />
+<div className="bg-blue-100 text-blue-600" />
+<div className="bg-indigo-500" />
+```
+
+### 12. Data Fetching
+
+**Prefer using `useSWR` for data fetching. Data should generally be fetched on the client side. Components that need data should display a loader / placeholder while waiting for that data. Prefer loading data within the component that needs it rather than at the top level and passing it down.**
+
+**Reason:** Client side fetching allows us to load the skeleton of the page without waiting for data to load, leading to a snappier UX. Loading data where needed reduces dependencies between a component and its parent component(s).
+
 ## Database & Migrations
 
 ### Running Migrations
@@ -300,14 +580,6 @@ will be tailing their logs to this file.
 - Token management and rate limiting
 - Custom prompts and agent actions
 
-## UI/UX Patterns
-
-- Tailwind CSS with design system in `web/src/components/ui/`
-- Radix UI and Headless UI for accessible components
-- SWR for data fetching and caching
-- Form validation with react-hook-form
-- Error handling with popup notifications
-
 ## Creating a Plan
 When creating a plan in the `plans` directory, make sure to include at least these elements:
 

CONTRIBUTING.md

@@ -71,12 +71,12 @@ If using a higher version, sometimes some libraries will not be available (i.e.
 
 #### Backend: Python requirements
 
-Currently, we use pip and recommend creating a virtual environment.
+Currently, we use [uv](https://docs.astral.sh/uv/) and recommend creating a [virtual environment](https://docs.astral.sh/uv/pip/environments/#using-a-virtual-environment).
 
 For convenience here's a command for it:
 
 ```bash
-python -m venv .venv
+uv venv .venv --python 3.11
 source .venv/bin/activate
 ```
 
@@ -95,33 +95,15 @@ If using PowerShell, the command slightly differs:
 Install the required python dependencies:
 
 ```bash
-pip install -r backend/requirements/combined.txt
+uv sync --all-extras
 ```
 
-or
+Install Playwright for Python (headless browser required by the Web Connector):
 
 ```bash
-pip install -r backend/requirements/default.txt
-pip install -r backend/requirements/dev.txt
-pip install -r backend/requirements/ee.txt
-pip install -r backend/requirements/model_server.txt
+uv run playwright install
 ```
 
-Fix vscode/cursor auto-imports:
-```bash
-pip install -e .
-```
-
-Install Playwright for Python (headless browser required by the Web Connector)
-
-In the activated Python virtualenv, install Playwright for Python by running:
-
-```bash
-playwright install
-```
-
-You may have to deactivate and reactivate your virtualenv for `playwright` to appear on your path.
-
 #### Frontend: Node dependencies
 
 Onyx uses Node v22.20.0. We highly recommend you use [Node Version Manager (nvm)](https://github.com/nvm-sh/nvm)
@@ -130,7 +112,7 @@ to manage your Node installations. Once installed, you can run
 ```bash
 nvm install 22 && nvm use 22
 node -v # verify your active version
-``` 
+```
 
 Navigate to `onyx/web` and run:
 
@@ -144,21 +126,15 @@ npm i
 
 For the backend, you'll need to setup pre-commit hooks (black / reorder-python-imports).
 
-With the virtual environment active, install the pre-commit library with:
+Then run:
 
 ```bash
-pip install pre-commit
-```
-
-Then, from the `onyx/backend` directory, run:
-
-```bash
-pre-commit install
+uv run pre-commit install
 ```
 
 Additionally, we use `mypy` for static type checking.
 Onyx is fully type-annotated, and we want to keep it that way!
-To run the mypy checks manually, run `python -m mypy .` from the `onyx/backend` directory.
+To run the mypy checks manually, run `uv run mypy .` from the `onyx/backend` directory.
 
 ### Web
 
@@ -185,7 +161,7 @@ You will need Docker installed to run these containers.
 First navigate to `onyx/deployment/docker_compose`, then start up Postgres/Vespa/Redis/MinIO with:
 
 ```bash
-docker compose up -d index relational_db cache minio
+docker compose -f docker-compose.yml -f docker-compose.dev.yml up -d index relational_db cache minio
 ```
 
 (index refers to Vespa, relational_db refers to Postgres, and cache refers to Redis)

backend/.dockerignore

@@ -15,3 +15,4 @@ build/
 dist/
 .coverage
 htmlcov/
+model_server/legacy/

backend/Dockerfile.model_server

@@ -13,23 +13,10 @@ RUN uv pip install --system --no-cache-dir --upgrade \
         -r /tmp/requirements.txt && \
     rm -rf ~/.cache/uv /tmp/*.txt
 
-# Stage for downloading tokenizers
-FROM base AS tokenizers
-RUN python -c "from transformers import AutoTokenizer; \
-AutoTokenizer.from_pretrained('distilbert-base-uncased'); \
-AutoTokenizer.from_pretrained('mixedbread-ai/mxbai-rerank-xsmall-v1');"
-
-# Stage for downloading Onyx models
-FROM base AS onyx-models
-RUN python -c "from huggingface_hub import snapshot_download; \
-snapshot_download(repo_id='onyx-dot-app/hybrid-intent-token-classifier'); \
-snapshot_download(repo_id='onyx-dot-app/information-content-model');"
-
-# Stage for downloading embedding and reranking models
+# Stage for downloading embedding models
 FROM base AS embedding-models
 RUN python -c "from huggingface_hub import snapshot_download; \
-snapshot_download('nomic-ai/nomic-embed-text-v1'); \
-snapshot_download('mixedbread-ai/mxbai-rerank-xsmall-v1');"
+snapshot_download('nomic-ai/nomic-embed-text-v1');"
 
 # Initialize SentenceTransformer to cache the custom architecture
 RUN python -c "from sentence_transformers import SentenceTransformer; \
@@ -54,8 +41,6 @@ RUN groupadd -g 1001 onyx && \
 # In case the user has volumes mounted to /app/.cache/huggingface that they've downloaded while
 # running Onyx, move the current contents of the cache folder to a temporary location to ensure
 # it's preserved in order to combine with the user's cache contents
-COPY --chown=onyx:onyx --from=tokenizers /app/.cache/huggingface /app/.cache/temp_huggingface
-COPY --chown=onyx:onyx --from=onyx-models /app/.cache/huggingface /app/.cache/temp_huggingface
 COPY --chown=onyx:onyx --from=embedding-models /app/.cache/huggingface /app/.cache/temp_huggingface
 
 WORKDIR /app

backend/alembic/README.md

@@ -7,8 +7,12 @@ Onyx migrations use a generic single-database configuration with an async dbapi.
 
 ## To generate new migrations:
 
-run from onyx/backend:
-`alembic revision --autogenerate -m <DESCRIPTION_OF_MIGRATION>`
+From onyx/backend, run:
+`alembic revision -m <DESCRIPTION_OF_MIGRATION>`
+
+Note: you cannot use the `--autogenerate` flag as the automatic schema parsing does not work.
+
+Manually populate the upgrade and downgrade in your new migration.
 
 More info can be found here: https://alembic.sqlalchemy.org/en/latest/autogenerate.html
 

backend/alembic/env.py

@@ -39,7 +39,9 @@ config = context.config
 if config.config_file_name is not None and config.attributes.get(
     "configure_logger", True
 ):
-    fileConfig(config.config_file_name)
+    # disable_existing_loggers=False prevents breaking pytest's caplog fixture
+    # See: https://pytest-alembic.readthedocs.io/en/latest/setup.html#caplog-issues
+    fileConfig(config.config_file_name, disable_existing_loggers=False)
 
 target_metadata = [Base.metadata, ResultModelBase.metadata]
 
@@ -460,8 +462,49 @@ def run_migrations_offline() -> None:
 
 
 def run_migrations_online() -> None:
-    logger.info("run_migrations_online starting.")
-    asyncio.run(run_async_migrations())
+    """Run migrations in 'online' mode.
+
+    Supports pytest-alembic by checking for a pre-configured connection
+    in context.config.attributes["connection"]. If present, uses that
+    connection/engine directly instead of creating a new async engine.
+    """
+    # Check if pytest-alembic is providing a connection/engine
+    connectable = context.config.attributes.get("connection", None)
+
+    if connectable is not None:
+        # pytest-alembic is providing an engine - use it directly
+        logger.info("run_migrations_online starting (pytest-alembic mode).")
+
+        # For pytest-alembic, we use the default schema (public)
+        schema_name = context.config.attributes.get(
+            "schema_name", POSTGRES_DEFAULT_SCHEMA
+        )
+
+        # pytest-alembic passes an Engine, we need to get a connection from it
+        with connectable.connect() as connection:
+            # Set search path for the schema
+            connection.execute(text(f'SET search_path TO "{schema_name}"'))
+
+            context.configure(
+                connection=connection,
+                target_metadata=target_metadata,  # type: ignore
+                include_object=include_object,
+                version_table_schema=schema_name,
+                include_schemas=True,
+                compare_type=True,
+                compare_server_default=True,
+                script_location=config.get_main_option("script_location"),
+            )
+
+            with context.begin_transaction():
+                context.run_migrations()
+
+            # Commit the transaction to ensure changes are visible to next migration
+            connection.commit()
+    else:
+        # Normal operation - use async migrations
+        logger.info("run_migrations_online starting.")
+        asyncio.run(run_async_migrations())
 
 
 if context.is_offline_mode():

backend/alembic/versions/18b5b2524446_add_is_clarification_to_chat_message.py

@@ -0,0 +1,29 @@
+"""add is_clarification to chat_message
+
+Revision ID: 18b5b2524446
+Revises: 87c52ec39f84
+Create Date: 2025-01-16
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "18b5b2524446"
+down_revision = "87c52ec39f84"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "chat_message",
+        sa.Column(
+            "is_clarification", sa.Boolean(), nullable=False, server_default="false"
+        ),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("chat_message", "is_clarification")

backend/alembic/versions/23957775e5f5_remove_feedback_foreignkey_constraint.py

@@ -12,8 +12,8 @@ import sqlalchemy as sa
 # revision identifiers, used by Alembic.
 revision = "23957775e5f5"
 down_revision = "bc9771dccadf"
-branch_labels = None  # type: ignore
-depends_on = None  # type: ignore
+branch_labels = None
+depends_on = None
 
 
 def upgrade() -> None:

backend/alembic/versions/2a391f840e85_add_last_refreshed_at_mcp_server.py

@@ -0,0 +1,27 @@
+"""add last refreshed at mcp server
+
+Revision ID: 2a391f840e85
+Revises: 4cebcbc9b2ae
+Create Date: 2025-12-06 15:19:59.766066
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembi.
+revision = "2a391f840e85"
+down_revision = "4cebcbc9b2ae"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "mcp_server",
+        sa.Column("last_refreshed_at", sa.DateTime(timezone=True), nullable=True),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("mcp_server", "last_refreshed_at")

backend/alembic/versions/2b90f3af54b8_usage_limits.py

@@ -0,0 +1,46 @@
+"""usage_limits
+
+Revision ID: 2b90f3af54b8
+Revises: 9a0296d7421e
+Create Date: 2026-01-03 16:55:30.449692
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "2b90f3af54b8"
+down_revision = "9a0296d7421e"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.create_table(
+        "tenant_usage",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column(
+            "window_start", sa.DateTime(timezone=True), nullable=False, index=True
+        ),
+        sa.Column("llm_cost_cents", sa.Float(), nullable=False, server_default="0.0"),
+        sa.Column("chunks_indexed", sa.Integer(), nullable=False, server_default="0"),
+        sa.Column("api_calls", sa.Integer(), nullable=False, server_default="0"),
+        sa.Column(
+            "non_streaming_api_calls", sa.Integer(), nullable=False, server_default="0"
+        ),
+        sa.Column(
+            "updated_at",
+            sa.DateTime(timezone=True),
+            server_default=sa.func.now(),
+            nullable=True,
+        ),
+        sa.PrimaryKeyConstraint("id"),
+        sa.UniqueConstraint("window_start", name="uq_tenant_usage_window"),
+    )
+
+
+def downgrade() -> None:
+    op.drop_index("ix_tenant_usage_window_start", table_name="tenant_usage")
+    op.drop_table("tenant_usage")

backend/alembic/versions/47a07e1a38f1_fix_invalid_model_configurations_state.py

@@ -11,7 +11,7 @@ from pydantic import BaseModel, ConfigDict
 import sqlalchemy as sa
 from sqlalchemy.dialects import postgresql
 
-from onyx.llm.llm_provider_options import (
+from onyx.llm.well_known_providers.llm_provider_options import (
     fetch_model_names_for_provider_as_set,
     fetch_visible_model_names_for_provider_as_set,
 )

backend/alembic/versions/4cebcbc9b2ae_add_tab_index_to_tool_call.py

@@ -0,0 +1,27 @@
+"""add tab_index to tool_call
+
+Revision ID: 4cebcbc9b2ae
+Revises: a1b2c3d4e5f6
+Create Date: 2025-12-16
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "4cebcbc9b2ae"
+down_revision = "a1b2c3d4e5f6"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "tool_call",
+        sa.Column("tab_index", sa.Integer(), nullable=False, server_default="0"),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("tool_call", "tab_index")

backend/alembic/versions/4ea2c93919c1_add_type_to_credentials.py

@@ -62,6 +62,11 @@ def upgrade() -> None:
     )
     """
     )
+
+    # Drop the temporary table to avoid conflicts if migration runs again
+    # (e.g., during upgrade -> downgrade -> upgrade cycles in tests)
+    op.execute("DROP TABLE IF EXISTS temp_connector_credential")
+
     # If no exception was raised, alter the column
     op.alter_column("credential", "source", nullable=True)  # TODO modify
     # # ### end Alembic commands ###

backend/alembic/versions/4f8a2b3c1d9e_add_open_url_tool.py

@@ -0,0 +1,104 @@
+"""add_open_url_tool
+
+Revision ID: 4f8a2b3c1d9e
+Revises: a852cbe15577
+Create Date: 2025-11-24 12:00:00.000000
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "4f8a2b3c1d9e"
+down_revision = "a852cbe15577"
+branch_labels = None
+depends_on = None
+
+
+OPEN_URL_TOOL = {
+    "name": "OpenURLTool",
+    "display_name": "Open URL",
+    "description": (
+        "The Open URL Action allows the agent to fetch and read contents of web pages."
+    ),
+    "in_code_tool_id": "OpenURLTool",
+    "enabled": True,
+}
+
+
+def upgrade() -> None:
+    conn = op.get_bind()
+
+    # Check if tool already exists
+    existing = conn.execute(
+        sa.text("SELECT id FROM tool WHERE in_code_tool_id = :in_code_tool_id"),
+        {"in_code_tool_id": OPEN_URL_TOOL["in_code_tool_id"]},
+    ).fetchone()
+
+    if existing:
+        tool_id = existing[0]
+        # Update existing tool
+        conn.execute(
+            sa.text(
+                """
+                UPDATE tool
+                SET name = :name,
+                    display_name = :display_name,
+                    description = :description
+                WHERE in_code_tool_id = :in_code_tool_id
+                """
+            ),
+            OPEN_URL_TOOL,
+        )
+    else:
+        # Insert new tool
+        conn.execute(
+            sa.text(
+                """
+                INSERT INTO tool (name, display_name, description, in_code_tool_id, enabled)
+                VALUES (:name, :display_name, :description, :in_code_tool_id, :enabled)
+                """
+            ),
+            OPEN_URL_TOOL,
+        )
+        # Get the newly inserted tool's id
+        result = conn.execute(
+            sa.text("SELECT id FROM tool WHERE in_code_tool_id = :in_code_tool_id"),
+            {"in_code_tool_id": OPEN_URL_TOOL["in_code_tool_id"]},
+        ).fetchone()
+        tool_id = result[0]  # type: ignore
+
+    # Associate the tool with all existing personas
+    # Get all persona IDs
+    persona_ids = conn.execute(sa.text("SELECT id FROM persona")).fetchall()
+
+    for (persona_id,) in persona_ids:
+        # Check if association already exists
+        exists = conn.execute(
+            sa.text(
+                """
+                SELECT 1 FROM persona__tool
+                WHERE persona_id = :persona_id AND tool_id = :tool_id
+                """
+            ),
+            {"persona_id": persona_id, "tool_id": tool_id},
+        ).fetchone()
+
+        if not exists:
+            conn.execute(
+                sa.text(
+                    """
+                    INSERT INTO persona__tool (persona_id, tool_id)
+                    VALUES (:persona_id, :tool_id)
+                    """
+                ),
+                {"persona_id": persona_id, "tool_id": tool_id},
+            )
+
+
+def downgrade() -> None:
+    # We don't remove the tool on downgrade since it's fine to have it around.
+    # If we upgrade again, it will be a no-op.
+    pass

backend/alembic/versions/5c3dca366b35_backend_driven_notification_details.py

@@ -0,0 +1,35 @@
+"""backend driven notification details
+
+Revision ID: 5c3dca366b35
+Revises: 9087b548dd69
+Create Date: 2026-01-06 16:03:11.413724
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "5c3dca366b35"
+down_revision = "9087b548dd69"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "notification",
+        sa.Column(
+            "title", sa.String(), nullable=False, server_default="New Notification"
+        ),
+    )
+    op.add_column(
+        "notification",
+        sa.Column("description", sa.String(), nullable=True, server_default=""),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("notification", "title")
+    op.drop_column("notification", "description")

backend/alembic/versions/5e6f7a8b9c0d_update_default_persona_prompt.py

@@ -0,0 +1,55 @@
+"""update_default_persona_prompt
+
+Revision ID: 5e6f7a8b9c0d
+Revises: 4f8a2b3c1d9e
+Create Date: 2025-11-30 12:00:00.000000
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "5e6f7a8b9c0d"
+down_revision = "4f8a2b3c1d9e"
+branch_labels = None
+depends_on = None
+
+
+DEFAULT_PERSONA_ID = 0
+
+# ruff: noqa: E501, W605 start
+DEFAULT_SYSTEM_PROMPT = """
+You are a highly capable, thoughtful, and precise assistant. Your goal is to deeply understand the user's intent, ask clarifying questions when needed, think step-by-step through complex problems, provide clear and accurate answers, and proactively anticipate helpful follow-up information. Always prioritize being truthful, nuanced, insightful, and efficient.
+
+The current date is [[CURRENT_DATETIME]].{citation_reminder_or_empty}
+
+# Response Style
+You use different text styles, bolding, emojis (sparingly), block quotes, and other formatting to make your responses more readable and engaging.
+You use proper Markdown and LaTeX to format your responses for math, scientific, and chemical formulas, symbols, etc.: '$$\\n[expression]\\n$$' for standalone cases and '\\( [expression] \\)' when inline.
+For code you prefer to use Markdown and specify the language.
+You can use horizontal rules (---) to separate sections of your responses.
+You can use Markdown tables to format your responses for data, lists, and other structured information.
+""".lstrip()
+# ruff: noqa: E501, W605 end
+
+
+def upgrade() -> None:
+    conn = op.get_bind()
+    conn.execute(
+        sa.text(
+            """
+            UPDATE persona
+            SET system_prompt = :system_prompt
+            WHERE id = :persona_id
+            """
+        ),
+        {"system_prompt": DEFAULT_SYSTEM_PROMPT, "persona_id": DEFAULT_PERSONA_ID},
+    )
+
+
+def downgrade() -> None:
+    # We don't revert the system prompt on downgrade since we don't know
+    # what the previous value was. The new prompt is a reasonable default.
+    pass

backend/alembic/versions/6436661d5b65_add_created_at_in_project_userfile.py

@@ -0,0 +1,44 @@
+"""add_created_at_in_project_userfile
+
+Revision ID: 6436661d5b65
+Revises: c7e9f4a3b2d1
+Create Date: 2025-11-24 11:50:24.536052
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "6436661d5b65"
+down_revision = "c7e9f4a3b2d1"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # Add created_at column to project__user_file table
+    op.add_column(
+        "project__user_file",
+        sa.Column(
+            "created_at",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+    )
+    # Add composite index on (project_id, created_at DESC)
+    op.create_index(
+        "ix_project__user_file_project_id_created_at",
+        "project__user_file",
+        ["project_id", sa.text("created_at DESC")],
+    )
+
+
+def downgrade() -> None:
+    # Remove composite index on (project_id, created_at)
+    op.drop_index(
+        "ix_project__user_file_project_id_created_at", table_name="project__user_file"
+    )
+    # Remove created_at column from project__user_file table
+    op.drop_column("project__user_file", "created_at")

backend/alembic/versions/699221885109_nullify_default_task_prompt.py

@@ -0,0 +1,75 @@
+"""nullify_default_task_prompt
+
+Revision ID: 699221885109
+Revises: 7e490836d179
+Create Date: 2025-12-30 10:00:00.000000
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "699221885109"
+down_revision = "7e490836d179"
+branch_labels = None
+depends_on = None
+
+DEFAULT_PERSONA_ID = 0
+
+
+def upgrade() -> None:
+    # Make task_prompt column nullable
+    # Note: The model had nullable=True but the DB column was NOT NULL until this point
+    op.alter_column(
+        "persona",
+        "task_prompt",
+        nullable=True,
+    )
+
+    # Set task_prompt to NULL for the default persona
+    conn = op.get_bind()
+    conn.execute(
+        sa.text(
+            """
+            UPDATE persona
+            SET task_prompt = NULL
+            WHERE id = :persona_id
+            """
+        ),
+        {"persona_id": DEFAULT_PERSONA_ID},
+    )
+
+
+def downgrade() -> None:
+    # Restore task_prompt to empty string for the default persona
+    conn = op.get_bind()
+    conn.execute(
+        sa.text(
+            """
+            UPDATE persona
+            SET task_prompt = ''
+            WHERE id = :persona_id AND task_prompt IS NULL
+            """
+        ),
+        {"persona_id": DEFAULT_PERSONA_ID},
+    )
+
+    # Set any remaining NULL task_prompts to empty string before making non-nullable
+    conn.execute(
+        sa.text(
+            """
+            UPDATE persona
+            SET task_prompt = ''
+            WHERE task_prompt IS NULL
+            """
+        )
+    )
+
+    # Revert task_prompt column to not nullable
+    op.alter_column(
+        "persona",
+        "task_prompt",
+        nullable=False,
+    )

backend/alembic/versions/7206234e012a_add_image_generation_config_table.py

@@ -0,0 +1,54 @@
+"""add image generation config table
+
+Revision ID: 7206234e012a
+Revises: 699221885109
+Create Date: 2025-12-21 00:00:00.000000
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "7206234e012a"
+down_revision = "699221885109"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.create_table(
+        "image_generation_config",
+        sa.Column("image_provider_id", sa.String(), primary_key=True),
+        sa.Column("model_configuration_id", sa.Integer(), nullable=False),
+        sa.Column("is_default", sa.Boolean(), nullable=False),
+        sa.ForeignKeyConstraint(
+            ["model_configuration_id"],
+            ["model_configuration.id"],
+            ondelete="CASCADE",
+        ),
+    )
+    op.create_index(
+        "ix_image_generation_config_is_default",
+        "image_generation_config",
+        ["is_default"],
+        unique=False,
+    )
+    op.create_index(
+        "ix_image_generation_config_model_configuration_id",
+        "image_generation_config",
+        ["model_configuration_id"],
+        unique=False,
+    )
+
+
+def downgrade() -> None:
+    op.drop_index(
+        "ix_image_generation_config_model_configuration_id",
+        table_name="image_generation_config",
+    )
+    op.drop_index(
+        "ix_image_generation_config_is_default", table_name="image_generation_config"
+    )
+    op.drop_table("image_generation_config")

backend/alembic/versions/7a70b7664e37_add_model_configuration_table.py

@@ -10,7 +10,7 @@ from alembic import op
 import sqlalchemy as sa
 from sqlalchemy.dialects import postgresql
 
-from onyx.llm.llm_provider_options import (
+from onyx.llm.well_known_providers.llm_provider_options import (
     fetch_model_names_for_provider_as_set,
     fetch_visible_model_names_for_provider_as_set,
 )

backend/alembic/versions/7bd55f264e1b_add_display_name_to_model_configuration.py

@@ -0,0 +1,27 @@
+"""Add display_name to model_configuration
+
+Revision ID: 7bd55f264e1b
+Revises: e8f0d2a38171
+Create Date: 2025-12-04
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "7bd55f264e1b"
+down_revision = "e8f0d2a38171"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "model_configuration",
+        sa.Column("display_name", sa.String(), nullable=True),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("model_configuration", "display_name")

backend/alembic/versions/7e490836d179_nullify_default_system_prompt.py

@@ -0,0 +1,80 @@
+"""nullify_default_system_prompt
+
+Revision ID: 7e490836d179
+Revises: c1d2e3f4a5b6
+Create Date: 2025-12-29 16:54:36.635574
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "7e490836d179"
+down_revision = "c1d2e3f4a5b6"
+branch_labels = None
+depends_on = None
+
+
+# This is the default system prompt from the previous migration (87c52ec39f84)
+# ruff: noqa: E501, W605 start
+PREVIOUS_DEFAULT_SYSTEM_PROMPT = """
+You are a highly capable, thoughtful, and precise assistant. Your goal is to deeply understand the user's intent, ask clarifying questions when needed, think step-by-step through complex problems, provide clear and accurate answers, and proactively anticipate helpful follow-up information. Always prioritize being truthful, nuanced, insightful, and efficient.
+
+The current date is [[CURRENT_DATETIME]].[[CITATION_GUIDANCE]]
+
+# Response Style
+You use different text styles, bolding, emojis (sparingly), block quotes, and other formatting to make your responses more readable and engaging.
+You use proper Markdown and LaTeX to format your responses for math, scientific, and chemical formulas, symbols, etc.: '$$\\n[expression]\\n$$' for standalone cases and '\\( [expression] \\)' when inline.
+For code you prefer to use Markdown and specify the language.
+You can use horizontal rules (---) to separate sections of your responses.
+You can use Markdown tables to format your responses for data, lists, and other structured information.
+""".lstrip()
+# ruff: noqa: E501, W605 end
+
+
+def upgrade() -> None:
+    # Make system_prompt column nullable (model already has nullable=True but DB doesn't)
+    op.alter_column(
+        "persona",
+        "system_prompt",
+        nullable=True,
+    )
+
+    # Set system_prompt to NULL where it matches the previous default
+    conn = op.get_bind()
+    conn.execute(
+        sa.text(
+            """
+            UPDATE persona
+            SET system_prompt = NULL
+            WHERE system_prompt = :previous_default
+            """
+        ),
+        {"previous_default": PREVIOUS_DEFAULT_SYSTEM_PROMPT},
+    )
+
+
+def downgrade() -> None:
+    # Restore the default system prompt for personas that have NULL
+    # Note: This may restore the prompt to personas that originally had NULL
+    # before this migration, but there's no way to distinguish them
+    conn = op.get_bind()
+    conn.execute(
+        sa.text(
+            """
+            UPDATE persona
+            SET system_prompt = :previous_default
+            WHERE system_prompt IS NULL
+            """
+        ),
+        {"previous_default": PREVIOUS_DEFAULT_SYSTEM_PROMPT},
+    )
+
+    # Revert system_prompt column to not nullable
+    op.alter_column(
+        "persona",
+        "system_prompt",
+        nullable=False,
+    )

backend/alembic/versions/7ed603b64d5a_add_mcp_server_and_connection_config_.py

@@ -42,13 +42,13 @@ def upgrade() -> None:
         sa.Column(
             "created_at",
             sa.DateTime(timezone=True),
-            server_default=sa.text("now()"),  # type: ignore
+            server_default=sa.text("now()"),
             nullable=False,
         ),
         sa.Column(
             "updated_at",
             sa.DateTime(timezone=True),
-            server_default=sa.text("now()"),  # type: ignore
+            server_default=sa.text("now()"),
             nullable=False,
         ),
     )
@@ -63,13 +63,13 @@ def upgrade() -> None:
         sa.Column(
             "created_at",
             sa.DateTime(timezone=True),
-            server_default=sa.text("now()"),  # type: ignore
+            server_default=sa.text("now()"),
             nullable=False,
         ),
         sa.Column(
             "updated_at",
             sa.DateTime(timezone=True),
-            server_default=sa.text("now()"),  # type: ignore
+            server_default=sa.text("now()"),
             nullable=False,
         ),
         sa.ForeignKeyConstraint(

backend/alembic/versions/87c52ec39f84_update_default_system_prompt.py

@@ -0,0 +1,55 @@
+"""update_default_system_prompt
+
+Revision ID: 87c52ec39f84
+Revises: 7bd55f264e1b
+Create Date: 2025-12-05 15:54:06.002452
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "87c52ec39f84"
+down_revision = "7bd55f264e1b"
+branch_labels = None
+depends_on = None
+
+
+DEFAULT_PERSONA_ID = 0
+
+# ruff: noqa: E501, W605 start
+DEFAULT_SYSTEM_PROMPT = """
+You are a highly capable, thoughtful, and precise assistant. Your goal is to deeply understand the user's intent, ask clarifying questions when needed, think step-by-step through complex problems, provide clear and accurate answers, and proactively anticipate helpful follow-up information. Always prioritize being truthful, nuanced, insightful, and efficient.
+
+The current date is [[CURRENT_DATETIME]].[[CITATION_GUIDANCE]]
+
+# Response Style
+You use different text styles, bolding, emojis (sparingly), block quotes, and other formatting to make your responses more readable and engaging.
+You use proper Markdown and LaTeX to format your responses for math, scientific, and chemical formulas, symbols, etc.: '$$\\n[expression]\\n$$' for standalone cases and '\\( [expression] \\)' when inline.
+For code you prefer to use Markdown and specify the language.
+You can use horizontal rules (---) to separate sections of your responses.
+You can use Markdown tables to format your responses for data, lists, and other structured information.
+""".lstrip()
+# ruff: noqa: E501, W605 end
+
+
+def upgrade() -> None:
+    conn = op.get_bind()
+    conn.execute(
+        sa.text(
+            """
+            UPDATE persona
+            SET system_prompt = :system_prompt
+            WHERE id = :persona_id
+            """
+        ),
+        {"system_prompt": DEFAULT_SYSTEM_PROMPT, "persona_id": DEFAULT_PERSONA_ID},
+    )
+
+
+def downgrade() -> None:
+    # We don't revert the system prompt on downgrade since we don't know
+    # what the previous value was. The new prompt is a reasonable default.
+    pass

backend/alembic/versions/9087b548dd69_seed_default_image_gen_config.py

@@ -0,0 +1,136 @@
+"""seed_default_image_gen_config
+
+Revision ID: 9087b548dd69
+Revises: 2b90f3af54b8
+Create Date: 2026-01-05 00:00:00.000000
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "9087b548dd69"
+down_revision = "2b90f3af54b8"
+branch_labels = None
+depends_on = None
+
+# Constants for default image generation config
+# Source: web/src/app/admin/configuration/image-generation/constants.ts
+IMAGE_PROVIDER_ID = "openai_gpt_image_1"
+MODEL_NAME = "gpt-image-1"
+PROVIDER_NAME = "openai"
+
+
+def upgrade() -> None:
+    conn = op.get_bind()
+
+    # Check if image_generation_config table already has records
+    existing_configs = (
+        conn.execute(sa.text("SELECT COUNT(*) FROM image_generation_config")).scalar()
+        or 0
+    )
+
+    if existing_configs > 0:
+        # Skip if configs already exist - user may have configured manually
+        return
+
+    # Find the first OpenAI LLM provider
+    openai_provider = conn.execute(
+        sa.text(
+            """
+            SELECT id, api_key
+            FROM llm_provider
+            WHERE provider = :provider
+            ORDER BY id
+            LIMIT 1
+            """
+        ),
+        {"provider": PROVIDER_NAME},
+    ).fetchone()
+
+    if not openai_provider:
+        # No OpenAI provider found - nothing to do
+        return
+
+    source_provider_id, api_key = openai_provider
+
+    # Create new LLM provider for image generation (clone only api_key)
+    result = conn.execute(
+        sa.text(
+            """
+            INSERT INTO llm_provider (
+                name, provider, api_key, api_base, api_version,
+                deployment_name, default_model_name, is_public,
+                is_default_provider, is_default_vision_provider, is_auto_mode
+            )
+            VALUES (
+                :name, :provider, :api_key, NULL, NULL,
+                NULL, :default_model_name, :is_public,
+                NULL, NULL, :is_auto_mode
+            )
+            RETURNING id
+            """
+        ),
+        {
+            "name": f"Image Gen - {IMAGE_PROVIDER_ID}",
+            "provider": PROVIDER_NAME,
+            "api_key": api_key,
+            "default_model_name": MODEL_NAME,
+            "is_public": True,
+            "is_auto_mode": False,
+        },
+    )
+    new_provider_id = result.scalar()
+
+    # Create model configuration
+    result = conn.execute(
+        sa.text(
+            """
+            INSERT INTO model_configuration (
+                llm_provider_id, name, is_visible, max_input_tokens,
+                supports_image_input, display_name
+            )
+            VALUES (
+                :llm_provider_id, :name, :is_visible, :max_input_tokens,
+                :supports_image_input, :display_name
+            )
+            RETURNING id
+            """
+        ),
+        {
+            "llm_provider_id": new_provider_id,
+            "name": MODEL_NAME,
+            "is_visible": True,
+            "max_input_tokens": None,
+            "supports_image_input": False,
+            "display_name": None,
+        },
+    )
+    model_config_id = result.scalar()
+
+    # Create image generation config
+    conn.execute(
+        sa.text(
+            """
+            INSERT INTO image_generation_config (
+                image_provider_id, model_configuration_id, is_default
+            )
+            VALUES (
+                :image_provider_id, :model_configuration_id, :is_default
+            )
+            """
+        ),
+        {
+            "image_provider_id": IMAGE_PROVIDER_ID,
+            "model_configuration_id": model_config_id,
+            "is_default": True,
+        },
+    )
+
+
+def downgrade() -> None:
+    # We don't remove the config on downgrade since it's safe to keep around
+    # If we upgrade again, it will be a no-op due to the existing records check
+    pass

backend/alembic/versions/9a0296d7421e_add_is_auto_mode_to_llm_provider.py

@@ -0,0 +1,33 @@
+"""add_is_auto_mode_to_llm_provider
+
+Revision ID: 9a0296d7421e
+Revises: 7206234e012a
+Create Date: 2025-12-17 18:14:29.620981
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "9a0296d7421e"
+down_revision = "7206234e012a"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.add_column(
+        "llm_provider",
+        sa.Column(
+            "is_auto_mode",
+            sa.Boolean(),
+            nullable=False,
+            server_default="false",
+        ),
+    )
+
+
+def downgrade() -> None:
+    op.drop_column("llm_provider", "is_auto_mode")

backend/alembic/versions/9b66d3156fc6_user_file_schema_additions.py

@@ -234,6 +234,8 @@ def downgrade() -> None:
         if "instructions" in columns:
             op.drop_column("user_project", "instructions")
         op.execute("ALTER TABLE user_project RENAME TO user_folder")
+        # Update NULL descriptions to empty string before setting NOT NULL constraint
+        op.execute("UPDATE user_folder SET description = '' WHERE description IS NULL")
         op.alter_column("user_folder", "description", nullable=False)
         logger.info("Renamed user_project back to user_folder")
 

backend/alembic/versions/a01bf2971c5d_update_default_tool_descriptions.py

@@ -0,0 +1,62 @@
+"""update_default_tool_descriptions
+
+Revision ID: a01bf2971c5d
+Revises: 87c52ec39f84
+Create Date: 2025-12-16 15:21:25.656375
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "a01bf2971c5d"
+down_revision = "18b5b2524446"
+branch_labels = None
+depends_on = None
+
+# new tool descriptions (12/2025)
+TOOL_DESCRIPTIONS = {
+    "SearchTool": "The Search Action allows the agent to search through connected knowledge to help build an answer.",
+    "ImageGenerationTool": (
+        "The Image Generation Action allows the agent to use DALL-E 3 or GPT-IMAGE-1 to generate images. "
+        "The action will be used when the user asks the agent to generate an image."
+    ),
+    "WebSearchTool": (
+        "The Web Search Action allows the agent "
+        "to perform internet searches for up-to-date information."
+    ),
+    "KnowledgeGraphTool": (
+        "The Knowledge Graph Search Action allows the agent to search the "
+        "Knowledge Graph for information. This tool can (for now) only be active in the KG Beta Agent, "
+        "and it requires the Knowledge Graph to be enabled."
+    ),
+    "OktaProfileTool": (
+        "The Okta Profile Action allows the agent to fetch the current user's information from Okta. "
+        "This may include the user's name, email, phone number, address, and other details such as their "
+        "manager and direct reports."
+    ),
+}
+
+
+def upgrade() -> None:
+    conn = op.get_bind()
+    conn.execute(sa.text("BEGIN"))
+
+    try:
+        for tool_id, description in TOOL_DESCRIPTIONS.items():
+            conn.execute(
+                sa.text(
+                    "UPDATE tool SET description = :description WHERE in_code_tool_id = :tool_id"
+                ),
+                {"description": description, "tool_id": tool_id},
+            )
+        conn.execute(sa.text("COMMIT"))
+    except Exception as e:
+        conn.execute(sa.text("ROLLBACK"))
+        raise e
+
+
+def downgrade() -> None:
+    pass

backend/alembic/versions/a1b2c3d4e5f6_add_license_table.py

@@ -0,0 +1,49 @@
+"""add license table
+
+Revision ID: a1b2c3d4e5f6
+Revises: a01bf2971c5d
+Create Date: 2025-12-04 10:00:00.000000
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "a1b2c3d4e5f6"
+down_revision = "a01bf2971c5d"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.create_table(
+        "license",
+        sa.Column("id", sa.Integer(), primary_key=True),
+        sa.Column("license_data", sa.Text(), nullable=False),
+        sa.Column(
+            "created_at",
+            sa.DateTime(timezone=True),
+            server_default=sa.func.now(),
+            nullable=False,
+        ),
+        sa.Column(
+            "updated_at",
+            sa.DateTime(timezone=True),
+            server_default=sa.func.now(),
+            nullable=False,
+        ),
+    )
+
+    # Singleton pattern - only ever one row in this table
+    op.create_index(
+        "idx_license_singleton",
+        "license",
+        [sa.text("(true)")],
+        unique=True,
+    )
+
+
+def downgrade() -> None:
+    op.drop_index("idx_license_singleton", table_name="license")
+    op.drop_table("license")

backend/alembic/versions/a2b3c4d5e6f7_remove_fast_default_model_name.py

@@ -0,0 +1,27 @@
+"""Remove fast_default_model_name from llm_provider
+
+Revision ID: a2b3c4d5e6f7
+Revises: 2a391f840e85
+Create Date: 2024-12-17
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "a2b3c4d5e6f7"
+down_revision = "2a391f840e85"
+branch_labels: None = None
+depends_on: None = None
+
+
+def upgrade() -> None:
+    op.drop_column("llm_provider", "fast_default_model_name")
+
+
+def downgrade() -> None:
+    op.add_column(
+        "llm_provider",
+        sa.Column("fast_default_model_name", sa.String(), nullable=True),
+    )

backend/alembic/versions/a3c1a7904cd0_remove_userfile_related_deprecated_.py

@@ -0,0 +1,39 @@
+"""remove userfile related deprecated fields
+
+Revision ID: a3c1a7904cd0
+Revises: 5c3dca366b35
+Create Date: 2026-01-06 13:00:30.634396
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "a3c1a7904cd0"
+down_revision = "5c3dca366b35"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.drop_column("user_file", "document_id")
+    op.drop_column("user_file", "document_id_migrated")
+    op.drop_column("connector_credential_pair", "is_user_file")
+
+
+def downgrade() -> None:
+    op.add_column(
+        "connector_credential_pair",
+        sa.Column("is_user_file", sa.Boolean(), nullable=False, server_default="false"),
+    )
+    op.add_column(
+        "user_file",
+        sa.Column("document_id", sa.String(), nullable=True),
+    )
+    op.add_column(
+        "user_file",
+        sa.Column(
+            "document_id_migrated", sa.Boolean(), nullable=False, server_default="true"
+        ),
+    )

backend/alembic/versions/a852cbe15577_new_chat_history.py

@@ -0,0 +1,425 @@
+"""New Chat History
+
+Revision ID: a852cbe15577
+Revises: 6436661d5b65
+Create Date: 2025-11-08 15:16:37.781308
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from sqlalchemy.dialects import postgresql
+
+# revision identifiers, used by Alembic.
+revision = "a852cbe15577"
+down_revision = "6436661d5b65"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # 1. Drop old research/agent tables (CASCADE handles dependencies)
+    op.execute("DROP TABLE IF EXISTS research_agent_iteration_sub_step CASCADE")
+    op.execute("DROP TABLE IF EXISTS research_agent_iteration CASCADE")
+    op.execute("DROP TABLE IF EXISTS agent__sub_query__search_doc CASCADE")
+    op.execute("DROP TABLE IF EXISTS agent__sub_query CASCADE")
+    op.execute("DROP TABLE IF EXISTS agent__sub_question CASCADE")
+
+    # 2. ChatMessage table changes
+    # Rename columns and add FKs
+    op.alter_column(
+        "chat_message", "parent_message", new_column_name="parent_message_id"
+    )
+    op.create_foreign_key(
+        "fk_chat_message_parent_message_id",
+        "chat_message",
+        "chat_message",
+        ["parent_message_id"],
+        ["id"],
+    )
+    op.alter_column(
+        "chat_message",
+        "latest_child_message",
+        new_column_name="latest_child_message_id",
+    )
+    op.create_foreign_key(
+        "fk_chat_message_latest_child_message_id",
+        "chat_message",
+        "chat_message",
+        ["latest_child_message_id"],
+        ["id"],
+    )
+
+    # Add new column
+    op.add_column(
+        "chat_message", sa.Column("reasoning_tokens", sa.Text(), nullable=True)
+    )
+
+    # Drop old columns
+    op.drop_column("chat_message", "rephrased_query")
+    op.drop_column("chat_message", "alternate_assistant_id")
+    op.drop_column("chat_message", "overridden_model")
+    op.drop_column("chat_message", "is_agentic")
+    op.drop_column("chat_message", "refined_answer_improvement")
+    op.drop_column("chat_message", "research_type")
+    op.drop_column("chat_message", "research_plan")
+    op.drop_column("chat_message", "research_answer_purpose")
+
+    # 3. ToolCall table changes
+    # Drop the unique constraint first
+    op.drop_constraint("uq_tool_call_message_id", "tool_call", type_="unique")
+
+    # Delete orphaned tool_call rows (those without valid chat_message)
+    op.execute(
+        "DELETE FROM tool_call WHERE message_id NOT IN (SELECT id FROM chat_message)"
+    )
+
+    # Add chat_session_id as nullable first, populate, then make NOT NULL
+    op.add_column(
+        "tool_call",
+        sa.Column("chat_session_id", postgresql.UUID(as_uuid=True), nullable=True),
+    )
+
+    # Populate chat_session_id from the related chat_message
+    op.execute(
+        """
+        UPDATE tool_call
+        SET chat_session_id = chat_message.chat_session_id
+        FROM chat_message
+        WHERE tool_call.message_id = chat_message.id
+    """
+    )
+
+    # Now make it NOT NULL and add FK
+    op.alter_column("tool_call", "chat_session_id", nullable=False)
+    op.create_foreign_key(
+        "fk_tool_call_chat_session_id",
+        "tool_call",
+        "chat_session",
+        ["chat_session_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    # Rename message_id and make nullable, recreate FK with CASCADE
+    op.drop_constraint("tool_call_message_id_fkey", "tool_call", type_="foreignkey")
+    op.alter_column(
+        "tool_call",
+        "message_id",
+        new_column_name="parent_chat_message_id",
+        nullable=True,
+    )
+    op.create_foreign_key(
+        "fk_tool_call_parent_chat_message_id",
+        "tool_call",
+        "chat_message",
+        ["parent_chat_message_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    # Add parent_tool_call_id with FK
+    op.add_column(
+        "tool_call", sa.Column("parent_tool_call_id", sa.Integer(), nullable=True)
+    )
+    op.create_foreign_key(
+        "fk_tool_call_parent_tool_call_id",
+        "tool_call",
+        "tool_call",
+        ["parent_tool_call_id"],
+        ["id"],
+        ondelete="CASCADE",
+    )
+
+    # Add other new columns
+    op.add_column(
+        "tool_call",
+        sa.Column("turn_number", sa.Integer(), nullable=False, server_default="0"),
+    )
+    op.add_column(
+        "tool_call",
+        sa.Column("tool_call_id", sa.String(), nullable=False, server_default=""),
+    )
+    op.add_column("tool_call", sa.Column("reasoning_tokens", sa.Text(), nullable=True))
+    op.add_column(
+        "tool_call",
+        sa.Column("tool_call_tokens", sa.Integer(), nullable=False, server_default="0"),
+    )
+    op.add_column(
+        "tool_call",
+        sa.Column("generated_images", postgresql.JSONB(), nullable=True),
+    )
+
+    # Rename columns
+    op.alter_column(
+        "tool_call", "tool_arguments", new_column_name="tool_call_arguments"
+    )
+    op.alter_column("tool_call", "tool_result", new_column_name="tool_call_response")
+
+    # Change tool_call_response type from JSONB to Text
+    op.execute(
+        """
+        ALTER TABLE tool_call
+        ALTER COLUMN tool_call_response TYPE TEXT
+        USING tool_call_response::text
+    """
+    )
+
+    # Drop old columns
+    op.drop_column("tool_call", "tool_name")
+
+    # 4. Create new association table
+    op.create_table(
+        "tool_call__search_doc",
+        sa.Column("tool_call_id", sa.Integer(), nullable=False),
+        sa.Column("search_doc_id", sa.Integer(), nullable=False),
+        sa.ForeignKeyConstraint(["tool_call_id"], ["tool_call.id"], ondelete="CASCADE"),
+        sa.ForeignKeyConstraint(
+            ["search_doc_id"], ["search_doc.id"], ondelete="CASCADE"
+        ),
+        sa.PrimaryKeyConstraint("tool_call_id", "search_doc_id"),
+    )
+
+    # 5. Persona table change
+    op.add_column(
+        "persona",
+        sa.Column(
+            "replace_base_system_prompt",
+            sa.Boolean(),
+            nullable=False,
+            server_default="false",
+        ),
+    )
+
+
+def downgrade() -> None:
+    # Reverse persona changes
+    op.drop_column("persona", "replace_base_system_prompt")
+
+    # Drop new association table
+    op.drop_table("tool_call__search_doc")
+
+    # Reverse ToolCall changes
+    op.add_column(
+        "tool_call",
+        sa.Column("tool_name", sa.String(), nullable=False, server_default=""),
+    )
+
+    # Change tool_call_response back to JSONB
+    op.execute(
+        """
+        ALTER TABLE tool_call
+        ALTER COLUMN tool_call_response TYPE JSONB
+        USING tool_call_response::jsonb
+    """
+    )
+
+    op.alter_column("tool_call", "tool_call_response", new_column_name="tool_result")
+    op.alter_column(
+        "tool_call", "tool_call_arguments", new_column_name="tool_arguments"
+    )
+
+    op.drop_column("tool_call", "generated_images")
+    op.drop_column("tool_call", "tool_call_tokens")
+    op.drop_column("tool_call", "reasoning_tokens")
+    op.drop_column("tool_call", "tool_call_id")
+    op.drop_column("tool_call", "turn_number")
+
+    op.drop_constraint(
+        "fk_tool_call_parent_tool_call_id", "tool_call", type_="foreignkey"
+    )
+    op.drop_column("tool_call", "parent_tool_call_id")
+
+    op.drop_constraint(
+        "fk_tool_call_parent_chat_message_id", "tool_call", type_="foreignkey"
+    )
+    op.alter_column(
+        "tool_call",
+        "parent_chat_message_id",
+        new_column_name="message_id",
+        nullable=False,
+    )
+    op.create_foreign_key(
+        "tool_call_message_id_fkey",
+        "tool_call",
+        "chat_message",
+        ["message_id"],
+        ["id"],
+    )
+
+    op.drop_constraint("fk_tool_call_chat_session_id", "tool_call", type_="foreignkey")
+    op.drop_column("tool_call", "chat_session_id")
+
+    op.create_unique_constraint("uq_tool_call_message_id", "tool_call", ["message_id"])
+
+    # Reverse ChatMessage changes
+    # Note: research_answer_purpose and research_type were originally String columns,
+    # not Enum types (see migrations 5ae8240accb3 and f8a9b2c3d4e5)
+    op.add_column(
+        "chat_message",
+        sa.Column("research_answer_purpose", sa.String(), nullable=True),
+    )
+    op.add_column(
+        "chat_message", sa.Column("research_plan", postgresql.JSONB(), nullable=True)
+    )
+    op.add_column(
+        "chat_message",
+        sa.Column("research_type", sa.String(), nullable=True),
+    )
+    op.add_column(
+        "chat_message",
+        sa.Column("refined_answer_improvement", sa.Boolean(), nullable=True),
+    )
+    op.add_column(
+        "chat_message",
+        sa.Column("is_agentic", sa.Boolean(), nullable=False, server_default="false"),
+    )
+    op.add_column(
+        "chat_message", sa.Column("overridden_model", sa.String(), nullable=True)
+    )
+    op.add_column(
+        "chat_message", sa.Column("alternate_assistant_id", sa.Integer(), nullable=True)
+    )
+    # Recreate the FK constraint that was implicitly dropped when the column was dropped
+    op.create_foreign_key(
+        "fk_chat_message_persona",
+        "chat_message",
+        "persona",
+        ["alternate_assistant_id"],
+        ["id"],
+    )
+    op.add_column(
+        "chat_message", sa.Column("rephrased_query", sa.Text(), nullable=True)
+    )
+
+    op.drop_column("chat_message", "reasoning_tokens")
+
+    op.drop_constraint(
+        "fk_chat_message_latest_child_message_id", "chat_message", type_="foreignkey"
+    )
+    op.alter_column(
+        "chat_message",
+        "latest_child_message_id",
+        new_column_name="latest_child_message",
+    )
+
+    op.drop_constraint(
+        "fk_chat_message_parent_message_id", "chat_message", type_="foreignkey"
+    )
+    op.alter_column(
+        "chat_message", "parent_message_id", new_column_name="parent_message"
+    )
+
+    # Recreate agent sub question and sub query tables
+    op.create_table(
+        "agent__sub_question",
+        sa.Column("id", sa.Integer(), primary_key=True),
+        sa.Column("primary_question_id", sa.Integer(), nullable=False),
+        sa.Column("chat_session_id", postgresql.UUID(as_uuid=True), nullable=False),
+        sa.Column("sub_question", sa.Text(), nullable=False),
+        sa.Column("level", sa.Integer(), nullable=False),
+        sa.Column("level_question_num", sa.Integer(), nullable=False),
+        sa.Column(
+            "time_created",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.Column("sub_answer", sa.Text(), nullable=False),
+        sa.Column("sub_question_doc_results", postgresql.JSONB(), nullable=False),
+        sa.ForeignKeyConstraint(
+            ["primary_question_id"], ["chat_message.id"], ondelete="CASCADE"
+        ),
+        sa.ForeignKeyConstraint(["chat_session_id"], ["chat_session.id"]),
+        sa.PrimaryKeyConstraint("id"),
+    )
+
+    op.create_table(
+        "agent__sub_query",
+        sa.Column("id", sa.Integer(), primary_key=True),
+        sa.Column("parent_question_id", sa.Integer(), nullable=False),
+        sa.Column("chat_session_id", postgresql.UUID(as_uuid=True), nullable=False),
+        sa.Column("sub_query", sa.Text(), nullable=False),
+        sa.Column(
+            "time_created",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.ForeignKeyConstraint(
+            ["parent_question_id"], ["agent__sub_question.id"], ondelete="CASCADE"
+        ),
+        sa.ForeignKeyConstraint(["chat_session_id"], ["chat_session.id"]),
+        sa.PrimaryKeyConstraint("id"),
+    )
+
+    op.create_table(
+        "agent__sub_query__search_doc",
+        sa.Column("sub_query_id", sa.Integer(), nullable=False),
+        sa.Column("search_doc_id", sa.Integer(), nullable=False),
+        sa.ForeignKeyConstraint(
+            ["sub_query_id"], ["agent__sub_query.id"], ondelete="CASCADE"
+        ),
+        sa.ForeignKeyConstraint(["search_doc_id"], ["search_doc.id"]),
+        sa.PrimaryKeyConstraint("sub_query_id", "search_doc_id"),
+    )
+
+    # Recreate research agent tables
+    op.create_table(
+        "research_agent_iteration",
+        sa.Column("id", sa.Integer(), autoincrement=True, nullable=False),
+        sa.Column("primary_question_id", sa.Integer(), nullable=False),
+        sa.Column("iteration_nr", sa.Integer(), nullable=False),
+        sa.Column(
+            "created_at",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.Column("purpose", sa.String(), nullable=True),
+        sa.Column("reasoning", sa.String(), nullable=True),
+        sa.ForeignKeyConstraint(
+            ["primary_question_id"], ["chat_message.id"], ondelete="CASCADE"
+        ),
+        sa.PrimaryKeyConstraint("id"),
+        sa.UniqueConstraint(
+            "primary_question_id",
+            "iteration_nr",
+            name="_research_agent_iteration_unique_constraint",
+        ),
+    )
+
+    op.create_table(
+        "research_agent_iteration_sub_step",
+        sa.Column("id", sa.Integer(), autoincrement=True, nullable=False),
+        sa.Column("primary_question_id", sa.Integer(), nullable=False),
+        sa.Column("iteration_nr", sa.Integer(), nullable=False),
+        sa.Column("iteration_sub_step_nr", sa.Integer(), nullable=False),
+        sa.Column(
+            "created_at",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.Column("sub_step_instructions", sa.String(), nullable=True),
+        sa.Column("sub_step_tool_id", sa.Integer(), nullable=True),
+        sa.Column("reasoning", sa.String(), nullable=True),
+        sa.Column("sub_answer", sa.String(), nullable=True),
+        sa.Column("cited_doc_results", postgresql.JSONB(), nullable=False),
+        sa.Column("claims", postgresql.JSONB(), nullable=True),
+        sa.Column("is_web_fetch", sa.Boolean(), nullable=True),
+        sa.Column("queries", postgresql.JSONB(), nullable=True),
+        sa.Column("generated_images", postgresql.JSONB(), nullable=True),
+        sa.Column("additional_data", postgresql.JSONB(), nullable=True),
+        sa.Column("file_ids", postgresql.JSONB(), nullable=True),
+        sa.ForeignKeyConstraint(
+            ["primary_question_id", "iteration_nr"],
+            [
+                "research_agent_iteration.primary_question_id",
+                "research_agent_iteration.iteration_nr",
+            ],
+            ondelete="CASCADE",
+        ),
+        sa.ForeignKeyConstraint(["sub_step_tool_id"], ["tool.id"], ondelete="SET NULL"),
+        sa.PrimaryKeyConstraint("id"),
+    )

backend/alembic/versions/b8c9d0e1f2a3_drop_milestone_table.py

@@ -0,0 +1,46 @@
+"""Drop milestone table
+
+Revision ID: b8c9d0e1f2a3
+Revises: a2b3c4d5e6f7
+Create Date: 2025-12-18
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+import fastapi_users_db_sqlalchemy
+from sqlalchemy.dialects import postgresql
+
+# revision identifiers, used by Alembic.
+revision = "b8c9d0e1f2a3"
+down_revision = "a2b3c4d5e6f7"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.drop_table("milestone")
+
+
+def downgrade() -> None:
+    op.create_table(
+        "milestone",
+        sa.Column("id", sa.UUID(), nullable=False),
+        sa.Column("tenant_id", sa.String(), nullable=True),
+        sa.Column(
+            "user_id",
+            fastapi_users_db_sqlalchemy.generics.GUID(),
+            nullable=True,
+        ),
+        sa.Column("event_type", sa.String(), nullable=False),
+        sa.Column(
+            "time_created",
+            sa.DateTime(timezone=True),
+            server_default=sa.text("now()"),
+            nullable=False,
+        ),
+        sa.Column("event_tracker", postgresql.JSONB(), nullable=True),
+        sa.ForeignKeyConstraint(["user_id"], ["user.id"], ondelete="CASCADE"),
+        sa.PrimaryKeyConstraint("id"),
+        sa.UniqueConstraint("event_type", name="uq_milestone_event_type"),
+    )

backend/alembic/versions/c1d2e3f4a5b6_add_deep_research_tool.py

@@ -0,0 +1,52 @@
+"""add_deep_research_tool
+
+Revision ID: c1d2e3f4a5b6
+Revises: b8c9d0e1f2a3
+Create Date: 2025-12-18 16:00:00.000000
+
+"""
+
+from alembic import op
+from onyx.deep_research.dr_mock_tools import RESEARCH_AGENT_DB_NAME
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "c1d2e3f4a5b6"
+down_revision = "b8c9d0e1f2a3"
+branch_labels = None
+depends_on = None
+
+
+DEEP_RESEARCH_TOOL = {
+    "name": RESEARCH_AGENT_DB_NAME,
+    "display_name": "Research Agent",
+    "description": "The Research Agent is a sub-agent that conducts research on a specific topic.",
+    "in_code_tool_id": "ResearchAgent",
+}
+
+
+def upgrade() -> None:
+    conn = op.get_bind()
+    conn.execute(
+        sa.text(
+            """
+            INSERT INTO tool (name, display_name, description, in_code_tool_id, enabled)
+            VALUES (:name, :display_name, :description, :in_code_tool_id, false)
+            """
+        ),
+        DEEP_RESEARCH_TOOL,
+    )
+
+
+def downgrade() -> None:
+    conn = op.get_bind()
+    conn.execute(
+        sa.text(
+            """
+            DELETE FROM tool
+            WHERE in_code_tool_id = :in_code_tool_id
+            """
+        ),
+        {"in_code_tool_id": DEEP_RESEARCH_TOOL["in_code_tool_id"]},
+    )

backend/alembic/versions/c9e2cd766c29_add_s3_file_store_table.py

@@ -257,8 +257,8 @@ def _migrate_files_to_external_storage() -> None:
             print(f"File {file_id} not found in PostgreSQL storage.")
             continue
 
-        lobj_id = cast(int, file_record.lobj_oid)  # type: ignore
-        file_metadata = cast(Any, file_record.file_metadata)  # type: ignore
+        lobj_id = cast(int, file_record.lobj_oid)
+        file_metadata = cast(Any, file_record.file_metadata)
 
         # Read file content from PostgreSQL
         try:
@@ -280,7 +280,7 @@ def _migrate_files_to_external_storage() -> None:
             else:
                 # Convert other types to dict if possible, otherwise None
                 try:
-                    file_metadata = dict(file_record.file_metadata)  # type: ignore
+                    file_metadata = dict(file_record.file_metadata)
                 except (TypeError, ValueError):
                     file_metadata = None
 

backend/alembic/versions/e209dc5a8156_added_prune_frequency.py

@@ -11,8 +11,8 @@ import sqlalchemy as sa
 
 revision = "e209dc5a8156"
 down_revision = "48d14957fe80"
-branch_labels = None  # type: ignore
-depends_on = None  # type: ignore
+branch_labels = None
+depends_on = None
 
 
 def upgrade() -> None:

backend/alembic/versions/e8f0d2a38171_add_status_to_mcp_server_and_make_auth_.py

@@ -0,0 +1,115 @@
+"""add status to mcp server and make auth fields nullable
+
+Revision ID: e8f0d2a38171
+Revises: ed9e44312505
+Create Date: 2025-11-28 11:15:37.667340
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+from onyx.db.enums import (
+    MCPTransport,
+    MCPAuthenticationType,
+    MCPAuthenticationPerformer,
+    MCPServerStatus,
+)
+
+# revision identifiers, used by Alembic.
+revision = "e8f0d2a38171"
+down_revision = "ed9e44312505"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # Make auth fields nullable
+    op.alter_column(
+        "mcp_server",
+        "transport",
+        existing_type=sa.Enum(MCPTransport, name="mcp_transport", native_enum=False),
+        nullable=True,
+    )
+
+    op.alter_column(
+        "mcp_server",
+        "auth_type",
+        existing_type=sa.Enum(
+            MCPAuthenticationType, name="mcp_authentication_type", native_enum=False
+        ),
+        nullable=True,
+    )
+
+    op.alter_column(
+        "mcp_server",
+        "auth_performer",
+        existing_type=sa.Enum(
+            MCPAuthenticationPerformer,
+            name="mcp_authentication_performer",
+            native_enum=False,
+        ),
+        nullable=True,
+    )
+
+    # Add status column with default
+    op.add_column(
+        "mcp_server",
+        sa.Column(
+            "status",
+            sa.Enum(MCPServerStatus, name="mcp_server_status", native_enum=False),
+            nullable=False,
+            server_default="CREATED",
+        ),
+    )
+
+    # For existing records, mark status as CONNECTED
+    bind = op.get_bind()
+    bind.execute(
+        sa.text(
+            """
+        UPDATE mcp_server
+        SET status = 'CONNECTED'
+        WHERE status != 'CONNECTED'
+        and admin_connection_config_id IS NOT NULL
+        """
+        )
+    )
+
+
+def downgrade() -> None:
+    # Remove status column
+    op.drop_column("mcp_server", "status")
+
+    # Make auth fields non-nullable (set defaults first)
+    op.execute(
+        "UPDATE mcp_server SET transport = 'STREAMABLE_HTTP' WHERE transport IS NULL"
+    )
+    op.execute("UPDATE mcp_server SET auth_type = 'NONE' WHERE auth_type IS NULL")
+    op.execute(
+        "UPDATE mcp_server SET auth_performer = 'ADMIN' WHERE auth_performer IS NULL"
+    )
+
+    op.alter_column(
+        "mcp_server",
+        "transport",
+        existing_type=sa.Enum(MCPTransport, name="mcp_transport", native_enum=False),
+        nullable=False,
+    )
+    op.alter_column(
+        "mcp_server",
+        "auth_type",
+        existing_type=sa.Enum(
+            MCPAuthenticationType, name="mcp_authentication_type", native_enum=False
+        ),
+        nullable=False,
+    )
+    op.alter_column(
+        "mcp_server",
+        "auth_performer",
+        existing_type=sa.Enum(
+            MCPAuthenticationPerformer,
+            name="mcp_authentication_performer",
+            native_enum=False,
+        ),
+        nullable=False,
+    )

backend/alembic/versions/ed9e44312505_add_icon_name_field.py

@@ -0,0 +1,34 @@
+"""Add icon_name field
+
+Revision ID: ed9e44312505
+Revises: 5e6f7a8b9c0d
+Create Date: 2025-12-03 16:35:07.828393
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+# revision identifiers, used by Alembic.
+revision = "ed9e44312505"
+down_revision = "5e6f7a8b9c0d"
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    # Add icon_name column
+    op.add_column("persona", sa.Column("icon_name", sa.String(), nullable=True))
+
+    # Remove old icon columns
+    op.drop_column("persona", "icon_shape")
+    op.drop_column("persona", "icon_color")
+
+
+def downgrade() -> None:
+    # Re-add old icon columns
+    op.add_column("persona", sa.Column("icon_color", sa.String(), nullable=True))
+    op.add_column("persona", sa.Column("icon_shape", sa.Integer(), nullable=True))
+
+    # Remove icon_name column
+    op.drop_column("persona", "icon_name")

backend/alembic_tenants/env.py

@@ -20,7 +20,9 @@ config = context.config
 if config.config_file_name is not None and config.attributes.get(
     "configure_logger", True
 ):
-    fileConfig(config.config_file_name)
+    # disable_existing_loggers=False prevents breaking pytest's caplog fixture
+    # See: https://pytest-alembic.readthedocs.io/en/latest/setup.html#caplog-issues
+    fileConfig(config.config_file_name, disable_existing_loggers=False)
 
 # add your model's MetaData object here
 # for 'autogenerate' support
@@ -82,9 +84,9 @@ def run_migrations_offline() -> None:
 def do_run_migrations(connection: Connection) -> None:
     context.configure(
         connection=connection,
-        target_metadata=target_metadata,  # type: ignore
+        target_metadata=target_metadata,  # type: ignore[arg-type]
         include_object=include_object,
-    )  # type: ignore
+    )
 
     with context.begin_transaction():
         context.run_migrations()
@@ -108,9 +110,24 @@ async def run_async_migrations() -> None:
 
 
 def run_migrations_online() -> None:
-    """Run migrations in 'online' mode."""
+    """Run migrations in 'online' mode.
 
-    asyncio.run(run_async_migrations())
+    Supports pytest-alembic by checking for a pre-configured connection
+    in context.config.attributes["connection"]. If present, uses that
+    connection/engine directly instead of creating a new async engine.
+    """
+    # Check if pytest-alembic is providing a connection/engine
+    connectable = context.config.attributes.get("connection", None)
+
+    if connectable is not None:
+        # pytest-alembic is providing an engine - use it directly
+        with connectable.connect() as connection:
+            do_run_migrations(connection)
+            # Commit to ensure changes are visible to next migration
+            connection.commit()
+    else:
+        # Normal operation - use async migrations
+        asyncio.run(run_async_migrations())
 
 
 if context.is_offline_mode():

backend/ee/onyx/configs/app_configs.py

@@ -41,6 +41,10 @@ CONFLUENCE_ANONYMOUS_ACCESS_IS_PUBLIC = (
 JIRA_PERMISSION_DOC_SYNC_FREQUENCY = int(
     os.environ.get("JIRA_PERMISSION_DOC_SYNC_FREQUENCY") or 30 * 60
 )
+# In seconds, default is 30 minutes
+JIRA_PERMISSION_GROUP_SYNC_FREQUENCY = int(
+    os.environ.get("JIRA_PERMISSION_GROUP_SYNC_FREQUENCY") or 30 * 60
+)
 
 
 #####
@@ -107,10 +111,6 @@ CHECK_TTL_MANAGEMENT_TASK_FREQUENCY_IN_HOURS = float(
 STRIPE_SECRET_KEY = os.environ.get("STRIPE_SECRET_KEY")
 STRIPE_PRICE_ID = os.environ.get("STRIPE_PRICE")
 
-OPENAI_DEFAULT_API_KEY = os.environ.get("OPENAI_DEFAULT_API_KEY")
-ANTHROPIC_DEFAULT_API_KEY = os.environ.get("ANTHROPIC_DEFAULT_API_KEY")
-COHERE_DEFAULT_API_KEY = os.environ.get("COHERE_DEFAULT_API_KEY")
-
 # JWT Public Key URL
 JWT_PUBLIC_KEY_URL: str | None = os.getenv("JWT_PUBLIC_KEY_URL", None)
 

backend/ee/onyx/db/analytics.py

@@ -199,10 +199,7 @@ def fetch_persona_message_analytics(
             ChatMessage.chat_session_id == ChatSession.id,
         )
         .where(
-            or_(
-                ChatMessage.alternate_assistant_id == persona_id,
-                ChatSession.persona_id == persona_id,
-            ),
+            ChatSession.persona_id == persona_id,
             ChatMessage.time_sent >= start,
             ChatMessage.time_sent <= end,
             ChatMessage.message_type == MessageType.ASSISTANT,
@@ -231,10 +228,7 @@ def fetch_persona_unique_users(
             ChatMessage.chat_session_id == ChatSession.id,
         )
         .where(
-            or_(
-                ChatMessage.alternate_assistant_id == persona_id,
-                ChatSession.persona_id == persona_id,
-            ),
+            ChatSession.persona_id == persona_id,
             ChatMessage.time_sent >= start,
             ChatMessage.time_sent <= end,
             ChatMessage.message_type == MessageType.ASSISTANT,
@@ -265,10 +259,7 @@ def fetch_assistant_message_analytics(
             ChatMessage.chat_session_id == ChatSession.id,
         )
         .where(
-            or_(
-                ChatMessage.alternate_assistant_id == assistant_id,
-                ChatSession.persona_id == assistant_id,
-            ),
+            ChatSession.persona_id == assistant_id,
             ChatMessage.time_sent >= start,
             ChatMessage.time_sent <= end,
             ChatMessage.message_type == MessageType.ASSISTANT,
@@ -299,10 +290,7 @@ def fetch_assistant_unique_users(
             ChatMessage.chat_session_id == ChatSession.id,
         )
         .where(
-            or_(
-                ChatMessage.alternate_assistant_id == assistant_id,
-                ChatSession.persona_id == assistant_id,
-            ),
+            ChatSession.persona_id == assistant_id,
             ChatMessage.time_sent >= start,
             ChatMessage.time_sent <= end,
             ChatMessage.message_type == MessageType.ASSISTANT,
@@ -332,10 +320,7 @@ def fetch_assistant_unique_users_total(
             ChatMessage.chat_session_id == ChatSession.id,
         )
         .where(
-            or_(
-                ChatMessage.alternate_assistant_id == assistant_id,
-                ChatSession.persona_id == assistant_id,
-            ),
+            ChatSession.persona_id == assistant_id,
             ChatMessage.time_sent >= start,
             ChatMessage.time_sent <= end,
             ChatMessage.message_type == MessageType.ASSISTANT,

backend/ee/onyx/db/document_set.py

@@ -118,6 +118,6 @@ def fetch_document_sets(
             .all()
         )
 
-        document_set_with_cc_pairs.append((document_set, cc_pairs))  # type: ignore
+        document_set_with_cc_pairs.append((document_set, cc_pairs))
 
     return document_set_with_cc_pairs

backend/ee/onyx/db/license.py

@@ -0,0 +1,278 @@
+"""Database and cache operations for the license table."""
+
+from datetime import datetime
+
+from sqlalchemy import func
+from sqlalchemy import select
+from sqlalchemy.orm import Session
+
+from ee.onyx.server.license.models import LicenseMetadata
+from ee.onyx.server.license.models import LicensePayload
+from ee.onyx.server.license.models import LicenseSource
+from onyx.db.models import License
+from onyx.db.models import User
+from onyx.redis.redis_pool import get_redis_client
+from onyx.redis.redis_pool import get_redis_replica_client
+from onyx.utils.logger import setup_logger
+from shared_configs.configs import MULTI_TENANT
+from shared_configs.contextvars import get_current_tenant_id
+
+logger = setup_logger()
+
+LICENSE_METADATA_KEY = "license:metadata"
+LICENSE_CACHE_TTL_SECONDS = 86400  # 24 hours
+
+
+# -----------------------------------------------------------------------------
+# Database CRUD Operations
+# -----------------------------------------------------------------------------
+
+
+def get_license(db_session: Session) -> License | None:
+    """
+    Get the current license (singleton pattern - only one row).
+
+    Args:
+        db_session: Database session
+
+    Returns:
+        License object if exists, None otherwise
+    """
+    return db_session.execute(select(License)).scalars().first()
+
+
+def upsert_license(db_session: Session, license_data: str) -> License:
+    """
+    Insert or update the license (singleton pattern).
+
+    Args:
+        db_session: Database session
+        license_data: Base64-encoded signed license blob
+
+    Returns:
+        The created or updated License object
+    """
+    existing = get_license(db_session)
+
+    if existing:
+        existing.license_data = license_data
+        db_session.commit()
+        db_session.refresh(existing)
+        logger.info("License updated")
+        return existing
+
+    new_license = License(license_data=license_data)
+    db_session.add(new_license)
+    db_session.commit()
+    db_session.refresh(new_license)
+    logger.info("License created")
+    return new_license
+
+
+def delete_license(db_session: Session) -> bool:
+    """
+    Delete the current license.
+
+    Args:
+        db_session: Database session
+
+    Returns:
+        True if deleted, False if no license existed
+    """
+    existing = get_license(db_session)
+    if existing:
+        db_session.delete(existing)
+        db_session.commit()
+        logger.info("License deleted")
+        return True
+    return False
+
+
+# -----------------------------------------------------------------------------
+# Seat Counting
+# -----------------------------------------------------------------------------
+
+
+def get_used_seats(tenant_id: str | None = None) -> int:
+    """
+    Get current seat usage.
+
+    For multi-tenant: counts users in UserTenantMapping for this tenant.
+    For self-hosted: counts all active users (includes both Onyx UI users
+    and Slack users who have been converted to Onyx users).
+    """
+    if MULTI_TENANT:
+        from ee.onyx.server.tenants.user_mapping import get_tenant_count
+
+        return get_tenant_count(tenant_id or get_current_tenant_id())
+    else:
+        # Self-hosted: count all active users (Onyx + converted Slack users)
+        from onyx.db.engine.sql_engine import get_session_with_current_tenant
+
+        with get_session_with_current_tenant() as db_session:
+            result = db_session.execute(
+                select(func.count()).select_from(User).where(User.is_active)  # type: ignore
+            )
+            return result.scalar() or 0
+
+
+# -----------------------------------------------------------------------------
+# Redis Cache Operations
+# -----------------------------------------------------------------------------
+
+
+def get_cached_license_metadata(tenant_id: str | None = None) -> LicenseMetadata | None:
+    """
+    Get license metadata from Redis cache.
+
+    Args:
+        tenant_id: Tenant ID (for multi-tenant deployments)
+
+    Returns:
+        LicenseMetadata if cached, None otherwise
+    """
+    tenant = tenant_id or get_current_tenant_id()
+    redis_client = get_redis_replica_client(tenant_id=tenant)
+
+    cached = redis_client.get(LICENSE_METADATA_KEY)
+    if cached:
+        try:
+            cached_str: str
+            if isinstance(cached, bytes):
+                cached_str = cached.decode("utf-8")
+            else:
+                cached_str = str(cached)
+            return LicenseMetadata.model_validate_json(cached_str)
+        except Exception as e:
+            logger.warning(f"Failed to parse cached license metadata: {e}")
+            return None
+    return None
+
+
+def invalidate_license_cache(tenant_id: str | None = None) -> None:
+    """
+    Invalidate the license metadata cache (not the license itself).
+
+    This deletes the cached LicenseMetadata from Redis. The actual license
+    in the database is not affected. Redis delete is idempotent - if the
+    key doesn't exist, this is a no-op.
+
+    Args:
+        tenant_id: Tenant ID (for multi-tenant deployments)
+    """
+    tenant = tenant_id or get_current_tenant_id()
+    redis_client = get_redis_client(tenant_id=tenant)
+    redis_client.delete(LICENSE_METADATA_KEY)
+    logger.info("License cache invalidated")
+
+
+def update_license_cache(
+    payload: LicensePayload,
+    source: LicenseSource | None = None,
+    grace_period_end: datetime | None = None,
+    tenant_id: str | None = None,
+) -> LicenseMetadata:
+    """
+    Update the Redis cache with license metadata.
+
+    We cache all license statuses (ACTIVE, GRACE_PERIOD, GATED_ACCESS) because:
+    1. Frontend needs status to show appropriate UI/banners
+    2. Caching avoids repeated DB + crypto verification on every request
+    3. Status enforcement happens at the feature level, not here
+
+    Args:
+        payload: Verified license payload
+        source: How the license was obtained
+        grace_period_end: Optional grace period end time
+        tenant_id: Tenant ID (for multi-tenant deployments)
+
+    Returns:
+        The cached LicenseMetadata
+    """
+    from ee.onyx.utils.license import get_license_status
+
+    tenant = tenant_id or get_current_tenant_id()
+    redis_client = get_redis_client(tenant_id=tenant)
+
+    used_seats = get_used_seats(tenant)
+    status = get_license_status(payload, grace_period_end)
+
+    metadata = LicenseMetadata(
+        tenant_id=payload.tenant_id,
+        organization_name=payload.organization_name,
+        seats=payload.seats,
+        used_seats=used_seats,
+        plan_type=payload.plan_type,
+        issued_at=payload.issued_at,
+        expires_at=payload.expires_at,
+        grace_period_end=grace_period_end,
+        status=status,
+        source=source,
+        stripe_subscription_id=payload.stripe_subscription_id,
+    )
+
+    redis_client.setex(
+        LICENSE_METADATA_KEY,
+        LICENSE_CACHE_TTL_SECONDS,
+        metadata.model_dump_json(),
+    )
+
+    logger.info(f"License cache updated: {metadata.seats} seats, status={status.value}")
+    return metadata
+
+
+def refresh_license_cache(
+    db_session: Session,
+    tenant_id: str | None = None,
+) -> LicenseMetadata | None:
+    """
+    Refresh the license cache from the database.
+
+    Args:
+        db_session: Database session
+        tenant_id: Tenant ID (for multi-tenant deployments)
+
+    Returns:
+        LicenseMetadata if license exists, None otherwise
+    """
+    from ee.onyx.utils.license import verify_license_signature
+
+    license_record = get_license(db_session)
+    if not license_record:
+        invalidate_license_cache(tenant_id)
+        return None
+
+    try:
+        payload = verify_license_signature(license_record.license_data)
+        return update_license_cache(
+            payload,
+            source=LicenseSource.AUTO_FETCH,
+            tenant_id=tenant_id,
+        )
+    except ValueError as e:
+        logger.error(f"Failed to verify license during cache refresh: {e}")
+        invalidate_license_cache(tenant_id)
+        return None
+
+
+def get_license_metadata(
+    db_session: Session,
+    tenant_id: str | None = None,
+) -> LicenseMetadata | None:
+    """
+    Get license metadata, using cache if available.
+
+    Args:
+        db_session: Database session
+        tenant_id: Tenant ID (for multi-tenant deployments)
+
+    Returns:
+        LicenseMetadata if license exists, None otherwise
+    """
+    # Try cache first
+    cached = get_cached_license_metadata(tenant_id)
+    if cached:
+        return cached
+
+    # Refresh from database
+    return refresh_license_cache(db_session, tenant_id)

backend/ee/onyx/db/persona.py

@@ -34,6 +34,7 @@ def make_persona_private(
                 create_notification(
                     user_id=user_id,
                     notif_type=NotificationType.PERSONA_SHARED,
+                    title="A new agent was shared with you!",
                     db_session=db_session,
                     additional_data=PersonaSharedNotificationData(
                         persona_id=persona_id,

backend/ee/onyx/db/usage_export.py

@@ -55,18 +55,7 @@ def get_empty_chat_messages_entries__paginated(
 
             # Get assistant name (from session persona, or alternate if specified)
             assistant_name = None
-            if message.alternate_assistant_id:
-                # If there's an alternate assistant, we need to fetch it
-                from onyx.db.models import Persona
-
-                alternate_persona = (
-                    db_session.query(Persona)
-                    .filter(Persona.id == message.alternate_assistant_id)
-                    .first()
-                )
-                if alternate_persona:
-                    assistant_name = alternate_persona.name
-            elif chat_session.persona:
+            if chat_session.persona:
                 assistant_name = chat_session.persona.name
 
             message_skeletons.append(

backend/ee/onyx/db/user_group.py

@@ -8,6 +8,7 @@ from sqlalchemy import func
 from sqlalchemy import Select
 from sqlalchemy import select
 from sqlalchemy import update
+from sqlalchemy.dialects.postgresql import insert
 from sqlalchemy.orm import Session
 
 from ee.onyx.server.user_group.models import SetCuratorRequest
@@ -362,14 +363,29 @@ def _check_user_group_is_modifiable(user_group: UserGroup) -> None:
 
 def _add_user__user_group_relationships__no_commit(
     db_session: Session, user_group_id: int, user_ids: list[UUID]
-) -> list[User__UserGroup]:
-    """NOTE: does not commit the transaction."""
-    relationships = [
-        User__UserGroup(user_id=user_id, user_group_id=user_group_id)
-        for user_id in user_ids
-    ]
-    db_session.add_all(relationships)
-    return relationships
+) -> None:
+    """NOTE: does not commit the transaction.
+
+    This function is idempotent - it will skip users who are already in the group
+    to avoid duplicate key violations during concurrent operations or re-syncs.
+    Uses ON CONFLICT DO NOTHING to keep inserts atomic under concurrency.
+    """
+    if not user_ids:
+        return
+
+    insert_stmt = (
+        insert(User__UserGroup)
+        .values(
+            [
+                {"user_id": user_id, "user_group_id": user_group_id}
+                for user_id in user_ids
+            ]
+        )
+        .on_conflict_do_nothing(
+            index_elements=[User__UserGroup.user_group_id, User__UserGroup.user_id]
+        )
+    )
+    db_session.execute(insert_stmt)
 
 
 def _add_user_group__cc_pair_relationships__no_commit(
@@ -581,6 +597,48 @@ def update_user_curator_relationship(
     db_session.commit()
 
 
+def add_users_to_user_group(
+    db_session: Session,
+    user: User | None,
+    user_group_id: int,
+    user_ids: list[UUID],
+) -> UserGroup:
+    db_user_group = fetch_user_group(db_session=db_session, user_group_id=user_group_id)
+    if db_user_group is None:
+        raise ValueError(f"UserGroup with id '{user_group_id}' not found")
+
+    missing_users = [
+        user_id for user_id in user_ids if fetch_user_by_id(db_session, user_id) is None
+    ]
+    if missing_users:
+        raise ValueError(
+            f"User(s) not found: {', '.join(str(user_id) for user_id in missing_users)}"
+        )
+
+    _check_user_group_is_modifiable(db_user_group)
+
+    current_user_ids = [user.id for user in db_user_group.users]
+    current_user_ids_set = set(current_user_ids)
+    new_user_ids = [
+        user_id for user_id in user_ids if user_id not in current_user_ids_set
+    ]
+
+    if not new_user_ids:
+        return db_user_group
+
+    user_group_update = UserGroupUpdate(
+        user_ids=current_user_ids + new_user_ids,
+        cc_pair_ids=[cc_pair.id for cc_pair in db_user_group.cc_pairs],
+    )
+
+    return update_user_group(
+        db_session=db_session,
+        user=user,
+        user_group_id=user_group_id,
+        user_group_update=user_group_update,
+    )
+
+
 def update_user_group(
     db_session: Session,
     user: User | None,
@@ -603,6 +661,17 @@ def update_user_group(
     added_user_ids = list(updated_user_ids - current_user_ids)
     removed_user_ids = list(current_user_ids - updated_user_ids)
 
+    if added_user_ids:
+        missing_users = [
+            user_id
+            for user_id in added_user_ids
+            if fetch_user_by_id(db_session, user_id) is None
+        ]
+        if missing_users:
+            raise ValueError(
+                f"User(s) not found: {', '.join(str(user_id) for user_id in missing_users)}"
+            )
+
     # LEAVING THIS HERE FOR NOW FOR GIVING DIFFERENT ROLES
     # ACCESS TO DIFFERENT PERMISSIONS
     # if (removed_user_ids or added_user_ids) and (

backend/ee/onyx/external_permissions/confluence/group_sync.py

@@ -3,12 +3,15 @@ from collections.abc import Generator
 from ee.onyx.db.external_perm import ExternalUserGroup
 from ee.onyx.external_permissions.confluence.constants import ALL_CONF_EMAILS_GROUP_NAME
 from onyx.background.error_logging import emit_background_error
+from onyx.configs.app_configs import CONFLUENCE_USE_ONYX_USERS_FOR_GROUP_SYNC
 from onyx.connectors.confluence.onyx_confluence import (
     get_user_email_from_username__server,
 )
 from onyx.connectors.confluence.onyx_confluence import OnyxConfluence
 from onyx.connectors.credentials_provider import OnyxDBCredentialsProvider
+from onyx.db.engine.sql_engine import get_session_with_current_tenant
 from onyx.db.models import ConnectorCredentialPair
+from onyx.db.users import get_all_users
 from onyx.utils.logger import setup_logger
 
 logger = setup_logger()
@@ -19,7 +22,7 @@ def _build_group_member_email_map(
 ) -> dict[str, set[str]]:
     group_member_emails: dict[str, set[str]] = {}
     for user in confluence_client.paginated_cql_user_retrieval():
-        logger.debug(f"Processing groups for user: {user}")
+        logger.info(f"Processing groups for user: {user}")
 
         email = user.email
         if not email:
@@ -31,6 +34,8 @@ def _build_group_member_email_map(
                     confluence_client=confluence_client,
                     user_name=user_name,
                 )
+            else:
+                logger.error(f"user result missing username field: {user}")
 
         if not email:
             # If we still don't have an email, skip this user
@@ -64,6 +69,92 @@ def _build_group_member_email_map(
     return group_member_emails
 
 
+def _build_group_member_email_map_from_onyx_users(
+    confluence_client: OnyxConfluence,
+) -> dict[str, set[str]]:
+    """Hacky, but it's the only way to do this as long as the
+    Confluence APIs are broken.
+
+    This is fixed in Confluence Data Center 10.1.0, so first choice
+    is to tell users to upgrade to 10.1.0.
+    https://jira.atlassian.com/browse/CONFSERVER-95999
+    """
+    with get_session_with_current_tenant() as db_session:
+        # don't include external since they are handled by the "through confluence"
+        # user fetching mechanism
+        user_emails = [
+            user.email for user in get_all_users(db_session, include_external=False)
+        ]
+
+    def _infer_username_from_email(email: str) -> str:
+        return email.split("@")[0]
+
+    group_member_emails: dict[str, set[str]] = {}
+    for email in user_emails:
+        logger.info(f"Processing groups for user with email: {email}")
+        try:
+            user_name = _infer_username_from_email(email)
+            response = confluence_client.get_user_details_by_username(user_name)
+            user_key = response.get("userKey")
+            if not user_key:
+                logger.error(f"User key not found for user with email {email}")
+                continue
+
+            all_users_groups: set[str] = set()
+            for group in confluence_client.paginated_groups_by_user_retrieval(user_key):
+                # group name uniqueness is enforced by Confluence, so we can use it as a group ID
+                group_id = group["name"]
+                group_member_emails.setdefault(group_id, set()).add(email)
+                all_users_groups.add(group_id)
+
+            if not all_users_groups:
+                msg = f"No groups found for user with email: {email}"
+                logger.error(msg)
+            else:
+                logger.info(
+                    f"Found groups {all_users_groups} for user with email {email}"
+                )
+        except Exception:
+            logger.exception(f"Error getting user details for user with email {email}")
+
+    return group_member_emails
+
+
+def _build_final_group_to_member_email_map(
+    confluence_client: OnyxConfluence,
+    cc_pair_id: int,
+    # if set, will infer confluence usernames from onyx users in addition to using the
+    # confluence users API. This is a hacky workaround for the fact that the Confluence
+    # users API is broken before Confluence Data Center 10.1.0.
+    use_onyx_users: bool = CONFLUENCE_USE_ONYX_USERS_FOR_GROUP_SYNC,
+) -> dict[str, set[str]]:
+    group_to_member_email_map = _build_group_member_email_map(
+        confluence_client=confluence_client,
+        cc_pair_id=cc_pair_id,
+    )
+    group_to_member_email_map_from_onyx_users = (
+        (
+            _build_group_member_email_map_from_onyx_users(
+                confluence_client=confluence_client,
+            )
+        )
+        if use_onyx_users
+        else {}
+    )
+
+    all_group_ids = set(group_to_member_email_map.keys()) | set(
+        group_to_member_email_map_from_onyx_users.keys()
+    )
+    final_group_to_member_email_map = {}
+    for group_id in all_group_ids:
+        group_member_emails = group_to_member_email_map.get(
+            group_id, set()
+        ) | group_to_member_email_map_from_onyx_users.get(group_id, set())
+        final_group_to_member_email_map[group_id] = group_member_emails
+
+    return final_group_to_member_email_map
+
+
 def confluence_group_sync(
     tenant_id: str,
     cc_pair: ConnectorCredentialPair,
@@ -87,13 +178,12 @@ def confluence_group_sync(
     confluence_client._probe_connection(**probe_kwargs)
     confluence_client._initialize_connection(**final_kwargs)
 
-    group_member_email_map = _build_group_member_email_map(
-        confluence_client=confluence_client,
-        cc_pair_id=cc_pair.id,
+    group_to_member_email_map = _build_final_group_to_member_email_map(
+        confluence_client, cc_pair.id
     )
 
     all_found_emails = set()
-    for group_id, group_member_emails in group_member_email_map.items():
+    for group_id, group_member_emails in group_to_member_email_map.items():
         yield (
             ExternalUserGroup(
                 id=group_id,

backend/ee/onyx/external_permissions/jira/group_sync.py

@@ -0,0 +1,136 @@
+from collections.abc import Generator
+
+from jira import JIRA
+
+from ee.onyx.db.external_perm import ExternalUserGroup
+from onyx.connectors.jira.utils import build_jira_client
+from onyx.db.models import ConnectorCredentialPair
+from onyx.utils.logger import setup_logger
+
+logger = setup_logger()
+
+
+def _get_jira_group_members_email(
+    jira_client: JIRA,
+    group_name: str,
+) -> list[str]:
+    """Get all member emails for a Jira group.
+
+    Filters out app accounts (bots, integrations) and only returns real user emails.
+    """
+    emails: list[str] = []
+
+    try:
+        # group_members returns an OrderedDict of account_id -> member_info
+        members = jira_client.group_members(group=group_name)
+
+        if not members:
+            logger.warning(f"No members found for group {group_name}")
+            return emails
+
+        for account_id, member_info in members.items():
+            # member_info is a dict with keys like 'fullname', 'email', 'active'
+            email = member_info.get("email")
+
+            # Skip "hidden" emails - these are typically app accounts
+            if email and email != "hidden":
+                emails.append(email)
+            else:
+                # For cloud, we might need to fetch user details separately
+                try:
+                    user = jira_client.user(id=account_id)
+
+                    # Skip app accounts (bots, integrations, etc.)
+                    if hasattr(user, "accountType") and user.accountType == "app":
+                        logger.info(
+                            f"Skipping app account {account_id} for group {group_name}"
+                        )
+                        continue
+
+                    if hasattr(user, "emailAddress") and user.emailAddress:
+                        emails.append(user.emailAddress)
+                    else:
+                        logger.warning(f"User {account_id} has no email address")
+                except Exception as e:
+                    logger.warning(
+                        f"Could not fetch email for user {account_id} in group {group_name}: {e}"
+                    )
+
+    except Exception as e:
+        logger.error(f"Error fetching members for group {group_name}: {e}")
+
+    return emails
+
+
+def _build_group_member_email_map(
+    jira_client: JIRA,
+) -> dict[str, set[str]]:
+    """Build a map of group names to member emails."""
+    group_member_emails: dict[str, set[str]] = {}
+
+    try:
+        # Get all groups from Jira - returns a list of group name strings
+        group_names = jira_client.groups()
+
+        if not group_names:
+            logger.warning("No groups found in Jira")
+            return group_member_emails
+
+        logger.info(f"Found {len(group_names)} groups in Jira")
+
+        for group_name in group_names:
+            if not group_name:
+                continue
+
+            member_emails = _get_jira_group_members_email(
+                jira_client=jira_client,
+                group_name=group_name,
+            )
+
+            if member_emails:
+                group_member_emails[group_name] = set(member_emails)
+                logger.debug(
+                    f"Found {len(member_emails)} members for group {group_name}"
+                )
+            else:
+                logger.debug(f"No members found for group {group_name}")
+
+    except Exception as e:
+        logger.error(f"Error building group member email map: {e}")
+
+    return group_member_emails
+
+
+def jira_group_sync(
+    tenant_id: str,
+    cc_pair: ConnectorCredentialPair,
+) -> Generator[ExternalUserGroup, None, None]:
+    """
+    Sync Jira groups and their members.
+
+    This function fetches all groups from Jira and yields ExternalUserGroup
+    objects containing the group ID and member emails.
+    """
+    jira_base_url = cc_pair.connector.connector_specific_config.get("jira_base_url", "")
+    scoped_token = cc_pair.connector.connector_specific_config.get(
+        "scoped_token", False
+    )
+
+    if not jira_base_url:
+        raise ValueError("No jira_base_url found in connector config")
+
+    jira_client = build_jira_client(
+        credentials=cc_pair.credential.credential_json,
+        jira_base=jira_base_url,
+        scoped_token=scoped_token,
+    )
+
+    group_member_email_map = _build_group_member_email_map(jira_client=jira_client)
+    if not group_member_email_map:
+        raise ValueError(f"No groups with members found for cc_pair_id={cc_pair.id}")
+
+    for group_id, group_member_emails in group_member_email_map.items():
+        yield ExternalUserGroup(
+            id=group_id,
+            user_emails=list(group_member_emails),
+        )

backend/ee/onyx/external_permissions/jira/page_access.py

@@ -16,6 +16,10 @@ HolderMap = dict[str, list[Holder]]
 logger = setup_logger()
 
 
+def _get_role_id(holder: Holder) -> str | None:
+    return holder.get("value") or holder.get("parameter")
+
+
 def _build_holder_map(permissions: list[dict]) -> dict[str, list[Holder]]:
     """
     A "Holder" in JIRA is a person / entity who "holds" the corresponding permission.
@@ -110,80 +114,137 @@ def _get_user_emails(user_holders: list[Holder]) -> list[str]:
     return emails
 
 
-def _get_user_emails_from_project_roles(
+def _get_user_emails_and_groups_from_project_roles(
     jira_client: JIRA,
     jira_project: str,
     project_role_holders: list[Holder],
-) -> list[str]:
-    # NOTE (@raunakab) a `parallel_yield` may be helpful here...?
+) -> tuple[list[str], list[str]]:
+    """
+    Get user emails and group names from project roles.
+    Returns a tuple of (emails, group_names).
+    """
+    # Get role IDs - Cloud uses "value", Data Center uses "parameter"
+    role_ids = []
+    for holder in project_role_holders:
+        role_id = _get_role_id(holder)
+        if role_id:
+            role_ids.append(role_id)
+        else:
+            logger.warning(f"No value or parameter in projectRole holder: {holder}")
+
     roles = [
-        jira_client.project_role(project=jira_project, id=project_role_holder["value"])
-        for project_role_holder in project_role_holders
-        if "value" in project_role_holder
+        jira_client.project_role(project=jira_project, id=role_id)
+        for role_id in role_ids
     ]
 
     emails = []
+    groups = []
 
     for role in roles:
         if not hasattr(role, "actors"):
+            logger.warning(f"Project role {role} has no actors attribute")
             continue
 
         for actor in role.actors:
-            if not hasattr(actor, "actorUser") or not hasattr(
-                actor.actorUser, "accountId"
-            ):
+            # Handle group actors
+            if hasattr(actor, "actorGroup"):
+                group_name = getattr(actor.actorGroup, "name", None) or getattr(
+                    actor.actorGroup, "displayName", None
+                )
+                if group_name:
+                    groups.append(group_name)
                 continue
 
-            user = jira_client.user(id=actor.actorUser.accountId)
-            if not hasattr(user, "accountType") or user.accountType != "atlassian":
+            # Handle user actors
+            if hasattr(actor, "actorUser"):
+                account_id = getattr(actor.actorUser, "accountId", None)
+                if not account_id:
+                    logger.error(f"No accountId in actorUser: {actor.actorUser}")
+                    continue
+
+                user = jira_client.user(id=account_id)
+                if not hasattr(user, "accountType") or user.accountType != "atlassian":
+                    logger.info(
+                        f"Skipping user {account_id} because it is not an atlassian user"
+                    )
+                    continue
+
+                if not hasattr(user, "emailAddress"):
+                    msg = f"User's email address was not able to be retrieved;  {actor.actorUser.accountId=}"
+                    if hasattr(user, "displayName"):
+                        msg += f" {actor.displayName=}"
+                    logger.warning(msg)
+                    continue
+
+                emails.append(user.emailAddress)
                 continue
 
-            if not hasattr(user, "emailAddress"):
-                msg = f"User's email address was not able to be retrieved;  {actor.actorUser.accountId=}"
-                if hasattr(user, "displayName"):
-                    msg += f" {actor.displayName=}"
-                logger.warn(msg)
-                continue
+            logger.debug(f"Skipping actor type: {actor}")
 
-            emails.append(user.emailAddress)
-
-    return emails
+    return emails, groups
 
 
 def _build_external_access_from_holder_map(
     jira_client: JIRA, jira_project: str, holder_map: HolderMap
 ) -> ExternalAccess:
     """
-    # Note:
-        If the `holder_map` contains an instance of "anyone", then this is a public JIRA project.
-        Otherwise, we fetch the "projectRole"s (i.e., the user-groups in JIRA speak), and the user emails.
-    """
+    Build ExternalAccess from the holder map.
 
+    Holder types handled:
+        - "anyone": Public project, anyone can access
+        - "applicationRole": All users with a Jira license can access (treated as public)
+        - "user": Specific users with access
+        - "projectRole": Project roles containing users and/or groups
+        - "group": Groups directly assigned in the permission scheme
+    """
+    # Public access - anyone can view
     if "anyone" in holder_map:
         return ExternalAccess(
             external_user_emails=set(), external_user_group_ids=set(), is_public=True
         )
 
+    # applicationRole means all users with a Jira license can access - treat as public
+    if "applicationRole" in holder_map:
+        return ExternalAccess(
+            external_user_emails=set(), external_user_group_ids=set(), is_public=True
+        )
+
+    # Get emails from explicit user holders
     user_emails = (
         _get_user_emails(user_holders=holder_map["user"])
         if "user" in holder_map
         else []
     )
-    project_role_user_emails = (
-        _get_user_emails_from_project_roles(
-            jira_client=jira_client,
-            jira_project=jira_project,
-            project_role_holders=holder_map["projectRole"],
+
+    # Get emails and groups from project roles
+    project_role_user_emails: list[str] = []
+    project_role_groups: list[str] = []
+    if "projectRole" in holder_map:
+        project_role_user_emails, project_role_groups = (
+            _get_user_emails_and_groups_from_project_roles(
+                jira_client=jira_client,
+                jira_project=jira_project,
+                project_role_holders=holder_map["projectRole"],
+            )
         )
-        if "projectRole" in holder_map
-        else []
-    )
+
+    # Get groups directly assigned in permission scheme (common in Data Center)
+    # Format: {'type': 'group', 'parameter': 'group-name', 'expand': 'group'}
+    direct_groups: list[str] = []
+    if "group" in holder_map:
+        for group_holder in holder_map["group"]:
+            group_name = _get_role_id(group_holder)
+            if group_name:
+                direct_groups.append(group_name)
+            else:
+                logger.error(f"No parameter/value in group holder: {group_holder}")
 
     external_user_emails = set(user_emails + project_role_user_emails)
+    external_user_group_ids = set(project_role_groups + direct_groups)
 
     return ExternalAccess(
         external_user_emails=external_user_emails,
-        external_user_group_ids=set(),
+        external_user_group_ids=external_user_group_ids,
         is_public=False,
     )
 
@@ -197,9 +258,11 @@ def get_project_permissions(
     )
 
     if not hasattr(project_permissions, "permissions"):
+        logger.error(f"Project {jira_project} has no permissions attribute")
         return None
 
     if not isinstance(project_permissions.permissions, list):
+        logger.error(f"Project {jira_project} permissions is not a list")
         return None
 
     holder_map = _build_holder_map(permissions=project_permissions.permissions)

backend/ee/onyx/external_permissions/sharepoint/permission_utils.py

@@ -15,6 +15,7 @@ from ee.onyx.db.external_perm import ExternalUserGroup
 from onyx.access.models import ExternalAccess
 from onyx.access.utils import build_ext_group_name_for_onyx
 from onyx.configs.constants import DocumentSource
+from onyx.connectors.sharepoint.connector import SHARED_DOCUMENTS_MAP_REVERSE
 from onyx.connectors.sharepoint.connector import sleep_and_retry
 from onyx.utils.logger import setup_logger
 
@@ -511,8 +512,8 @@ def get_external_access_from_sharepoint(
                 f"Failed to get SharePoint list item ID for item {drive_item.id}"
             )
 
-        if drive_name == "Shared Documents":
-            drive_name = "Documents"
+        if drive_name in SHARED_DOCUMENTS_MAP_REVERSE:
+            drive_name = SHARED_DOCUMENTS_MAP_REVERSE[drive_name]
 
         item = client_context.web.lists.get_by_title(drive_name).items.get_by_id(
             item_id

backend/ee/onyx/external_permissions/sync_params.py

@@ -11,6 +11,7 @@ from ee.onyx.configs.app_configs import GITHUB_PERMISSION_DOC_SYNC_FREQUENCY
 from ee.onyx.configs.app_configs import GITHUB_PERMISSION_GROUP_SYNC_FREQUENCY
 from ee.onyx.configs.app_configs import GOOGLE_DRIVE_PERMISSION_GROUP_SYNC_FREQUENCY
 from ee.onyx.configs.app_configs import JIRA_PERMISSION_DOC_SYNC_FREQUENCY
+from ee.onyx.configs.app_configs import JIRA_PERMISSION_GROUP_SYNC_FREQUENCY
 from ee.onyx.configs.app_configs import SHAREPOINT_PERMISSION_DOC_SYNC_FREQUENCY
 from ee.onyx.configs.app_configs import SHAREPOINT_PERMISSION_GROUP_SYNC_FREQUENCY
 from ee.onyx.configs.app_configs import SLACK_PERMISSION_DOC_SYNC_FREQUENCY
@@ -23,6 +24,7 @@ from ee.onyx.external_permissions.gmail.doc_sync import gmail_doc_sync
 from ee.onyx.external_permissions.google_drive.doc_sync import gdrive_doc_sync
 from ee.onyx.external_permissions.google_drive.group_sync import gdrive_group_sync
 from ee.onyx.external_permissions.jira.doc_sync import jira_doc_sync
+from ee.onyx.external_permissions.jira.group_sync import jira_group_sync
 from ee.onyx.external_permissions.perm_sync_types import CensoringFuncType
 from ee.onyx.external_permissions.perm_sync_types import DocSyncFuncType
 from ee.onyx.external_permissions.perm_sync_types import FetchAllDocumentsFunction
@@ -110,6 +112,11 @@ _SOURCE_TO_SYNC_CONFIG: dict[DocumentSource, SyncConfig] = {
             doc_sync_func=jira_doc_sync,
             initial_index_should_sync=True,
         ),
+        group_sync_config=GroupSyncConfig(
+            group_sync_frequency=JIRA_PERMISSION_GROUP_SYNC_FREQUENCY,
+            group_sync_func=jira_group_sync,
+            group_sync_is_cc_pair_agnostic=True,
+        ),
     ),
     # Groups are not needed for Slack.
     # All channel access is done at the individual user level.

backend/ee/onyx/main.py

@@ -14,6 +14,7 @@ from ee.onyx.server.enterprise_settings.api import (
     basic_router as enterprise_settings_router,
 )
 from ee.onyx.server.evals.api import router as evals_router
+from ee.onyx.server.license.api import router as license_router
 from ee.onyx.server.manage.standard_answer import router as standard_answer_router
 from ee.onyx.server.middleware.tenant_tracking import (
     add_api_server_tenant_id_middleware,
@@ -139,6 +140,8 @@ def get_application() -> FastAPI:
     )
     include_router_with_global_prefix_prepended(application, enterprise_settings_router)
     include_router_with_global_prefix_prepended(application, usage_export_router)
+    # License management
+    include_router_with_global_prefix_prepended(application, license_router)
 
     if MULTI_TENANT:
         # Tenant management

backend/ee/onyx/server/analytics/api.py

@@ -21,8 +21,9 @@ from onyx.auth.users import current_admin_user
 from onyx.auth.users import current_user
 from onyx.db.engine.sql_engine import get_session
 from onyx.db.models import User
+from onyx.server.utils import PUBLIC_API_TAGS
 
-router = APIRouter(prefix="/analytics")
+router = APIRouter(prefix="/analytics", tags=PUBLIC_API_TAGS)
 
 
 _DEFAULT_LOOKBACK_DAYS = 30

backend/ee/onyx/server/enterprise_settings/models.py

@@ -1,3 +1,4 @@
+from enum import Enum
 from typing import Any
 from typing import List
 
@@ -23,6 +24,12 @@ class NavigationItem(BaseModel):
         return instance
 
 
+class LogoDisplayStyle(str, Enum):
+    LOGO_AND_NAME = "logo_and_name"
+    LOGO_ONLY = "logo_only"
+    NAME_ONLY = "name_only"
+
+
 class EnterpriseSettings(BaseModel):
     """General settings that only apply to the Enterprise Edition of Onyx
 
@@ -31,6 +38,7 @@ class EnterpriseSettings(BaseModel):
     application_name: str | None = None
     use_custom_logo: bool = False
     use_custom_logotype: bool = False
+    logo_display_style: LogoDisplayStyle | None = None
 
     # custom navigation
     custom_nav_items: List[NavigationItem] = Field(default_factory=list)
@@ -42,6 +50,9 @@ class EnterpriseSettings(BaseModel):
     custom_popup_header: str | None = None
     custom_popup_content: str | None = None
     enable_consent_screen: bool | None = None
+    consent_screen_prompt: str | None = None
+    show_first_visit_notice: bool | None = None
+    custom_greeting_message: str | None = None
 
     def check_validity(self) -> None:
         return

backend/ee/onyx/server/license/api.py

@@ -0,0 +1,246 @@
+"""License API endpoints."""
+
+import requests
+from fastapi import APIRouter
+from fastapi import Depends
+from fastapi import File
+from fastapi import HTTPException
+from fastapi import UploadFile
+from sqlalchemy.orm import Session
+
+from ee.onyx.auth.users import current_admin_user
+from ee.onyx.db.license import delete_license as db_delete_license
+from ee.onyx.db.license import get_license_metadata
+from ee.onyx.db.license import invalidate_license_cache
+from ee.onyx.db.license import refresh_license_cache
+from ee.onyx.db.license import update_license_cache
+from ee.onyx.db.license import upsert_license
+from ee.onyx.server.license.models import LicenseResponse
+from ee.onyx.server.license.models import LicenseSource
+from ee.onyx.server.license.models import LicenseStatusResponse
+from ee.onyx.server.license.models import LicenseUploadResponse
+from ee.onyx.server.license.models import SeatUsageResponse
+from ee.onyx.server.tenants.access import generate_data_plane_token
+from ee.onyx.utils.license import verify_license_signature
+from onyx.auth.users import User
+from onyx.configs.app_configs import CONTROL_PLANE_API_BASE_URL
+from onyx.db.engine.sql_engine import get_session
+from onyx.utils.logger import setup_logger
+from shared_configs.contextvars import get_current_tenant_id
+
+logger = setup_logger()
+
+router = APIRouter(prefix="/license")
+
+
+@router.get("")
+async def get_license_status(
+    _: User = Depends(current_admin_user),
+    db_session: Session = Depends(get_session),
+) -> LicenseStatusResponse:
+    """Get current license status and seat usage."""
+    metadata = get_license_metadata(db_session)
+
+    if not metadata:
+        return LicenseStatusResponse(has_license=False)
+
+    return LicenseStatusResponse(
+        has_license=True,
+        seats=metadata.seats,
+        used_seats=metadata.used_seats,
+        plan_type=metadata.plan_type,
+        issued_at=metadata.issued_at,
+        expires_at=metadata.expires_at,
+        grace_period_end=metadata.grace_period_end,
+        status=metadata.status,
+        source=metadata.source,
+    )
+
+
+@router.get("/seats")
+async def get_seat_usage(
+    _: User = Depends(current_admin_user),
+    db_session: Session = Depends(get_session),
+) -> SeatUsageResponse:
+    """Get detailed seat usage information."""
+    metadata = get_license_metadata(db_session)
+
+    if not metadata:
+        return SeatUsageResponse(
+            total_seats=0,
+            used_seats=0,
+            available_seats=0,
+        )
+
+    return SeatUsageResponse(
+        total_seats=metadata.seats,
+        used_seats=metadata.used_seats,
+        available_seats=max(0, metadata.seats - metadata.used_seats),
+    )
+
+
+@router.post("/fetch")
+async def fetch_license(
+    _: User = Depends(current_admin_user),
+    db_session: Session = Depends(get_session),
+) -> LicenseResponse:
+    """
+    Fetch license from control plane.
+    Used after Stripe checkout completion to retrieve the new license.
+    """
+    tenant_id = get_current_tenant_id()
+
+    try:
+        token = generate_data_plane_token()
+    except ValueError as e:
+        logger.error(f"Failed to generate data plane token: {e}")
+        raise HTTPException(
+            status_code=500, detail="Authentication configuration error"
+        )
+
+    try:
+        headers = {
+            "Authorization": f"Bearer {token}",
+            "Content-Type": "application/json",
+        }
+        url = f"{CONTROL_PLANE_API_BASE_URL}/license/{tenant_id}"
+        response = requests.get(url, headers=headers, timeout=10)
+        response.raise_for_status()
+
+        data = response.json()
+        if not isinstance(data, dict) or "license" not in data:
+            raise HTTPException(
+                status_code=502, detail="Invalid response from control plane"
+            )
+
+        license_data = data["license"]
+        if not license_data:
+            raise HTTPException(status_code=404, detail="No license found")
+
+        # Verify signature before persisting
+        payload = verify_license_signature(license_data)
+
+        # Verify the fetched license is for this tenant
+        if payload.tenant_id != tenant_id:
+            logger.error(
+                f"License tenant mismatch: expected {tenant_id}, got {payload.tenant_id}"
+            )
+            raise HTTPException(
+                status_code=400,
+                detail="License tenant ID mismatch - control plane returned wrong license",
+            )
+
+        # Persist to DB and update cache atomically
+        upsert_license(db_session, license_data)
+        try:
+            update_license_cache(payload, source=LicenseSource.AUTO_FETCH)
+        except Exception as cache_error:
+            # Log but don't fail - DB is source of truth, cache will refresh on next read
+            logger.warning(f"Failed to update license cache: {cache_error}")
+
+        return LicenseResponse(success=True, license=payload)
+
+    except requests.HTTPError as e:
+        status_code = e.response.status_code if e.response is not None else 502
+        logger.error(f"Control plane returned error: {status_code}")
+        raise HTTPException(
+            status_code=status_code,
+            detail="Failed to fetch license from control plane",
+        )
+    except ValueError as e:
+        logger.error(f"License verification failed: {type(e).__name__}")
+        raise HTTPException(status_code=400, detail=str(e))
+    except requests.RequestException:
+        logger.exception("Failed to fetch license from control plane")
+        raise HTTPException(
+            status_code=502, detail="Failed to connect to control plane"
+        )
+
+
+@router.post("/upload")
+async def upload_license(
+    license_file: UploadFile = File(...),
+    _: User = Depends(current_admin_user),
+    db_session: Session = Depends(get_session),
+) -> LicenseUploadResponse:
+    """
+    Upload a license file manually.
+    Used for air-gapped deployments where control plane is not accessible.
+    """
+    try:
+        content = await license_file.read()
+        license_data = content.decode("utf-8").strip()
+    except UnicodeDecodeError:
+        raise HTTPException(status_code=400, detail="Invalid license file format")
+
+    try:
+        payload = verify_license_signature(license_data)
+    except ValueError as e:
+        raise HTTPException(status_code=400, detail=str(e))
+
+    tenant_id = get_current_tenant_id()
+    if payload.tenant_id != tenant_id:
+        raise HTTPException(
+            status_code=400,
+            detail=f"License tenant ID mismatch. Expected {tenant_id}, got {payload.tenant_id}",
+        )
+
+    # Persist to DB and update cache
+    upsert_license(db_session, license_data)
+    try:
+        update_license_cache(payload, source=LicenseSource.MANUAL_UPLOAD)
+    except Exception as cache_error:
+        # Log but don't fail - DB is source of truth, cache will refresh on next read
+        logger.warning(f"Failed to update license cache: {cache_error}")
+
+    return LicenseUploadResponse(
+        success=True,
+        message=f"License uploaded successfully. {payload.seats} seats, expires {payload.expires_at.date()}",
+    )
+
+
+@router.post("/refresh")
+async def refresh_license_cache_endpoint(
+    _: User = Depends(current_admin_user),
+    db_session: Session = Depends(get_session),
+) -> LicenseStatusResponse:
+    """
+    Force refresh the license cache from the database.
+    Useful after manual database changes or to verify license validity.
+    """
+    metadata = refresh_license_cache(db_session)
+
+    if not metadata:
+        return LicenseStatusResponse(has_license=False)
+
+    return LicenseStatusResponse(
+        has_license=True,
+        seats=metadata.seats,
+        used_seats=metadata.used_seats,
+        plan_type=metadata.plan_type,
+        issued_at=metadata.issued_at,
+        expires_at=metadata.expires_at,
+        grace_period_end=metadata.grace_period_end,
+        status=metadata.status,
+        source=metadata.source,
+    )
+
+
+@router.delete("")
+async def delete_license(
+    _: User = Depends(current_admin_user),
+    db_session: Session = Depends(get_session),
+) -> dict[str, bool]:
+    """
+    Delete the current license.
+    Admin only - removes license and invalidates cache.
+    """
+    # Invalidate cache first - if DB delete fails, stale cache is worse than no cache
+    try:
+        invalidate_license_cache()
+    except Exception as cache_error:
+        logger.warning(f"Failed to invalidate license cache: {cache_error}")
+
+    deleted = db_delete_license(db_session)
+
+    return {"deleted": deleted}

backend/ee/onyx/server/license/models.py

@@ -0,0 +1,92 @@
+from datetime import datetime
+from enum import Enum
+
+from pydantic import BaseModel
+
+from onyx.server.settings.models import ApplicationStatus
+
+
+class PlanType(str, Enum):
+    MONTHLY = "monthly"
+    ANNUAL = "annual"
+
+
+class LicenseSource(str, Enum):
+    AUTO_FETCH = "auto_fetch"
+    MANUAL_UPLOAD = "manual_upload"
+
+
+class LicensePayload(BaseModel):
+    """The payload portion of a signed license."""
+
+    version: str
+    tenant_id: str
+    organization_name: str | None = None
+    issued_at: datetime
+    expires_at: datetime
+    seats: int
+    plan_type: PlanType
+    billing_cycle: str | None = None
+    grace_period_days: int = 30
+    stripe_subscription_id: str | None = None
+    stripe_customer_id: str | None = None
+
+
+class LicenseData(BaseModel):
+    """Full signed license structure."""
+
+    payload: LicensePayload
+    signature: str
+
+
+class LicenseMetadata(BaseModel):
+    """Cached license metadata stored in Redis."""
+
+    tenant_id: str
+    organization_name: str | None = None
+    seats: int
+    used_seats: int
+    plan_type: PlanType
+    issued_at: datetime
+    expires_at: datetime
+    grace_period_end: datetime | None = None
+    status: ApplicationStatus
+    source: LicenseSource | None = None
+    stripe_subscription_id: str | None = None
+
+
+class LicenseStatusResponse(BaseModel):
+    """Response for license status API."""
+
+    has_license: bool
+    seats: int = 0
+    used_seats: int = 0
+    plan_type: PlanType | None = None
+    issued_at: datetime | None = None
+    expires_at: datetime | None = None
+    grace_period_end: datetime | None = None
+    status: ApplicationStatus | None = None
+    source: LicenseSource | None = None
+
+
+class LicenseResponse(BaseModel):
+    """Response after license fetch/upload."""
+
+    success: bool
+    message: str | None = None
+    license: LicensePayload | None = None
+
+
+class LicenseUploadResponse(BaseModel):
+    """Response after license upload."""
+
+    success: bool
+    message: str | None = None
+
+
+class SeatUsageResponse(BaseModel):
+    """Response for seat usage API."""
+
+    total_seats: int
+    used_seats: int
+    available_seats: int

backend/ee/onyx/server/query_and_chat/chat_backend.py

@@ -8,12 +8,10 @@ from ee.onyx.server.query_and_chat.models import (
     BasicCreateChatMessageWithHistoryRequest,
 )
 from onyx.auth.users import current_user
-from onyx.chat.chat_utils import combine_message_thread
-from onyx.chat.chat_utils import create_chat_chain
+from onyx.chat.chat_utils import create_chat_history_chain
 from onyx.chat.models import ChatBasicResponse
 from onyx.chat.process_message import gather_stream
 from onyx.chat.process_message import stream_chat_message_objects
-from onyx.configs.chat_configs import CHAT_TARGET_CHUNK_PERCENTAGE
 from onyx.configs.constants import MessageType
 from onyx.context.search.models import OptionalSearchSetting
 from onyx.context.search.models import RetrievalDetails
@@ -22,9 +20,8 @@ from onyx.db.chat import create_new_chat_message
 from onyx.db.chat import get_or_create_root_message
 from onyx.db.engine.sql_engine import get_session
 from onyx.db.models import User
-from onyx.llm.factory import get_llms_for_persona
+from onyx.llm.factory import get_llm_for_persona
 from onyx.natural_language_processing.utils import get_tokenizer
-from onyx.secondary_llm_flows.query_expansion import thread_based_query_rephrase
 from onyx.server.query_and_chat.models import CreateChatMessageRequest
 from onyx.utils.logger import setup_logger
 
@@ -69,9 +66,9 @@ def handle_simplified_chat_message(
         chat_session_id = chat_message_req.chat_session_id
 
     try:
-        parent_message, _ = create_chat_chain(
+        parent_message = create_chat_history_chain(
             chat_session_id=chat_session_id, db_session=db_session
-        )
+        )[-1]
     except Exception:
         parent_message = get_or_create_root_message(
             chat_session_id=chat_session_id, db_session=db_session
@@ -103,14 +100,12 @@ def handle_simplified_chat_message(
         chunks_below=0,
         full_doc=chat_message_req.full_doc,
         structured_response_format=chat_message_req.structured_response_format,
-        use_agentic_search=chat_message_req.use_agentic_search,
     )
 
     packets = stream_chat_message_objects(
         new_msg_req=full_chat_msg_info,
         user=user,
         db_session=db_session,
-        enforce_chat_session_id_for_search_docs=False,
     )
 
     return gather_stream(packets)
@@ -161,15 +156,13 @@ def handle_send_message_simple_with_history(
         persona_id=req.persona_id,
     )
 
-    llm, _ = get_llms_for_persona(persona=chat_session.persona, user=user)
+    llm = get_llm_for_persona(persona=chat_session.persona, user=user)
 
     llm_tokenizer = get_tokenizer(
         model_name=llm.config.model_name,
         provider_type=llm.config.model_provider,
     )
 
-    max_history_tokens = int(llm.config.max_input_tokens * CHAT_TARGET_CHUNK_PERCENTAGE)
-
     # Every chat Session begins with an empty root message
     root_message = get_or_create_root_message(
         chat_session_id=chat_session.id, db_session=db_session
@@ -188,17 +181,6 @@ def handle_send_message_simple_with_history(
         )
     db_session.commit()
 
-    history_str = combine_message_thread(
-        messages=msg_history,
-        max_tokens=max_history_tokens,
-        llm_tokenizer=llm_tokenizer,
-    )
-
-    rephrased_query = req.query_override or thread_based_query_rephrase(
-        user_query=query,
-        history_str=history_str,
-    )
-
     if req.retrieval_options is None and req.search_doc_ids is None:
         retrieval_options: RetrievalDetails | None = RetrievalDetails(
             run_search=OptionalSearchSetting.ALWAYS,
@@ -216,19 +198,17 @@ def handle_send_message_simple_with_history(
         retrieval_options=retrieval_options,
         # Simple API does not support reranking, hide complexity from user
         rerank_settings=None,
-        query_override=rephrased_query,
+        query_override=None,
         chunks_above=0,
         chunks_below=0,
         full_doc=req.full_doc,
         structured_response_format=req.structured_response_format,
-        use_agentic_search=req.use_agentic_search,
     )
 
     packets = stream_chat_message_objects(
         new_msg_req=full_chat_msg_info,
         user=user,
         db_session=db_session,
-        enforce_chat_session_id_for_search_docs=False,
     )
 
     return gather_stream(packets)

backend/ee/onyx/server/query_and_chat/models.py

@@ -8,10 +8,29 @@ from pydantic import model_validator
 
 from onyx.chat.models import ThreadMessage
 from onyx.configs.constants import DocumentSource
+from onyx.context.search.models import BaseFilters
+from onyx.context.search.models import BasicChunkRequest
 from onyx.context.search.models import ChunkContext
+from onyx.context.search.models import InferenceChunk
 from onyx.context.search.models import RetrievalDetails
 from onyx.server.manage.models import StandardAnswer
-from onyx.server.query_and_chat.streaming_models import SubQuestionIdentifier
+
+
+class StandardAnswerRequest(BaseModel):
+    message: str
+    slack_bot_categories: list[str]
+
+
+class StandardAnswerResponse(BaseModel):
+    standard_answers: list[StandardAnswer] = Field(default_factory=list)
+
+
+class DocumentSearchRequest(BasicChunkRequest):
+    user_selected_filters: BaseFilters | None = None
+
+
+class DocumentSearchResponse(BaseModel):
+    top_documents: list[InferenceChunk]
 
 
 class BasicCreateChatMessageRequest(ChunkContext):
@@ -35,9 +54,6 @@ class BasicCreateChatMessageRequest(ChunkContext):
     # https://platform.openai.com/docs/guides/structured-outputs/introduction
     structured_response_format: dict | None = None
 
-    # If True, uses agentic search instead of basic search
-    use_agentic_search: bool = False
-
     @model_validator(mode="after")
     def validate_chat_session_or_persona(self) -> "BasicCreateChatMessageRequest":
         if self.chat_session_id is None and self.persona_id is None:
@@ -57,8 +73,6 @@ class BasicCreateChatMessageWithHistoryRequest(ChunkContext):
     # only works if using an OpenAI model. See the following for more details:
     # https://platform.openai.com/docs/guides/structured-outputs/introduction
     structured_response_format: dict | None = None
-    # If True, uses agentic search instead of basic search
-    use_agentic_search: bool = False
 
 
 class SimpleDoc(BaseModel):
@@ -71,17 +85,17 @@ class SimpleDoc(BaseModel):
     metadata: dict | None
 
 
-class AgentSubQuestion(SubQuestionIdentifier):
+class AgentSubQuestion(BaseModel):
     sub_question: str
     document_ids: list[str]
 
 
-class AgentAnswer(SubQuestionIdentifier):
+class AgentAnswer(BaseModel):
     answer: str
     answer_type: Literal["agent_sub_answer", "agent_level_answer"]
 
 
-class AgentSubQuery(SubQuestionIdentifier):
+class AgentSubQuery(BaseModel):
     sub_query: str
     query_id: int
 
@@ -127,12 +141,3 @@ class AgentSubQuery(SubQuestionIdentifier):
             sorted(level_question_dict.items(), key=lambda x: (x is None, x))
         )
         return sorted_dict
-
-
-class StandardAnswerRequest(BaseModel):
-    message: str
-    slack_bot_categories: list[str]
-
-
-class StandardAnswerResponse(BaseModel):
-    standard_answers: list[StandardAnswer] = Field(default_factory=list)

backend/ee/onyx/server/query_history/api.py

@@ -24,7 +24,7 @@ from onyx.auth.users import current_admin_user
 from onyx.auth.users import get_display_email
 from onyx.background.celery.versioned_apps.client import app as client_app
 from onyx.background.task_utils import construct_query_history_report_name
-from onyx.chat.chat_utils import create_chat_chain
+from onyx.chat.chat_utils import create_chat_history_chain
 from onyx.configs.app_configs import ONYX_QUERY_HISTORY_TYPE
 from onyx.configs.constants import FileOrigin
 from onyx.configs.constants import FileType
@@ -48,6 +48,7 @@ from onyx.file_store.file_store import get_default_file_store
 from onyx.server.documents.models import PaginatedReturn
 from onyx.server.query_and_chat.models import ChatSessionDetails
 from onyx.server.query_and_chat.models import ChatSessionsResponse
+from onyx.server.utils import PUBLIC_API_TAGS
 from onyx.utils.threadpool_concurrency import parallel_yield
 from shared_configs.contextvars import get_current_tenant_id
 
@@ -123,10 +124,9 @@ def snapshot_from_chat_session(
 ) -> ChatSessionSnapshot | None:
     try:
         # Older chats may not have the right structure
-        last_message, messages = create_chat_chain(
+        messages = create_chat_history_chain(
             chat_session_id=chat_session.id, db_session=db_session
         )
-        messages.append(last_message)
     except RuntimeError:
         return None
 
@@ -295,7 +295,7 @@ def list_all_query_history_exports(
         )
 
 
-@router.post("/admin/query-history/start-export")
+@router.post("/admin/query-history/start-export", tags=PUBLIC_API_TAGS)
 def start_query_history_export(
     _: User | None = Depends(current_admin_user),
     db_session: Session = Depends(get_session),
@@ -341,7 +341,7 @@ def start_query_history_export(
     return {"request_id": task_id}
 
 
-@router.get("/admin/query-history/export-status")
+@router.get("/admin/query-history/export-status", tags=PUBLIC_API_TAGS)
 def get_query_history_export_status(
     request_id: str,
     _: User | None = Depends(current_admin_user),
@@ -375,7 +375,7 @@ def get_query_history_export_status(
     return {"status": TaskStatus.SUCCESS}
 
 
-@router.get("/admin/query-history/download")
+@router.get("/admin/query-history/download", tags=PUBLIC_API_TAGS)
 def download_query_history_csv(
     request_id: str,
     _: User | None = Depends(current_admin_user),

backend/ee/onyx/server/tenant_usage_limits.py

@@ -0,0 +1,92 @@
+"""Tenant-specific usage limit overrides from the control plane (EE version)."""
+
+import requests
+
+from ee.onyx.server.tenants.access import generate_data_plane_token
+from onyx.configs.app_configs import CONTROL_PLANE_API_BASE_URL
+from onyx.server.tenant_usage_limits import TenantUsageLimitOverrides
+from onyx.utils.logger import setup_logger
+
+logger = setup_logger()
+
+
+# In-memory storage for tenant overrides (populated at startup)
+_tenant_usage_limit_overrides: dict[str, TenantUsageLimitOverrides] | None = None
+
+
+def fetch_usage_limit_overrides() -> dict[str, TenantUsageLimitOverrides]:
+    """
+    Fetch tenant-specific usage limit overrides from the control plane.
+
+    Returns:
+        Dictionary mapping tenant_id to their specific limit overrides.
+        Returns empty dict on any error (falls back to defaults).
+    """
+    try:
+        token = generate_data_plane_token()
+        headers = {
+            "Authorization": f"Bearer {token}",
+            "Content-Type": "application/json",
+        }
+        url = f"{CONTROL_PLANE_API_BASE_URL}/usage-limit-overrides"
+        response = requests.get(url, headers=headers, timeout=30)
+        response.raise_for_status()
+
+        tenant_overrides = response.json()
+
+        # Parse each tenant's overrides
+        result: dict[str, TenantUsageLimitOverrides] = {}
+        for override_data in tenant_overrides:
+            tenant_id = override_data["tenant_id"]
+            try:
+                result[tenant_id] = TenantUsageLimitOverrides(**override_data)
+            except Exception as e:
+                logger.warning(
+                    f"Failed to parse usage limit overrides for tenant {tenant_id}: {e}"
+                )
+
+        return result
+
+    except requests.exceptions.RequestException as e:
+        logger.warning(f"Failed to fetch usage limit overrides from control plane: {e}")
+        return {}
+    except Exception as e:
+        logger.error(f"Error parsing usage limit overrides: {e}")
+        return {}
+
+
+def load_usage_limit_overrides() -> dict[str, TenantUsageLimitOverrides]:
+    """
+    Load tenant usage limit overrides from the control plane.
+
+    Called at server startup to populate the in-memory cache.
+    """
+    global _tenant_usage_limit_overrides
+
+    logger.info("Loading tenant usage limit overrides from control plane...")
+    overrides = fetch_usage_limit_overrides()
+    _tenant_usage_limit_overrides = overrides
+
+    if overrides:
+        logger.info(f"Loaded usage limit overrides for {len(overrides)} tenants")
+    else:
+        logger.info("No tenant-specific usage limit overrides found")
+    return overrides
+
+
+def get_tenant_usage_limit_overrides(
+    tenant_id: str,
+) -> TenantUsageLimitOverrides | None:
+    """
+    Get the usage limit overrides for a specific tenant.
+
+    Args:
+        tenant_id: The tenant ID to look up
+
+    Returns:
+        TenantUsageLimitOverrides if the tenant has overrides, None otherwise.
+    """
+    global _tenant_usage_limit_overrides
+    if _tenant_usage_limit_overrides is None:
+        _tenant_usage_limit_overrides = load_usage_limit_overrides()
+    return _tenant_usage_limit_overrides.get(tenant_id)

backend/ee/onyx/server/tenants/provisioning.py

@@ -1,5 +1,4 @@
 import asyncio
-import logging
 import uuid
 
 import aiohttp  # Async HTTP client
@@ -10,10 +9,7 @@ from fastapi import Request
 from sqlalchemy import select
 from sqlalchemy.orm import Session
 
-from ee.onyx.configs.app_configs import ANTHROPIC_DEFAULT_API_KEY
-from ee.onyx.configs.app_configs import COHERE_DEFAULT_API_KEY
 from ee.onyx.configs.app_configs import HUBSPOT_TRACKING_URL
-from ee.onyx.configs.app_configs import OPENAI_DEFAULT_API_KEY
 from ee.onyx.server.tenants.access import generate_data_plane_token
 from ee.onyx.server.tenants.models import TenantByDomainResponse
 from ee.onyx.server.tenants.models import TenantCreationPayload
@@ -25,11 +21,18 @@ from ee.onyx.server.tenants.user_mapping import add_users_to_tenant
 from ee.onyx.server.tenants.user_mapping import get_tenant_id_for_email
 from ee.onyx.server.tenants.user_mapping import user_owns_a_tenant
 from onyx.auth.users import exceptions
+from onyx.configs.app_configs import ANTHROPIC_DEFAULT_API_KEY
+from onyx.configs.app_configs import COHERE_DEFAULT_API_KEY
 from onyx.configs.app_configs import CONTROL_PLANE_API_BASE_URL
 from onyx.configs.app_configs import DEV_MODE
+from onyx.configs.app_configs import OPENAI_DEFAULT_API_KEY
+from onyx.configs.app_configs import OPENROUTER_DEFAULT_API_KEY
+from onyx.configs.app_configs import VERTEXAI_DEFAULT_CREDENTIALS
+from onyx.configs.app_configs import VERTEXAI_DEFAULT_LOCATION
 from onyx.configs.constants import MilestoneRecordType
 from onyx.db.engine.sql_engine import get_session_with_shared_schema
 from onyx.db.engine.sql_engine import get_session_with_tenant
+from onyx.db.image_generation import create_default_image_gen_config_from_api_key
 from onyx.db.llm import update_default_provider
 from onyx.db.llm import upsert_cloud_embedding_provider
 from onyx.db.llm import upsert_llm_provider
@@ -37,17 +40,25 @@ from onyx.db.models import AvailableTenant
 from onyx.db.models import IndexModelStatus
 from onyx.db.models import SearchSettings
 from onyx.db.models import UserTenantMapping
-from onyx.llm.llm_provider_options import ANTHROPIC_PROVIDER_NAME
-from onyx.llm.llm_provider_options import ANTHROPIC_VISIBLE_MODEL_NAMES
-from onyx.llm.llm_provider_options import get_anthropic_model_names
-from onyx.llm.llm_provider_options import OPEN_AI_MODEL_NAMES
-from onyx.llm.llm_provider_options import OPEN_AI_VISIBLE_MODEL_NAMES
-from onyx.llm.llm_provider_options import OPENAI_PROVIDER_NAME
+from onyx.llm.well_known_providers.auto_update_models import LLMRecommendations
+from onyx.llm.well_known_providers.constants import ANTHROPIC_PROVIDER_NAME
+from onyx.llm.well_known_providers.constants import OPENAI_PROVIDER_NAME
+from onyx.llm.well_known_providers.constants import OPENROUTER_PROVIDER_NAME
+from onyx.llm.well_known_providers.constants import VERTEX_CREDENTIALS_FILE_KWARG
+from onyx.llm.well_known_providers.constants import VERTEX_LOCATION_KWARG
+from onyx.llm.well_known_providers.constants import VERTEXAI_PROVIDER_NAME
+from onyx.llm.well_known_providers.llm_provider_options import (
+    get_recommendations,
+)
+from onyx.llm.well_known_providers.llm_provider_options import (
+    model_configurations_for_provider,
+)
 from onyx.server.manage.embedding.models import CloudEmbeddingProviderCreationRequest
 from onyx.server.manage.llm.models import LLMProviderUpsertRequest
 from onyx.server.manage.llm.models import ModelConfigurationUpsertRequest
 from onyx.setup import setup_onyx
-from onyx.utils.telemetry import create_milestone_and_report
+from onyx.utils.logger import setup_logger
+from onyx.utils.telemetry import mt_cloud_telemetry
 from shared_configs.configs import MULTI_TENANT
 from shared_configs.configs import POSTGRES_DEFAULT_SCHEMA
 from shared_configs.configs import TENANT_ID_PREFIX
@@ -55,7 +66,7 @@ from shared_configs.contextvars import CURRENT_TENANT_ID_CONTEXTVAR
 from shared_configs.enums import EmbeddingProvider
 
 
-logger = logging.getLogger(__name__)
+logger = setup_logger()
 
 
 async def get_or_provision_tenant(
@@ -264,61 +275,173 @@ async def rollback_tenant_provisioning(tenant_id: str) -> None:
         logger.info(f"Tenant rollback completed successfully for tenant {tenant_id}")
 
 
-def configure_default_api_keys(db_session: Session) -> None:
-    if ANTHROPIC_DEFAULT_API_KEY:
-        anthropic_provider = LLMProviderUpsertRequest(
-            name="Anthropic",
-            provider=ANTHROPIC_PROVIDER_NAME,
-            api_key=ANTHROPIC_DEFAULT_API_KEY,
-            default_model_name="claude-3-7-sonnet-20250219",
-            fast_default_model_name="claude-3-5-sonnet-20241022",
-            model_configurations=[
-                ModelConfigurationUpsertRequest(
-                    name=name,
-                    is_visible=name in ANTHROPIC_VISIBLE_MODEL_NAMES,
-                    max_input_tokens=None,
-                )
-                for name in get_anthropic_model_names()
-            ],
-            api_key_changed=True,
-        )
-        try:
-            full_provider = upsert_llm_provider(anthropic_provider, db_session)
-            update_default_provider(full_provider.id, db_session)
-        except Exception as e:
-            logger.error(f"Failed to configure Anthropic provider: {e}")
-    else:
-        logger.error(
-            "ANTHROPIC_DEFAULT_API_KEY not set, skipping Anthropic provider configuration"
+def _build_model_configuration_upsert_requests(
+    provider_name: str,
+    recommendations: LLMRecommendations,
+) -> list[ModelConfigurationUpsertRequest]:
+    model_configurations = model_configurations_for_provider(
+        provider_name, recommendations
+    )
+    return [
+        ModelConfigurationUpsertRequest(
+            name=model_configuration.name,
+            is_visible=model_configuration.is_visible,
+            max_input_tokens=model_configuration.max_input_tokens,
+            supports_image_input=model_configuration.supports_image_input,
         )
+        for model_configuration in model_configurations
+    ]
 
+
+def configure_default_api_keys(db_session: Session) -> None:
+    """Configure default LLM providers using recommended-models.json for model selection."""
+    # Load recommendations from JSON config
+    recommendations = get_recommendations()
+
+    has_set_default_provider = False
+
+    def _upsert(request: LLMProviderUpsertRequest) -> None:
+        nonlocal has_set_default_provider
+        try:
+            provider = upsert_llm_provider(request, db_session)
+            if not has_set_default_provider:
+                update_default_provider(provider.id, db_session)
+                has_set_default_provider = True
+        except Exception as e:
+            logger.error(f"Failed to configure {request.provider} provider: {e}")
+
+    # Configure OpenAI provider
     if OPENAI_DEFAULT_API_KEY:
+        default_model = recommendations.get_default_model(OPENAI_PROVIDER_NAME)
+        if default_model is None:
+            logger.error(
+                f"No default model found for {OPENAI_PROVIDER_NAME} in recommendations"
+            )
+        default_model_name = default_model.name if default_model else "gpt-5.2"
+
         openai_provider = LLMProviderUpsertRequest(
             name="OpenAI",
             provider=OPENAI_PROVIDER_NAME,
             api_key=OPENAI_DEFAULT_API_KEY,
-            default_model_name="gpt-4o",
-            fast_default_model_name="gpt-4o-mini",
-            model_configurations=[
-                ModelConfigurationUpsertRequest(
-                    name=model_name,
-                    is_visible=model_name in OPEN_AI_VISIBLE_MODEL_NAMES,
-                    max_input_tokens=None,
-                )
-                for model_name in OPEN_AI_MODEL_NAMES
-            ],
+            default_model_name=default_model_name,
+            model_configurations=_build_model_configuration_upsert_requests(
+                OPENAI_PROVIDER_NAME, recommendations
+            ),
             api_key_changed=True,
+            is_auto_mode=True,
         )
+        _upsert(openai_provider)
+
+        # Create default image generation config using the OpenAI API key
         try:
-            full_provider = upsert_llm_provider(openai_provider, db_session)
-            update_default_provider(full_provider.id, db_session)
+            create_default_image_gen_config_from_api_key(
+                db_session, OPENAI_DEFAULT_API_KEY
+            )
         except Exception as e:
-            logger.error(f"Failed to configure OpenAI provider: {e}")
+            logger.error(f"Failed to create default image gen config: {e}")
     else:
-        logger.error(
+        logger.info(
             "OPENAI_DEFAULT_API_KEY not set, skipping OpenAI provider configuration"
         )
 
+    # Configure Anthropic provider
+    if ANTHROPIC_DEFAULT_API_KEY:
+        default_model = recommendations.get_default_model(ANTHROPIC_PROVIDER_NAME)
+        if default_model is None:
+            logger.error(
+                f"No default model found for {ANTHROPIC_PROVIDER_NAME} in recommendations"
+            )
+        default_model_name = (
+            default_model.name if default_model else "claude-sonnet-4-5"
+        )
+
+        anthropic_provider = LLMProviderUpsertRequest(
+            name="Anthropic",
+            provider=ANTHROPIC_PROVIDER_NAME,
+            api_key=ANTHROPIC_DEFAULT_API_KEY,
+            default_model_name=default_model_name,
+            model_configurations=_build_model_configuration_upsert_requests(
+                ANTHROPIC_PROVIDER_NAME, recommendations
+            ),
+            api_key_changed=True,
+            is_auto_mode=True,
+        )
+        _upsert(anthropic_provider)
+    else:
+        logger.info(
+            "ANTHROPIC_DEFAULT_API_KEY not set, skipping Anthropic provider configuration"
+        )
+
+    # Configure Vertex AI provider
+    if VERTEXAI_DEFAULT_CREDENTIALS:
+        default_model = recommendations.get_default_model(VERTEXAI_PROVIDER_NAME)
+        if default_model is None:
+            logger.error(
+                f"No default model found for {VERTEXAI_PROVIDER_NAME} in recommendations"
+            )
+        default_model_name = default_model.name if default_model else "gemini-2.5-pro"
+
+        # Vertex AI uses custom_config for credentials and location
+        custom_config = {
+            VERTEX_CREDENTIALS_FILE_KWARG: VERTEXAI_DEFAULT_CREDENTIALS,
+            VERTEX_LOCATION_KWARG: VERTEXAI_DEFAULT_LOCATION,
+        }
+
+        vertexai_provider = LLMProviderUpsertRequest(
+            name="Google Vertex AI",
+            provider=VERTEXAI_PROVIDER_NAME,
+            custom_config=custom_config,
+            default_model_name=default_model_name,
+            model_configurations=_build_model_configuration_upsert_requests(
+                VERTEXAI_PROVIDER_NAME, recommendations
+            ),
+            api_key_changed=True,
+            is_auto_mode=True,
+        )
+        _upsert(vertexai_provider)
+    else:
+        logger.info(
+            "VERTEXAI_DEFAULT_CREDENTIALS not set, skipping Vertex AI provider configuration"
+        )
+
+    # Configure OpenRouter provider
+    if OPENROUTER_DEFAULT_API_KEY:
+        default_model = recommendations.get_default_model(OPENROUTER_PROVIDER_NAME)
+        if default_model is None:
+            logger.error(
+                f"No default model found for {OPENROUTER_PROVIDER_NAME} in recommendations"
+            )
+        default_model_name = default_model.name if default_model else "z-ai/glm-4.7"
+
+        # For OpenRouter, we use the visible models from recommendations as model_configurations
+        # since OpenRouter models are dynamic (fetched from their API)
+        visible_models = recommendations.get_visible_models(OPENROUTER_PROVIDER_NAME)
+        model_configurations = [
+            ModelConfigurationUpsertRequest(
+                name=model.name,
+                is_visible=True,
+                max_input_tokens=None,
+                display_name=model.display_name,
+            )
+            for model in visible_models
+        ]
+
+        openrouter_provider = LLMProviderUpsertRequest(
+            name="OpenRouter",
+            provider=OPENROUTER_PROVIDER_NAME,
+            api_key=OPENROUTER_DEFAULT_API_KEY,
+            default_model_name=default_model_name,
+            model_configurations=model_configurations,
+            api_key_changed=True,
+            is_auto_mode=True,
+        )
+        _upsert(openrouter_provider)
+    else:
+        logger.info(
+            "OPENROUTER_DEFAULT_API_KEY not set, skipping OpenRouter provider configuration"
+        )
+
+    # Configure Cohere embedding provider
     if COHERE_DEFAULT_API_KEY:
         cloud_embedding_provider = CloudEmbeddingProviderCreationRequest(
             provider_type=EmbeddingProvider.COHERE,
@@ -564,17 +687,11 @@ async def assign_tenant_to_user(
     try:
         add_users_to_tenant([email], tenant_id)
 
-        # Create milestone record in the same transaction context as the tenant assignment
-        with get_session_with_tenant(tenant_id=tenant_id) as db_session:
-            create_milestone_and_report(
-                user=None,
-                distinct_id=tenant_id,
-                event_type=MilestoneRecordType.TENANT_CREATED,
-                properties={
-                    "email": email,
-                },
-                db_session=db_session,
-            )
+        mt_cloud_telemetry(
+            tenant_id=tenant_id,
+            distinct_id=email,
+            event=MilestoneRecordType.TENANT_CREATED,
+        )
     except Exception:
         logger.exception(f"Failed to assign tenant {tenant_id} to user {email}")
         raise Exception("Failed to assign tenant to user")

backend/ee/onyx/server/tenants/user_mapping.py

@@ -249,6 +249,17 @@ def accept_user_invite(email: str, tenant_id: str) -> None:
             )
             raise
 
+    # Remove from invited users list since they've accepted
+    token = CURRENT_TENANT_ID_CONTEXTVAR.set(tenant_id)
+    try:
+        invited_users = get_invited_users()
+        if email in invited_users:
+            invited_users.remove(email)
+            write_invited_users(invited_users)
+            logger.info(f"Removed {email} from invited users list after acceptance")
+    finally:
+        CURRENT_TENANT_ID_CONTEXTVAR.reset(token)
+
 
 def deny_user_invite(email: str, tenant_id: str) -> None:
     """

backend/ee/onyx/server/token_rate_limits/api.py

@@ -16,8 +16,9 @@ from onyx.db.token_limit import insert_user_token_rate_limit
 from onyx.server.query_and_chat.token_limit import any_rate_limit_exists
 from onyx.server.token_rate_limits.models import TokenRateLimitArgs
 from onyx.server.token_rate_limits.models import TokenRateLimitDisplay
+from onyx.server.utils import PUBLIC_API_TAGS
 
-router = APIRouter(prefix="/admin/token-rate-limits")
+router = APIRouter(prefix="/admin/token-rate-limits", tags=PUBLIC_API_TAGS)
 
 
 """